Wall clock time and date at job start Wed Apr 1 2020 00:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38421 * 119.84406 * 2 1 4 4 C 1.37895 * 120.18705 * 179.69716 * 3 2 1 5 5 C 1.39630 * 119.86245 * 0.60124 * 4 3 2 6 6 C 1.47768 * 120.15100 * 179.69579 * 5 4 3 7 7 O 1.21563 * 119.99819 * 227.90814 * 6 5 4 8 8 N 1.34775 * 119.99971 * 47.92150 * 6 5 4 9 9 C 1.46501 * 120.00456 * 355.58874 * 8 6 5 10 10 C 1.46504 * 119.99880 * 175.59817 * 8 6 5 11 11 C 1.53001 * 109.47451 * 89.99247 * 10 8 6 12 12 H 1.08997 * 109.46923 * 304.99963 * 11 10 8 13 13 O 1.42906 * 109.46873 * 65.00212 * 11 10 8 14 14 C 1.52995 * 109.46955 * 184.99863 * 11 10 8 15 15 N 1.46497 * 109.47038 * 180.02562 * 14 11 10 16 16 C 1.46504 * 120.00151 * 90.00263 * 15 14 11 17 17 C 1.36939 * 120.00497 * 270.00213 * 15 14 11 18 18 H 1.08005 * 119.99575 * 28.03377 * 17 15 14 19 19 C 1.38812 * 120.00547 * 208.03310 * 17 15 14 20 20 N 1.31623 * 119.99680 * 8.20086 * 19 17 15 21 21 Si 1.86790 * 120.00102 * 188.20383 * 19 17 15 22 22 H 1.48501 * 109.47340 * 90.00171 * 21 19 17 23 23 H 1.48503 * 109.47195 * 209.99827 * 21 19 17 24 24 H 1.48496 * 109.47635 * 330.00171 * 21 19 17 25 25 C 1.39692 * 119.68977 * 359.42282 * 5 4 3 26 26 Cl 1.73594 * 120.09418 * 180.29676 * 25 5 4 27 27 C 1.38159 * 119.81192 * 0.27576 * 25 5 4 28 28 H 1.09001 * 109.47261 * 269.97219 * 1 2 3 29 29 H 1.09001 * 109.47268 * 29.97862 * 1 2 3 30 30 H 1.09002 * 109.46772 * 149.98211 * 1 2 3 31 31 H 1.08000 * 119.90502 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.06970 * 180.31728 * 4 3 2 33 33 H 1.08999 * 109.47134 * 274.66355 * 9 8 6 34 34 H 1.09000 * 109.46573 * 34.66023 * 9 8 6 35 35 H 1.08992 * 109.47377 * 154.65625 * 9 8 6 36 36 H 1.09002 * 109.46728 * 329.99287 * 10 8 6 37 37 H 1.08996 * 109.47185 * 209.99746 * 10 8 6 38 38 H 0.96699 * 113.99799 * 59.99808 * 13 11 10 39 39 H 1.08996 * 109.47753 * 300.00212 * 14 11 10 40 40 H 1.09001 * 109.46895 * 60.00612 * 14 11 10 41 41 H 1.08993 * 109.47114 * 85.68180 * 16 15 14 42 42 H 1.09001 * 109.47238 * 205.68552 * 16 15 14 43 43 H 1.09012 * 109.46722 * 325.68523 * 16 15 14 44 44 H 0.97001 * 119.99980 * 179.97438 * 20 19 17 45 45 H 1.08005 * 119.93220 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2006 0.0000 4 6 3.5747 1.2089 0.0063 5 6 4.2772 0.0022 0.0000 6 6 5.7549 0.0037 -0.0001 7 8 6.3633 -0.6974 -0.7850 8 7 6.4281 0.7820 0.8702 9 6 5.6981 1.6982 1.7500 10 6 7.8899 0.7121 0.9364 11 6 8.4937 1.7233 -0.0403 12 1 8.0949 1.5464 -1.0391 13 8 8.1593 3.0481 0.3785 14 6 10.0152 1.5644 -0.0630 15 7 10.5934 2.5330 -0.9977 16 6 10.9850 3.8633 -0.5250 17 6 10.7680 2.1952 -2.3132 18 1 10.1189 1.4651 -2.7738 19 6 11.7790 2.7909 -3.0546 20 7 12.6689 3.5558 -2.4585 21 14 11.8765 2.5071 -4.8983 22 1 11.0863 3.5490 -5.6020 23 1 13.2936 2.5806 -5.3362 24 1 11.3271 1.1661 -5.2225 25 6 3.5766 -1.2063 -0.0005 26 17 4.4394 -2.7126 -0.0005 27 6 2.1950 -1.1993 -0.0004 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6517 2.1336 0.0004 32 1 4.1102 2.1468 0.0115 33 1 5.5122 2.6352 1.2250 34 1 4.7478 1.2473 2.0359 35 1 6.2909 1.8936 2.6435 36 1 8.2181 -0.2923 0.6686 37 1 8.2193 0.9439 1.9492 38 1 8.4832 3.2751 1.2609 39 1 10.4141 1.7413 0.9358 40 1 10.2703 0.5540 -0.3824 41 1 11.9966 3.8223 -0.1215 42 1 10.9535 4.5680 -1.3560 43 1 10.2959 4.1894 0.2542 44 1 13.3757 3.9718 -2.9766 45 1 1.6514 -2.1325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700967174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:49 Heat of formation + Delta-G solvation = -59.817238 kcal Electronic energy + Delta-G solvation = -27539.707408 eV Core-core repulsion = 23583.194255 eV Total energy + Delta-G solvation = -3956.513153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54983 -39.88657 -38.79442 -37.56646 -36.84868 -36.02467 -33.93460 -33.30612 -31.92785 -31.24445 -28.72336 -28.09082 -27.78332 -26.59258 -24.12884 -23.74625 -22.83846 -22.30060 -20.79351 -18.87793 -18.46479 -17.77242 -17.15633 -17.05892 -16.89667 -16.73879 -16.42643 -15.86053 -15.58050 -15.27112 -15.04980 -15.00634 -14.75962 -14.64737 -14.30900 -13.94277 -13.69306 -13.65239 -13.36775 -13.11764 -13.04423 -12.88404 -12.85339 -12.67649 -12.52491 -12.29482 -12.23883 -12.14480 -12.10020 -12.03538 -11.96038 -11.81299 -11.31876 -10.95205 -10.62643 -9.94681 -9.75649 -9.59858 -8.61675 -7.87179 -5.38258 -0.23683 0.12985 1.05135 1.40686 1.41505 1.51271 1.60785 1.94170 2.46741 2.52028 3.25847 3.37880 3.54896 3.68145 3.72994 3.85534 4.05650 4.15776 4.19226 4.19932 4.29606 4.34305 4.47906 4.52610 4.63855 4.69091 4.76255 4.83781 4.88040 4.94444 4.95828 5.00380 5.02925 5.14761 5.23242 5.24227 5.40278 5.43997 5.50850 5.58047 5.70293 5.73632 6.29434 6.34163 7.01969 7.06758 7.14973 7.86773 8.29744 9.15571 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.002704 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.713904 B =10351.766717 C =10704.922792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.116 4.116 4 C -0.074 4.074 5 C -0.147 4.147 6 C 0.545 3.455 7 O -0.567 6.567 8 N -0.598 5.598 9 C 0.076 3.924 10 C 0.095 3.905 11 C 0.095 3.905 12 H 0.047 0.953 13 O -0.557 6.557 14 C 0.123 3.877 15 N -0.611 5.611 16 C 0.184 3.816 17 C -0.265 4.265 18 H 0.052 0.948 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.008 4.008 26 Cl -0.070 7.070 27 C -0.122 4.122 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.167 0.833 32 H 0.148 0.852 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.379 0.621 39 H 0.069 0.931 40 H 0.041 0.959 41 H -0.007 1.007 42 H 0.016 0.984 43 H 0.038 0.962 44 H 0.250 0.750 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.639 -4.936 14.471 31.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.133 4.133 4 C -0.092 4.092 5 C -0.151 4.151 6 C 0.334 3.666 7 O -0.446 6.446 8 N -0.329 5.329 9 C -0.066 4.066 10 C -0.028 4.028 11 C 0.032 3.968 12 H 0.065 0.935 13 O -0.364 6.364 14 C -0.004 4.004 15 N -0.333 5.333 16 C 0.040 3.960 17 C -0.395 4.395 18 H 0.069 0.931 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.211 1.211 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.036 4.036 26 Cl -0.041 7.041 27 C -0.141 4.141 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.185 0.815 32 H 0.165 0.835 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.227 0.773 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.011 0.989 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.354 -5.323 13.445 30.941 hybrid contribution 1.246 -0.431 -0.904 1.598 sum -26.108 -5.753 12.541 29.530 Atomic orbital electron populations 1.20955 0.87588 1.04532 1.04156 1.20457 0.98337 0.91546 0.94530 1.21476 0.92884 0.99572 0.99405 1.21590 0.95335 0.96178 0.96112 1.19740 0.92410 0.94285 1.08642 1.18698 0.87846 0.79545 0.80531 1.90817 1.70384 1.43644 1.39788 1.47730 1.06885 1.40213 1.38033 1.22205 0.97618 0.92640 0.94125 1.22208 0.79040 1.00155 1.01430 1.22638 0.95463 0.82362 0.96289 0.93506 1.86589 1.79950 1.31052 1.38767 1.21486 0.92099 0.92926 0.93926 1.43878 1.72671 1.11147 1.05636 1.20485 0.94465 0.85360 0.95735 1.19356 1.09656 1.22517 0.87999 0.93069 1.25819 0.95528 1.00449 1.02513 1.70181 1.16293 1.36267 1.35337 0.85313 0.76723 0.78008 0.80702 1.21135 1.21231 1.20025 1.21141 0.93272 0.86097 1.03083 1.98396 1.77608 1.31478 1.96634 1.21161 0.90260 1.00619 1.02053 0.88933 0.89495 0.90380 0.81530 0.83464 0.91461 0.90231 0.88454 0.91011 0.86195 0.77310 0.91233 0.94082 0.98888 0.96465 0.94339 0.94084 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.00 71.23 0.71 0.11 16 2 C -0.05 -0.58 5.88 -19.82 -0.12 -0.70 16 3 C -0.12 -1.42 9.68 22.23 0.22 -1.21 16 4 C -0.07 -1.33 7.75 22.52 0.17 -1.15 16 5 C -0.15 -3.68 4.93 -20.07 -0.10 -3.78 16 6 C 0.55 17.27 6.78 86.76 0.59 17.86 16 7 O -0.57 -23.36 15.42 -3.92 -0.06 -23.42 16 8 N -0.60 -15.41 2.84 -850.28 -2.41 -17.82 16 9 C 0.08 1.21 8.69 127.77 1.11 2.32 16 10 C 0.10 2.60 5.07 86.38 0.44 3.04 16 11 C 0.10 3.40 3.48 30.59 0.11 3.51 16 12 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 13 O -0.56 -17.89 11.55 -148.98 -1.72 -19.61 16 14 C 0.12 5.05 5.38 86.38 0.46 5.51 16 15 N -0.61 -32.11 2.83 -726.93 -2.06 -34.17 16 16 C 0.18 9.33 8.77 127.77 1.12 10.45 16 17 C -0.26 -15.73 9.61 84.03 0.81 -14.92 16 18 H 0.05 3.11 7.84 -2.91 -0.02 3.08 16 19 C -0.05 -2.84 5.12 84.86 0.43 -2.40 16 20 N -0.93 -57.48 10.82 21.65 0.23 -57.24 16 21 Si 0.96 48.17 29.56 68.60 2.03 50.19 16 22 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 25 C -0.01 -0.20 6.34 22.60 0.14 -0.06 16 26 Cl -0.07 -1.91 27.14 -2.72 -0.07 -1.98 16 27 C -0.12 -2.02 9.47 22.26 0.21 -1.81 16 28 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.26 8.08 -2.39 -0.02 0.24 16 30 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 31 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.15 2.41 6.21 -2.91 -0.02 2.39 16 33 H 0.07 1.07 7.05 -2.39 -0.02 1.05 16 34 H 0.08 1.09 6.21 -2.39 -0.01 1.07 16 35 H 0.10 1.08 7.84 -2.39 -0.02 1.06 16 36 H 0.07 2.27 7.49 -2.39 -0.02 2.25 16 37 H 0.12 2.26 7.86 -2.39 -0.02 2.24 16 38 H 0.38 8.60 8.81 -74.06 -0.65 7.95 16 39 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 40 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 41 H -0.01 -0.39 7.78 -2.39 -0.02 -0.41 16 42 H 0.02 0.95 6.92 -2.39 -0.02 0.93 16 43 H 0.04 1.60 6.81 -2.38 -0.02 1.58 16 44 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 45 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -81.94 382.25 2.60 -79.33 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.36 Total: 7.94 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 6.31 Total: 16.78 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -4.24 Total: -109.24 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.78 Total: -43.03 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.19 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.07 Total: -1.98 kcal Total: -81.94 2.60 -79.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700967174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.517 kcal (2) G-P(sol) polarization free energy of solvation -81.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds