Wall clock time and date at job start Wed Apr 1 2020 00:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99906 * 2 1 4 4 C 1.53005 * 109.47164 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46927 * 65.00045 * 4 3 2 6 6 C 1.36936 * 120.00090 * 274.85863 * 5 4 3 7 7 H 1.08004 * 119.99434 * 144.72164 * 6 5 4 8 8 C 1.38802 * 119.99974 * 324.71797 * 6 5 4 9 9 N 1.31617 * 120.00521 * 335.54406 * 8 6 5 10 10 Si 1.86802 * 120.00003 * 155.54719 * 8 6 5 11 11 H 1.48499 * 109.47331 * 59.99701 * 10 8 6 12 12 H 1.48503 * 109.47478 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47077 * 300.00029 * 10 8 6 14 14 C 1.46504 * 119.99500 * 94.85472 * 5 4 3 15 15 C 1.52993 * 109.47340 * 270.00049 * 14 5 4 16 16 N 1.46500 * 109.46911 * 180.02562 * 15 14 5 17 17 C 1.34782 * 120.00194 * 180.02562 * 16 15 14 18 18 O 1.21560 * 119.99487 * 359.97438 * 17 16 15 19 19 C 1.47849 * 120.00260 * 179.97438 * 17 16 15 20 20 C 1.39598 * 120.13874 * 6.13234 * 19 17 16 21 21 C 1.37929 * 119.87987 * 179.97438 * 20 19 17 22 22 C 1.38365 * 120.16146 * 359.72057 * 21 20 19 23 23 C 1.38446 * 120.27609 * 0.56077 * 22 21 20 24 24 Cl 1.73600 * 119.94142 * 179.72182 * 23 22 21 25 25 C 1.38092 * 120.11910 * 359.43867 * 23 22 21 26 26 C 1.50704 * 120.08348 * 180.25921 * 25 23 22 27 27 H 1.09002 * 109.46744 * 59.99637 * 1 2 3 28 28 H 1.09000 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47199 * 299.99988 * 1 2 3 30 30 H 1.09004 * 109.46962 * 60.00120 * 3 2 1 31 31 H 1.08996 * 109.47542 * 300.00452 * 3 2 1 32 32 H 1.08996 * 109.46842 * 305.00681 * 4 3 2 33 33 H 1.08998 * 109.46960 * 184.99905 * 4 3 2 34 34 H 0.97000 * 120.00819 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.46880 * 149.99770 * 14 5 4 36 36 H 1.08999 * 109.47097 * 30.00255 * 14 5 4 37 37 H 1.08997 * 109.47363 * 60.00234 * 15 14 5 38 38 H 1.08999 * 109.47193 * 300.00146 * 15 14 5 39 39 H 0.96998 * 120.00214 * 359.97438 * 16 15 14 40 40 H 1.08003 * 120.05416 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.92176 * 180.02562 * 21 20 19 42 42 H 1.07998 * 119.86130 * 180.27677 * 22 21 20 43 43 H 1.09001 * 109.47520 * 95.84151 * 26 25 23 44 44 H 1.09000 * 109.47122 * 215.84102 * 26 25 23 45 45 H 1.08997 * 109.46754 * 335.83725 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0027 -0.8001 -1.3667 7 1 3.7615 -1.2666 -2.3105 8 6 4.3389 -1.5833 -0.2712 9 7 5.0752 -1.0799 0.6967 10 14 3.7466 -3.3521 -0.1705 11 1 4.2692 -4.1161 -1.3317 12 1 4.2370 -3.9675 1.0889 13 1 2.2619 -3.3787 -0.1883 14 6 4.3900 1.4030 -2.3786 15 6 3.1761 1.7104 -3.2575 16 7 3.5896 2.5488 -4.3854 17 6 2.6809 2.9476 -5.2975 18 8 1.5183 2.6111 -5.1844 19 6 3.0982 3.7942 -6.4355 20 6 4.4498 4.0766 -6.6405 21 6 4.8332 4.8666 -7.7042 22 6 3.8820 5.3746 -8.5712 23 6 2.5392 5.1034 -8.3708 24 17 1.3525 5.7511 -9.4598 25 6 2.1425 4.3138 -7.3096 26 6 0.6811 4.0144 -7.0956 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1766 0.0902 34 1 5.3099 -1.6271 1.4624 35 1 5.1409 0.8760 -2.9675 36 1 4.8118 2.3351 -2.0026 37 1 2.4253 2.2374 -2.6687 38 1 2.7543 0.7783 -3.6335 39 1 4.5172 2.8176 -4.4755 40 1 5.1940 3.6773 -5.9673 41 1 5.8787 5.0852 -7.8636 42 1 4.1879 5.9889 -9.4051 43 1 0.4372 3.0528 -7.5474 44 1 0.4705 3.9774 -6.0268 45 1 0.0786 4.7963 -7.5578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701002281.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:31 Heat of formation + Delta-G solvation = -54.661695 kcal Electronic energy + Delta-G solvation = -27209.424315 eV Core-core repulsion = 23253.134723 eV Total energy + Delta-G solvation = -3956.289592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47931 -39.58174 -38.88334 -37.46741 -37.39002 -35.86176 -33.69470 -33.41316 -32.26536 -30.86516 -29.14866 -27.98906 -27.16095 -25.88592 -24.75111 -23.45402 -22.47997 -22.16776 -21.50410 -19.01035 -18.58582 -17.55163 -17.20680 -16.83307 -16.66628 -16.60224 -16.45810 -16.22579 -16.14600 -15.65761 -15.45028 -15.13431 -14.79846 -14.68112 -14.29047 -14.21546 -13.59884 -13.43303 -13.42289 -13.28680 -13.03734 -12.95973 -12.67484 -12.58923 -12.50654 -12.43693 -12.38809 -12.27055 -11.92879 -11.74150 -11.69689 -11.54026 -10.78862 -10.43535 -10.36532 -10.18935 -9.85775 -9.70284 -8.56859 -7.76271 -5.32401 -0.29789 0.11797 1.05900 1.46663 1.51886 1.59746 1.76182 2.11078 2.60702 2.66981 3.20624 3.36591 3.55850 3.70337 3.80121 3.88578 3.96784 4.22937 4.27312 4.29262 4.41082 4.50171 4.53165 4.57592 4.63774 4.67607 4.70869 4.72131 4.73108 4.80507 4.89333 4.95809 5.11661 5.12295 5.13701 5.20177 5.25101 5.37942 5.51319 5.68423 5.73391 5.82690 6.46126 6.53667 6.66252 7.19140 7.24454 7.92753 8.39811 9.20680 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.002408 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.212810 B =11623.858460 C =12258.162024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.052 3.948 4 C 0.136 3.864 5 N -0.586 5.586 6 C -0.244 4.244 7 H 0.044 0.956 8 C -0.016 4.016 9 N -0.912 5.912 10 Si 0.940 3.060 11 H -0.279 1.279 12 H -0.295 1.295 13 H -0.288 1.288 14 C 0.142 3.858 15 C 0.119 3.881 16 N -0.705 5.705 17 C 0.548 3.452 18 O -0.571 6.571 19 C -0.143 4.143 20 C -0.073 4.073 21 C -0.111 4.111 22 C -0.076 4.076 23 C -0.060 4.060 24 Cl -0.063 7.063 25 C -0.035 4.035 26 C -0.121 4.121 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.249 0.751 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.034 0.966 39 H 0.413 0.587 40 H 0.158 0.842 41 H 0.177 0.823 42 H 0.164 0.836 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.826 16.720 -16.491 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.010 3.990 5 N -0.306 5.306 6 C -0.374 4.374 7 H 0.061 0.939 8 C -0.213 4.213 9 N -0.557 5.557 10 Si 0.769 3.231 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.215 1.215 14 C 0.015 3.985 15 C -0.007 4.007 16 N -0.357 5.357 17 C 0.337 3.663 18 O -0.452 6.452 19 C -0.147 4.147 20 C -0.092 4.092 21 C -0.129 4.129 22 C -0.095 4.095 23 C -0.087 4.087 24 Cl -0.034 7.034 25 C -0.037 4.037 26 C -0.177 4.177 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.251 0.749 40 H 0.176 0.824 41 H 0.194 0.806 42 H 0.182 0.818 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.533 16.267 -16.315 23.090 hybrid contribution -0.713 -0.905 0.259 1.180 sum -2.245 15.363 -16.056 22.335 Atomic orbital electron populations 1.22785 0.82064 1.02349 0.99836 1.88164 1.19122 1.28691 1.95121 1.23333 0.97174 0.83983 0.98129 1.21086 0.89505 0.96683 0.91701 1.43706 1.74459 1.01911 1.10512 1.18802 1.39119 0.82491 0.97014 0.93867 1.25356 0.97260 1.00074 0.98613 1.70064 1.36520 1.37584 1.11515 0.85793 0.78457 0.82308 0.76505 1.20508 1.22096 1.21457 1.21051 0.92939 0.95146 0.89344 1.21956 0.99588 0.92574 0.86631 1.45788 1.12466 1.51953 1.25527 1.18619 0.85172 0.80006 0.82507 1.90722 1.19485 1.57840 1.77181 1.19686 0.95068 1.02853 0.97069 1.21768 0.93656 0.95665 0.98063 1.21485 1.01555 0.96537 0.93307 1.21646 0.89688 0.98075 1.00101 1.20844 0.91558 1.01932 0.94379 1.98361 1.57820 1.84912 1.62264 1.19914 0.96972 0.94329 0.92486 1.21042 0.90789 1.01808 1.04067 0.94556 0.90287 0.93245 0.93545 0.94820 0.91209 0.91786 0.94187 0.92658 0.91630 0.93379 0.94723 0.74859 0.82440 0.80568 0.81848 0.91300 0.90356 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 11.01 113.37 1.25 2.17 16 2 O -0.39 -17.77 9.95 -148.98 -1.48 -19.25 16 3 C 0.05 2.11 6.28 71.98 0.45 2.56 16 4 C 0.14 6.10 5.83 86.38 0.50 6.61 16 5 N -0.59 -27.50 2.45 -702.00 -1.72 -29.22 16 6 C -0.24 -13.17 8.71 84.03 0.73 -12.44 16 7 H 0.04 2.41 7.94 -2.91 -0.02 2.39 16 8 C -0.02 -0.86 4.94 84.86 0.42 -0.44 16 9 N -0.91 -52.39 11.45 21.65 0.25 -52.14 16 10 Si 0.94 46.23 29.62 68.60 2.03 48.26 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 13 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 14 C 0.14 5.23 5.82 86.38 0.50 5.73 16 15 C 0.12 4.18 6.00 86.38 0.52 4.70 16 16 N -0.70 -19.06 5.51 -465.97 -2.57 -21.63 16 17 C 0.55 16.35 7.70 86.79 0.67 17.02 16 18 O -0.57 -21.51 13.33 -3.91 -0.05 -21.57 16 19 C -0.14 -3.30 5.87 -20.09 -0.12 -3.42 16 20 C -0.07 -1.09 9.52 22.52 0.21 -0.88 16 21 C -0.11 -1.18 10.03 22.23 0.22 -0.96 16 22 C -0.08 -0.97 9.82 22.35 0.22 -0.75 16 23 C -0.06 -1.12 6.31 22.28 0.14 -0.98 16 24 Cl -0.06 -1.09 27.18 -2.72 -0.07 -1.17 16 25 C -0.04 -0.82 5.92 -19.58 -0.12 -0.94 16 26 C -0.12 -3.09 8.46 71.24 0.60 -2.49 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.31 6.50 -2.39 -0.02 1.30 16 32 H 0.07 3.69 5.46 -2.39 -0.01 3.68 16 33 H 0.06 2.50 7.84 -2.39 -0.02 2.48 16 34 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.05 2.03 8.04 -2.38 -0.02 2.02 16 36 H 0.07 2.08 7.86 -2.39 -0.02 2.06 16 37 H 0.05 1.81 6.50 -2.39 -0.02 1.80 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.41 8.01 6.54 -92.71 -0.61 7.41 16 40 H 0.16 1.54 6.45 -2.91 -0.02 1.53 16 41 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 42 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 2.37 5.80 -2.39 -0.01 2.36 16 45 H 0.07 1.65 6.66 -2.39 -0.02 1.63 16 Total: -1.00 -70.54 381.90 3.01 -67.53 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.41 Total: 13.70 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 6.21 Total: 15.48 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -4.03 Total: -102.99 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -1.53 Total: -40.81 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.07 Total: -1.17 kcal Total: -70.54 3.01 -67.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701002281.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.873 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds