Wall clock time and date at job start Tue Mar 31 2020 23:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48503 * 109.46574 * 239.99742 * 3 2 1 5 5 H 1.48494 * 109.47358 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47131 * 120.00044 * 3 2 1 7 7 C 1.38793 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99825 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00482 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00271 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46935 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00209 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99750 * 180.02562 * 11 10 9 14 14 C 1.46967 * 120.59530 * 179.97438 * 13 11 10 15 15 C 1.53369 * 108.63530 * 124.74661 * 14 13 11 16 16 N 1.46968 * 108.63177 * 49.42893 * 15 14 13 17 17 C 1.34778 * 120.59488 * 124.74832 * 16 15 14 18 18 O 1.21276 * 120.00049 * 175.07397 * 17 16 15 19 19 C 1.50702 * 119.99968 * 355.07119 * 17 16 15 20 20 C 1.52996 * 119.80860 * 293.86084 * 19 17 16 21 21 C 1.53009 * 60.65259 * 247.68929 * 20 19 17 22 22 H 1.08994 * 119.80772 * 112.31058 * 21 20 19 23 23 C 1.54481 * 118.06285 * 269.59394 * 21 20 19 24 24 O 1.44424 * 104.80404 * 86.82421 * 23 21 20 25 25 C 1.46772 * 105.42245 * 319.29005 * 24 23 21 26 26 C 1.46964 * 118.81448 * 304.77280 * 16 15 14 27 27 C 1.46968 * 120.59488 * 359.97438 * 13 11 10 28 28 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46854 * 59.99899 * 10 9 7 30 30 H 1.08996 * 109.46946 * 299.99955 * 10 9 7 31 31 H 1.09004 * 109.60934 * 5.00695 * 14 13 11 32 32 H 1.08991 * 109.61190 * 244.49560 * 14 13 11 33 33 H 1.08999 * 109.61006 * 169.16506 * 15 14 13 34 34 H 1.08993 * 109.61346 * 289.51381 * 15 14 13 35 35 H 1.09002 * 117.43121 * 355.35787 * 20 19 17 36 36 H 1.08994 * 117.43727 * 140.06838 * 20 19 17 37 37 H 1.08994 * 110.37186 * 205.65707 * 23 21 20 38 38 H 1.09002 * 110.37176 * 327.99435 * 23 21 20 39 39 H 1.08994 * 110.29529 * 282.46574 * 25 24 23 40 40 H 1.09002 * 111.53497 * 159.38207 * 25 24 23 41 41 H 1.08991 * 109.61302 * 174.96840 * 26 16 15 42 42 H 1.09003 * 109.60674 * 295.48698 * 26 16 15 43 43 H 1.09003 * 109.60516 * 115.50618 * 27 13 11 44 44 H 1.09001 * 109.74674 * 355.07805 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2855 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3431 0.0003 14 6 2.3430 -7.7247 0.0003 15 6 2.9550 -8.4680 -1.1936 16 7 4.4070 -8.2412 -1.1935 17 6 5.2638 -9.2817 -1.1931 18 8 6.4570 -9.0846 -1.2833 19 6 4.7390 -10.6899 -1.0806 20 6 4.0525 -11.1449 0.2088 21 6 5.4042 -11.7505 -0.1750 22 1 6.2860 -11.5330 0.4275 23 6 5.4077 -13.0318 -1.0380 24 8 5.3518 -12.5586 -2.4014 25 6 4.4011 -11.4405 -2.3878 26 6 4.9082 -6.8597 -1.1934 27 6 4.2961 -6.1164 0.0008 28 1 -0.4849 0.8401 -0.0004 29 1 3.1244 -3.7314 0.8906 30 1 3.1244 -3.7314 -0.8894 31 1 1.2567 -7.7199 -0.0897 32 1 2.6335 -8.2193 0.9271 33 1 2.7514 -9.5350 -1.1036 34 1 2.5232 -8.0900 -2.1202 35 1 4.0353 -10.4435 1.0430 36 1 3.1725 -11.7806 0.1118 37 1 6.3229 -13.5995 -0.8706 38 1 4.5341 -13.6435 -0.8125 39 1 3.3779 -11.8146 -2.3568 40 1 4.5409 -10.7860 -3.2482 41 1 5.9944 -6.8645 -1.1034 42 1 4.6176 -6.3651 -2.1203 43 1 4.7254 -6.4967 0.9278 44 1 4.5023 -5.0497 -0.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703069459.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:19 Heat of formation + Delta-G solvation = -59.904067 kcal Electronic energy + Delta-G solvation = -27362.695300 eV Core-core repulsion = 23408.222088 eV Total energy + Delta-G solvation = -3954.473212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42270 -40.05508 -38.91379 -36.97531 -35.15263 -34.12704 -32.46960 -31.96716 -29.92174 -29.13698 -27.56707 -25.96603 -25.53033 -24.54755 -23.64715 -22.09262 -21.58550 -19.97983 -18.67114 -17.89211 -17.46535 -16.86657 -16.28653 -16.22728 -16.06117 -15.79437 -15.53856 -15.39550 -15.14884 -14.83990 -14.42168 -14.09310 -13.95671 -13.75701 -13.45490 -13.39387 -13.11775 -12.83158 -12.54585 -12.44786 -12.01754 -11.97215 -11.79270 -11.69626 -11.57717 -11.26730 -11.08694 -11.06898 -10.80667 -10.76355 -10.26247 -9.97758 -9.86284 -9.53559 -9.43210 -9.09807 -8.50057 -8.29547 -6.55819 -6.25718 -3.97125 2.12810 2.35056 2.74540 2.87419 2.92081 3.20895 3.22197 3.26362 3.42570 3.50228 3.81041 3.92265 3.98519 4.16087 4.36067 4.45377 4.48717 4.53810 4.71395 4.77893 4.83573 4.95180 5.00504 5.02643 5.08730 5.09721 5.15212 5.18167 5.21877 5.26915 5.39780 5.41495 5.51597 5.52709 5.64865 5.67756 5.78485 6.02316 6.06101 6.10510 6.41637 6.94869 7.37282 7.55202 7.76147 8.30665 8.40769 9.19602 10.81573 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.002171 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.795264 B =12896.807907 C =13396.407338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.537 3.463 12 O -0.513 6.513 13 N -0.622 5.622 14 C 0.100 3.900 15 C 0.093 3.907 16 N -0.605 5.605 17 C 0.562 3.438 18 O -0.530 6.530 19 C -0.204 4.204 20 C -0.123 4.123 21 C -0.155 4.155 22 H 0.128 0.872 23 C 0.074 3.926 24 O -0.370 6.370 25 C 0.094 3.906 26 C 0.096 3.904 27 C 0.096 3.904 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.476 -25.022 -0.646 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.325 3.675 12 O -0.387 6.387 13 N -0.359 5.359 14 C -0.024 4.024 15 C -0.031 4.031 16 N -0.338 5.338 17 C 0.349 3.651 18 O -0.405 6.405 19 C -0.208 4.208 20 C -0.160 4.160 21 C -0.174 4.174 22 H 0.146 0.854 23 C -0.003 4.003 24 O -0.289 6.289 25 C 0.017 3.983 26 C -0.027 4.027 27 C -0.028 4.028 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.287 -25.164 -0.899 26.508 hybrid contribution 1.932 1.514 0.236 2.466 sum 10.219 -23.650 -0.663 25.772 Atomic orbital electron populations 1.70009 1.05949 1.27621 1.46663 1.24993 0.95041 0.99044 0.94466 0.86221 0.79246 0.81198 0.78834 1.19910 1.20793 1.19915 1.22808 0.94848 0.91578 1.59224 0.90958 1.85404 1.04792 0.96364 1.96719 1.23563 1.06670 0.95253 1.04785 1.20389 0.86168 0.86191 0.74725 1.90697 1.15093 1.85136 1.47790 1.48062 1.06242 1.05649 1.75931 1.21885 1.01390 0.81797 0.97339 1.22232 0.79395 1.01605 0.99823 1.47993 1.06779 1.05969 1.73085 1.19140 0.85660 0.84505 0.75814 1.90718 1.15569 1.85126 1.49127 1.23173 1.09205 0.94159 0.94243 1.23332 0.95772 1.01685 0.95171 1.24405 0.98612 0.93131 1.01272 0.85360 1.22930 1.02886 0.93688 0.80757 1.89576 1.63961 1.48635 1.26744 1.23150 0.93195 0.87176 0.94762 1.22099 1.00915 0.80598 0.99091 1.22113 0.80299 1.02187 0.98210 0.92090 0.89170 0.89163 0.87461 0.91405 0.88471 0.90293 0.87190 0.87315 0.88089 0.91454 0.90433 0.88162 0.87768 0.90377 0.91009 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 8 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.92 4.50 36.00 0.16 -2.76 16 11 C 0.54 9.45 7.72 -10.99 -0.08 9.36 16 12 O -0.51 -10.91 15.27 5.56 0.08 -10.83 16 13 N -0.62 -7.90 2.95 -172.46 -0.51 -8.41 16 14 C 0.10 0.99 6.59 -3.60 -0.02 0.97 16 15 C 0.09 0.74 6.40 -3.60 -0.02 0.71 16 16 N -0.60 -5.74 2.95 -172.47 -0.51 -6.25 16 17 C 0.56 6.03 7.16 -10.98 -0.08 5.95 16 18 O -0.53 -7.73 16.51 5.56 0.09 -7.64 16 19 C -0.20 -1.59 1.22 -154.09 -0.19 -1.78 16 20 C -0.12 -0.63 8.65 -26.73 -0.23 -0.87 16 21 C -0.16 -1.06 7.11 -89.05 -0.63 -1.70 16 22 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 23 C 0.07 0.47 7.45 37.93 0.28 0.75 16 24 O -0.37 -3.50 11.72 -35.23 -0.41 -3.91 16 25 C 0.09 0.69 7.40 37.94 0.28 0.97 16 26 C 0.10 0.94 6.58 -3.58 -0.02 0.92 16 27 C 0.10 0.98 6.50 -3.58 -0.02 0.96 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.61 7.91 -51.91 -0.41 1.20 16 30 H 0.09 1.59 7.72 -51.92 -0.40 1.19 16 31 H 0.11 1.20 6.99 -51.93 -0.36 0.83 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.54 5.43 -51.93 -0.28 0.26 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.77 8.02 -51.93 -0.42 0.35 16 41 H 0.10 1.06 7.02 -51.93 -0.36 0.69 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.05 5.93 -51.93 -0.31 0.75 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -36.50 372.90 -8.84 -45.33 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.32 Total: -2.03 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.39 Total: 0.85 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.28 Total: -39.66 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.24 Total: -22.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.50 -8.84 -45.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703069459.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.570 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds