Wall clock time and date at job start Tue Mar 31 2020 23:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86810 * 119.99530 * 2 1 4 4 H 1.48499 * 109.46642 * 269.99699 * 3 2 1 5 5 H 1.48493 * 109.46972 * 30.00104 * 3 2 1 6 6 H 1.48502 * 109.46695 * 150.00377 * 3 2 1 7 7 C 1.38792 * 120.00487 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99967 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00268 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99958 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47303 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99479 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00338 * 179.97438 * 11 10 9 14 14 C 1.48146 * 127.83808 * 179.97438 * 13 11 10 15 15 C 1.54389 * 104.71947 * 140.47626 * 14 13 11 16 16 H 1.08994 * 117.61915 * 244.72716 * 15 14 13 17 17 C 1.54285 * 104.95978 * 23.80837 * 15 14 13 18 18 H 1.08999 * 121.82014 * 223.07681 * 17 15 14 19 19 C 1.48252 * 127.89173 * 359.88721 * 13 11 10 20 20 C 1.53000 * 59.72338 * 114.13817 * 17 15 14 21 21 H 1.09000 * 117.44690 * 252.34997 * 20 17 15 22 22 N 1.46500 * 117.44139 * 107.64682 * 20 17 15 23 23 C 1.34778 * 119.99985 * 135.76697 * 22 20 17 24 24 O 1.21278 * 119.99723 * 359.97438 * 23 22 20 25 25 C 1.50702 * 120.00099 * 180.02562 * 23 22 20 26 26 H 1.08995 * 110.33329 * 57.24312 * 25 23 22 27 27 C 1.54485 * 110.36829 * 294.99507 * 25 23 22 28 28 C 1.54506 * 104.06190 * 217.18898 * 27 25 23 29 29 C 1.54486 * 104.06324 * 0.02562 * 28 27 25 30 30 O 1.44421 * 110.37061 * 179.61529 * 25 23 22 31 31 H 0.97005 * 120.00613 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47580 * 60.00399 * 10 9 7 33 33 H 1.09005 * 109.47468 * 299.99931 * 10 9 7 34 34 H 1.09002 * 110.40776 * 21.63373 * 14 13 11 35 35 H 1.09002 * 110.40863 * 259.31781 * 14 13 11 36 36 H 1.09000 * 110.30697 * 100.74000 * 19 13 11 37 37 H 1.09002 * 110.43781 * 338.35670 * 19 13 11 38 38 H 0.97000 * 119.99863 * 315.75936 * 22 20 17 39 39 H 1.08999 * 110.51348 * 335.83663 * 27 25 23 40 40 H 1.09000 * 110.50874 * 98.54394 * 27 25 23 41 41 H 1.09003 * 110.51077 * 118.64355 * 28 27 25 42 42 H 1.08999 * 110.51479 * 241.22237 * 28 27 25 43 43 H 1.09002 * 110.37348 * 142.80263 * 29 28 27 44 44 H 1.08992 * 110.37179 * 265.14760 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2018 -0.0001 10 6 4.0867 -2.9843 0.0001 11 6 5.5732 -3.2323 -0.0010 12 8 6.3441 -2.2960 -0.0015 13 7 6.0459 -4.4944 -0.0005 14 6 7.4603 -4.9351 -0.0020 15 6 7.4934 -6.1506 0.9494 16 1 8.0751 -6.0588 1.8665 17 6 6.0490 -6.6928 0.9533 18 1 5.5547 -7.0048 1.8733 19 6 5.2696 -5.7574 0.0034 20 6 7.1861 -7.5314 0.3662 21 1 7.2234 -7.6386 -0.7179 22 7 7.6270 -8.7006 1.1309 23 6 7.8561 -9.8702 0.5016 24 8 7.6967 -9.9548 -0.6977 25 6 8.3092 -11.0731 1.2883 26 1 7.5909 -11.3035 2.0751 27 6 9.7085 -10.8238 1.8936 28 6 10.4134 -12.1945 1.7863 29 6 9.3569 -13.1096 1.1283 30 8 8.4823 -12.2095 0.4140 31 1 -0.4851 0.8400 0.0004 32 1 3.6435 -3.4316 -0.8896 33 1 3.6441 -3.4312 0.8904 34 1 8.1061 -4.1412 0.3731 35 1 7.7655 -5.2299 -1.0060 36 1 5.2310 -6.1809 -1.0002 37 1 4.2625 -5.5840 0.3827 38 1 7.7542 -8.6329 2.0902 39 1 10.2459 -10.0716 1.3162 40 1 9.6245 -10.5181 2.9365 41 1 11.2995 -12.1200 1.1558 42 1 10.6802 -12.5653 2.7760 43 1 9.8342 -13.8039 0.4368 44 1 8.7995 -13.6543 1.8902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703975045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:16 Heat of formation + Delta-G solvation = -71.436344 kcal Electronic energy + Delta-G solvation = -26031.621679 eV Core-core repulsion = 22076.648390 eV Total energy + Delta-G solvation = -3954.973289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05311 -40.32357 -38.89392 -38.01808 -35.05222 -33.07152 -32.45325 -32.37573 -30.30826 -29.71530 -28.33687 -25.84977 -25.51461 -24.28190 -22.17851 -21.81887 -21.01934 -20.57453 -19.52062 -18.13741 -17.76634 -17.42926 -16.99368 -16.59850 -15.92552 -15.78605 -15.36240 -15.28371 -14.95419 -14.90053 -14.33229 -14.06446 -13.99700 -13.83299 -13.43827 -13.26202 -12.83586 -12.81768 -12.57100 -12.42043 -12.35052 -12.04164 -11.97141 -11.88327 -11.42910 -11.29441 -11.27250 -11.01599 -10.65556 -10.60221 -10.49044 -10.13870 -9.86320 -9.55469 -9.27618 -9.01403 -8.76480 -8.51623 -6.93731 -6.29734 -4.01972 2.01076 2.17160 2.63939 2.88767 3.15023 3.18125 3.32807 3.41925 3.49715 3.57503 3.81285 4.00319 4.17424 4.19074 4.24285 4.32144 4.38094 4.40045 4.51339 4.63954 4.65944 4.76805 4.82110 4.91581 5.06549 5.09293 5.12672 5.18442 5.21408 5.25855 5.33853 5.37982 5.47876 5.59863 5.64224 5.70991 5.77030 5.93799 5.98504 6.11154 6.14743 6.90376 7.54299 7.68253 7.93131 8.37096 8.40668 9.16306 10.79386 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.037360 B = 0.001715 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.283498 B =16323.934878 C =16728.600089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.118 4.118 11 C 0.555 3.445 12 O -0.516 6.516 13 N -0.628 5.628 14 C 0.135 3.865 15 C -0.179 4.179 16 H 0.124 0.876 17 C -0.182 4.182 18 H 0.126 0.874 19 C 0.129 3.871 20 C 0.123 3.877 21 H 0.141 0.859 22 N -0.699 5.699 23 C 0.524 3.476 24 O -0.510 6.510 25 C 0.058 3.942 26 H 0.098 0.902 27 C -0.146 4.146 28 C -0.154 4.154 29 C 0.041 3.959 30 O -0.344 6.344 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.404 0.596 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.493 -26.638 7.430 34.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.269 4.269 11 C 0.344 3.656 12 O -0.390 6.390 13 N -0.365 5.365 14 C 0.012 3.988 15 C -0.200 4.200 16 H 0.142 0.858 17 C -0.203 4.203 18 H 0.143 0.857 19 C 0.006 3.994 20 C 0.017 3.983 21 H 0.159 0.841 22 N -0.350 5.350 23 C 0.309 3.691 24 O -0.383 6.383 25 C -0.003 4.003 26 H 0.116 0.884 27 C -0.185 4.185 28 C -0.192 4.192 29 C -0.036 4.036 30 O -0.262 6.262 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.238 0.762 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.202 -25.123 6.306 33.474 hybrid contribution -0.730 -0.360 0.908 1.219 sum 20.472 -25.483 7.214 33.474 Atomic orbital electron populations 1.69935 1.05901 1.27780 1.47996 1.24703 0.94444 0.98945 0.93149 0.86740 0.81882 0.83293 0.79970 1.19175 1.19915 1.15941 1.22303 0.88170 0.97568 1.58882 0.89354 1.84793 1.09406 0.99892 1.97428 1.23262 0.93473 1.04345 1.05779 1.19956 0.90566 0.80189 0.74885 1.90714 1.58904 1.40965 1.48439 1.49244 1.06968 1.05056 1.75265 1.21632 0.84201 0.94534 0.98413 1.24184 1.00015 0.93011 1.02759 0.85774 1.24258 0.91033 1.02141 1.02885 0.85653 1.21832 0.95826 0.82812 0.98965 1.21668 0.98132 0.81480 0.97029 0.84115 1.45169 1.69110 1.09333 1.11391 1.20217 0.77156 0.83467 0.88253 1.90765 1.49348 1.83689 1.14516 1.22847 0.98298 0.86935 0.92231 0.88431 1.22949 0.94214 0.99116 1.02174 1.22951 0.99540 0.94491 1.02215 1.23526 0.90598 0.92970 0.96498 1.89299 1.68095 1.28962 1.39801 0.91924 0.88443 0.88467 0.89076 0.90716 0.90287 0.88952 0.76176 0.89901 0.89353 0.90170 0.89920 0.88384 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 2 C 0.10 2.81 5.50 -17.44 -0.10 2.72 16 3 Si 0.86 21.77 27.74 -169.99 -4.72 17.05 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -15.02 10.04 30.94 0.31 -14.70 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.31 5.14 36.01 0.19 -2.13 16 11 C 0.56 10.12 7.93 -10.99 -0.09 10.03 16 12 O -0.52 -11.31 16.13 5.56 0.09 -11.22 16 13 N -0.63 -8.46 3.32 -169.20 -0.56 -9.02 16 14 C 0.14 1.45 6.85 -2.41 -0.02 1.44 16 15 C -0.18 -1.39 7.06 -89.22 -0.63 -2.02 16 16 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.18 -1.45 7.06 -89.20 -0.63 -2.08 16 18 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 19 C 0.13 1.31 6.72 -2.33 -0.02 1.29 16 20 C 0.12 0.95 5.98 -67.93 -0.41 0.55 16 21 H 0.14 1.33 7.40 -51.93 -0.38 0.94 16 22 N -0.70 -4.30 5.55 -53.80 -0.30 -4.60 16 23 C 0.52 4.65 7.08 -10.98 -0.08 4.57 16 24 O -0.51 -7.06 16.12 -13.66 -0.22 -7.28 16 25 C 0.06 0.36 3.71 -27.10 -0.10 0.26 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 C -0.15 -0.54 6.61 -25.16 -0.17 -0.71 16 28 C -0.15 -0.51 7.09 -25.16 -0.18 -0.69 16 29 C 0.04 0.20 7.63 37.94 0.29 0.49 16 30 O -0.34 -3.14 10.91 -54.45 -0.59 -3.73 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 33 H 0.10 1.76 7.95 -51.91 -0.41 1.35 16 34 H 0.09 1.07 7.88 -51.93 -0.41 0.66 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.92 7.32 -51.93 -0.38 0.54 16 38 H 0.40 1.23 8.83 -40.82 -0.36 0.87 16 39 H 0.08 0.38 7.86 -51.93 -0.41 -0.03 16 40 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -37.97 380.77 -9.98 -47.95 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.58 Total: -2.62 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -1.62 Total: -0.98 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.09 Total: -39.33 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.72 Total: -22.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.97 -9.98 -47.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703975045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.484 kcal (2) G-P(sol) polarization free energy of solvation -37.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds