Wall clock time and date at job start Tue Mar 31 2020 23:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48500 * 109.47090 * 270.00072 * 3 2 1 5 5 H 1.48501 * 109.47117 * 30.00762 * 3 2 1 6 6 H 1.48501 * 109.46687 * 150.00457 * 3 2 1 7 7 C 1.38803 * 120.00200 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00192 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99679 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46814 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00404 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99413 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99461 * 180.02562 * 13 11 10 15 15 C 1.53946 * 113.73897 * 251.67149 * 14 13 11 16 16 N 1.47580 * 86.11645 * 222.04787 * 15 14 13 17 17 C 1.34777 * 134.49108 * 204.63952 * 16 15 14 18 18 O 1.21282 * 119.99725 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00226 * 0.02562 * 17 16 15 20 20 H 1.09004 * 115.56238 * 325.77628 * 19 17 16 21 21 C 1.53184 * 117.51837 * 111.62659 * 19 17 16 22 22 C 1.52108 * 117.52146 * 179.97438 * 19 17 16 23 23 C 1.53707 * 121.74840 * 3.66143 * 22 19 17 24 24 C 1.54695 * 103.69361 * 143.51921 * 23 22 19 25 25 O 1.44501 * 104.87336 * 23.83032 * 24 23 22 26 26 C 1.44644 * 105.46086 * 320.02893 * 25 24 23 27 27 C 1.47578 * 91.01436 * 24.64483 * 16 15 14 28 28 H 0.97005 * 120.00307 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47254 * 60.00359 * 10 9 7 30 30 H 1.08994 * 109.47157 * 300.00102 * 10 9 7 31 31 H 0.96995 * 120.00725 * 0.02562 * 13 11 10 32 32 H 1.08999 * 112.94812 * 23.40761 * 14 13 11 33 33 H 1.08996 * 113.77105 * 336.35199 * 15 14 13 34 34 H 1.09002 * 113.76556 * 107.75132 * 15 14 13 35 35 H 1.08997 * 117.52478 * 214.84226 * 21 19 17 36 36 H 1.09000 * 117.52290 * 0.02562 * 21 19 17 37 37 H 1.09006 * 110.58281 * 262.07007 * 23 22 19 38 38 H 1.09001 * 110.58061 * 24.81353 * 23 22 19 39 39 H 1.09000 * 110.36535 * 142.68087 * 24 23 22 40 40 H 1.09000 * 110.35943 * 264.87425 * 24 23 22 41 41 H 1.08993 * 110.41652 * 280.88825 * 26 25 24 42 42 H 1.08999 * 110.41995 * 158.42759 * 26 25 24 43 43 H 1.09004 * 113.76602 * 221.05705 * 27 16 15 44 44 H 1.08991 * 113.77467 * 89.65934 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0007 14 6 2.3305 -7.7151 0.0008 15 6 2.5276 -8.4506 1.3387 16 7 2.9112 -9.6200 0.5244 17 6 2.9016 -10.9531 0.7226 18 8 3.2878 -11.6990 -0.1523 19 6 2.4110 -11.5169 2.0312 20 1 2.6252 -10.9132 2.9132 21 6 1.0983 -12.3062 2.0142 22 6 2.4242 -13.0292 2.1940 23 6 2.9933 -13.9548 1.1069 24 6 3.6709 -15.0898 1.9102 25 8 2.9999 -15.0902 3.1900 26 6 2.8068 -13.6963 3.5245 27 6 3.3096 -8.7435 -0.5940 28 1 -0.4851 0.8401 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1245 -3.7313 -0.8905 31 1 3.8010 -6.1835 0.0012 32 1 1.3191 -7.7901 -0.3984 33 1 3.3410 -8.0509 1.9442 34 1 1.6054 -8.5914 1.9026 35 1 0.4485 -12.2218 2.8851 36 1 0.5901 -12.4178 1.0564 37 1 2.1919 -14.3521 0.4838 38 1 3.7246 -13.4247 0.4966 39 1 3.5297 -16.0468 1.4078 40 1 4.7334 -14.8823 2.0374 41 1 3.7302 -13.2672 3.9133 42 1 2.0008 -13.5875 4.2502 43 1 3.0118 -9.1182 -1.5734 44 1 4.3527 -8.4299 -0.5564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704503990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:42 Heat of formation + Delta-G solvation = -71.291729 kcal Electronic energy + Delta-G solvation = -25976.166193 eV Core-core repulsion = 22021.199175 eV Total energy + Delta-G solvation = -3954.967018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.91182 -41.03611 -40.00848 -38.78848 -36.72798 -34.93424 -34.55627 -31.65049 -31.13985 -29.68272 -28.26298 -27.62614 -27.36384 -24.95066 -23.70778 -22.75935 -21.80706 -20.86752 -19.91466 -19.68547 -18.39016 -18.01673 -17.50869 -17.26049 -16.93861 -16.85481 -16.66485 -16.32003 -16.26305 -16.08552 -15.62473 -14.96024 -14.71604 -14.56110 -14.51622 -14.16405 -13.84120 -13.77302 -13.59928 -13.48507 -13.16731 -13.14647 -13.12724 -12.87790 -12.59899 -12.46010 -12.33850 -11.96634 -11.71013 -11.52959 -11.17846 -11.12222 -10.98319 -10.78209 -10.49778 -10.23689 -10.17481 -9.85246 -8.63126 -8.32651 -6.09757 1.25728 1.31690 1.43904 1.44201 1.54480 1.59126 1.66933 2.28711 2.36294 2.59231 2.97662 3.01919 3.09267 3.34301 3.37256 3.55689 3.64688 3.72142 3.81777 3.95322 3.97250 4.11200 4.20938 4.31162 4.36745 4.41243 4.44035 4.50260 4.57496 4.59391 4.63816 4.69651 4.74303 4.79170 4.85436 4.92005 4.95031 5.01477 5.22295 5.42551 5.44740 5.77229 6.22078 6.45341 6.56372 7.00873 7.09381 7.23932 8.76263 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.038529 B = 0.001613 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.558568 B =17352.062974 C =17527.841448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.541 3.459 12 O -0.561 6.561 13 N -0.699 5.699 14 C 0.114 3.886 15 C 0.095 3.905 16 N -0.640 5.640 17 C 0.563 3.437 18 O -0.569 6.569 19 C -0.168 4.168 20 H 0.150 0.850 21 C -0.123 4.123 22 C -0.138 4.138 23 C -0.129 4.129 24 C 0.045 3.955 25 O -0.395 6.395 26 C 0.082 3.918 27 C 0.105 3.895 28 H 0.270 0.730 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.422 0.578 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.147 -25.280 6.065 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.327 3.673 12 O -0.438 6.438 13 N -0.354 5.354 14 C 0.007 3.993 15 C -0.028 4.028 16 N -0.375 5.375 17 C 0.355 3.645 18 O -0.450 6.450 19 C -0.189 4.189 20 H 0.168 0.832 21 C -0.161 4.161 22 C -0.138 4.138 23 C -0.166 4.166 24 C -0.032 4.032 25 O -0.314 6.314 26 C 0.006 3.994 27 C -0.018 4.018 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.260 0.740 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.115 0.885 35 H 0.152 0.848 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.167 -26.322 5.757 28.461 hybrid contribution 1.903 1.611 -0.447 2.533 sum 11.070 -24.711 5.311 27.593 Atomic orbital electron populations 1.70177 1.07943 1.28536 1.48110 1.26089 0.95911 1.03244 0.93842 0.84988 0.78273 0.76243 0.78697 1.19497 1.20497 1.18115 1.23218 0.95399 0.92067 1.58659 0.89787 1.85589 1.10620 0.99243 1.97062 1.23390 1.03541 0.94164 1.07134 1.20053 0.86188 0.86592 0.74465 1.90713 1.17455 1.85965 1.49683 1.45549 1.10478 1.03828 1.75507 1.22897 0.99492 0.79825 0.97093 1.23920 1.02527 0.81014 0.95354 1.49693 1.64239 1.03761 1.19821 1.19714 0.76716 0.79860 0.88232 1.90608 1.50256 1.57512 1.46586 1.22128 1.05158 0.94705 0.96924 0.83234 1.23077 0.89141 0.98938 1.04906 1.22220 1.01954 0.91390 0.98274 1.22627 1.01398 0.95411 0.97146 1.23575 0.96338 0.99921 0.83327 1.89137 1.79475 1.25116 1.37683 1.22947 1.02109 0.80551 0.93784 1.23617 1.00272 0.85770 0.92158 0.92070 0.86739 0.87050 0.73966 0.87619 0.86599 0.88486 0.84784 0.88980 0.91456 0.88633 0.88148 0.91568 0.90575 0.86934 0.89742 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.62 13.22 21.65 0.29 -54.34 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 42.27 29.55 68.60 2.03 44.29 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.55 -29.89 9.50 67.96 0.65 -29.25 16 8 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 9 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 10 C -0.13 -4.59 6.16 71.24 0.44 -4.15 16 11 C 0.54 16.95 7.85 87.66 0.69 17.63 16 12 O -0.56 -23.17 15.46 -3.01 -0.05 -23.22 16 13 N -0.70 -13.02 5.36 -447.37 -2.40 -15.42 16 14 C 0.11 1.93 4.43 46.75 0.21 2.14 16 15 C 0.10 1.21 8.41 86.48 0.73 1.94 16 16 N -0.64 -10.27 3.61 -837.19 -3.02 -13.29 16 17 C 0.56 10.98 7.84 87.66 0.69 11.66 16 18 O -0.57 -14.89 14.07 -3.04 -0.04 -14.94 16 19 C -0.17 -2.30 5.83 -11.77 -0.07 -2.37 16 20 H 0.15 1.31 8.14 -2.38 -0.02 1.29 16 21 C -0.12 -1.56 10.00 30.35 0.30 -1.26 16 22 C -0.14 -2.02 2.50 -52.31 -0.13 -2.15 16 23 C -0.13 -2.28 5.98 31.41 0.19 -2.09 16 24 C 0.04 0.68 7.65 72.56 0.56 1.24 16 25 O -0.39 -7.11 11.65 -148.98 -1.74 -8.84 16 26 C 0.08 1.05 7.44 72.21 0.54 1.58 16 27 C 0.10 1.48 8.59 86.48 0.74 2.22 16 28 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 29 H 0.11 3.50 8.14 -2.40 -0.02 3.48 16 30 H 0.11 3.48 8.14 -2.40 -0.02 3.46 16 31 H 0.42 4.73 8.73 -92.71 -0.81 3.92 16 32 H 0.11 2.40 7.46 -2.39 -0.02 2.38 16 33 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.10 2.08 5.45 -2.39 -0.01 2.07 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 1.00 8.12 -2.39 -0.02 0.98 16 43 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.12 1.08 8.12 -2.39 -0.02 1.06 16 Total: -1.00 -80.15 384.19 0.11 -80.04 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.21 Total: 16.48 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 5.99 Total: -1.61 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -5.13 Total: -83.05 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -1.83 Total: -47.00 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -80.15 0.11 -80.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704503990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.748 kcal (2) G-P(sol) polarization free energy of solvation -80.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds