Wall clock time and date at job start Tue Mar 31 2020 23:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00687 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00633 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00348 * 3 2 1 7 7 C 1.38950 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99459 * 359.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 H 1.08993 * 109.47326 * 325.00220 * 14 13 12 16 16 C 1.53001 * 109.46830 * 85.00098 * 14 13 12 17 17 O 1.42897 * 109.47472 * 65.00184 * 16 14 13 18 18 C 1.53001 * 109.47245 * 204.99659 * 14 13 12 19 19 N 1.46499 * 109.46851 * 55.00305 * 18 14 13 20 20 C 1.34779 * 120.00187 * 179.97438 * 19 18 14 21 21 O 1.21525 * 119.99629 * 0.02562 * 20 19 18 22 22 C 1.48049 * 120.00237 * 179.97438 * 20 19 18 23 23 C 1.39373 * 119.69057 * 179.72541 * 22 20 19 24 24 C 1.38476 * 119.09158 * 179.79263 * 23 22 20 25 25 C 1.38896 * 118.46654 * 0.47728 * 24 23 22 26 26 F 1.35098 * 120.35213 * 179.76519 * 25 24 23 27 27 C 1.38874 * 119.30045 * 359.74741 * 25 24 23 28 28 N 1.31460 * 120.85457 * 0.02562 * 27 25 24 29 29 H 0.97009 * 120.00065 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 34 34 H 1.09005 * 109.46975 * 184.99983 * 16 14 13 35 35 H 1.08997 * 109.47675 * 304.99814 * 16 14 13 36 36 H 0.96703 * 114.00471 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.46903 * 175.00153 * 18 14 13 38 38 H 1.08999 * 109.47615 * 295.00519 * 18 14 13 39 39 H 0.97002 * 120.00261 * 359.97438 * 19 18 14 40 40 H 1.07997 * 120.45860 * 0.02770 * 23 22 20 41 41 H 1.08000 * 120.76029 * 180.22171 * 24 23 22 42 42 H 1.08000 * 119.57367 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4456 2.6527 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0536 -2.3705 -0.0011 11 8 3.4471 -3.4210 0.0044 12 6 5.5607 -2.3706 -0.0011 13 7 6.0503 -3.7556 0.0055 14 6 7.5187 -3.7948 0.0051 15 1 7.9042 -2.9659 -0.5885 16 6 8.0325 -3.6757 1.4414 17 8 7.6239 -4.8222 2.1900 18 6 7.9934 -5.1183 -0.5982 19 7 7.4042 -5.2876 -1.9287 20 6 7.6836 -6.3884 -2.6544 21 8 8.4240 -7.2408 -2.2047 22 6 7.0877 -6.5598 -3.9988 23 6 7.3856 -7.6980 -4.7459 24 6 6.8180 -7.8477 -6.0001 25 6 5.9774 -6.8469 -6.4701 26 9 5.4069 -6.9516 -7.6902 27 6 5.7292 -5.7375 -5.6724 28 7 6.2791 -5.6253 -4.4836 29 1 -0.4851 0.8401 0.0004 30 1 3.8647 -0.3633 -0.0007 31 1 5.9239 -1.8610 -0.8935 32 1 5.9240 -1.8525 0.8864 33 1 5.6747 -4.2756 -0.7734 34 1 9.1208 -3.6154 1.4341 35 1 7.6219 -2.7766 1.9008 36 1 7.9150 -4.8141 3.1122 37 1 9.0803 -5.1110 -0.6803 38 1 7.6831 -5.9424 0.0441 39 1 6.8130 -4.6074 -2.2875 40 1 8.0470 -8.4547 -4.3507 41 1 7.0274 -8.7206 -6.6006 42 1 5.0767 -4.9565 -6.0336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717764401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:50 Heat of formation + Delta-G solvation = -110.256880 kcal Electronic energy + Delta-G solvation = -28687.621405 eV Core-core repulsion = 24197.044306 eV Total energy + Delta-G solvation = -4490.577099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.47426 -40.94672 -39.41417 -38.57921 -37.61280 -35.65741 -34.24656 -33.75446 -32.95053 -31.72171 -31.60480 -30.13636 -26.50220 -26.38657 -24.64182 -24.09379 -23.65603 -21.13362 -20.64242 -19.45502 -18.79444 -18.31761 -17.96772 -17.77181 -17.49816 -16.46863 -16.32662 -15.97960 -15.63918 -15.52860 -15.22178 -14.94022 -14.60202 -14.52395 -14.27540 -14.08827 -13.89594 -13.73985 -13.51121 -13.41252 -13.07469 -12.96495 -12.63740 -12.38716 -12.20374 -11.75009 -11.70618 -11.19051 -11.10540 -10.62912 -10.60466 -10.48970 -10.06270 -9.98133 -9.96132 -9.57437 -9.52340 -9.21569 -8.58727 -8.21777 -8.16177 -6.31019 -3.82424 0.05147 0.58683 2.33162 2.77900 3.01430 3.05366 3.14112 3.36523 3.44884 3.72214 3.74672 3.94139 4.09722 4.19427 4.24187 4.27182 4.38911 4.60637 4.74835 4.82572 5.03168 5.18486 5.20519 5.22486 5.28739 5.33505 5.34761 5.49435 5.54253 5.58466 5.75790 5.88274 5.97287 6.02704 6.16190 7.00465 7.03100 7.31197 7.47294 7.57946 7.69395 7.89665 8.14611 8.59771 8.95284 9.42301 9.82794 10.82163 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.002984 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.891124 B = 9380.710354 C =12024.977183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.560 6.560 12 C 0.045 3.955 13 N -0.653 5.653 14 C 0.075 3.925 15 H 0.062 0.938 16 C 0.092 3.908 17 O -0.553 6.553 18 C 0.120 3.880 19 N -0.710 5.710 20 C 0.576 3.424 21 O -0.530 6.530 22 C 0.067 3.933 23 C -0.082 4.082 24 C -0.116 4.116 25 C 0.071 3.929 26 F -0.123 7.123 27 C 0.080 3.920 28 N -0.428 5.428 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.352 0.648 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.374 0.626 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.410 0.590 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.778 -8.414 -8.947 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.236 3.764 11 O -0.442 6.442 12 C -0.088 4.088 13 N -0.289 5.289 14 C -0.035 4.035 15 H 0.080 0.920 16 C 0.012 3.988 17 O -0.357 6.357 18 C -0.003 4.003 19 N -0.362 5.362 20 C 0.361 3.639 21 O -0.407 6.407 22 C -0.071 4.071 23 C -0.103 4.103 24 C -0.143 4.143 25 C 0.049 3.951 26 F -0.102 7.102 27 C -0.081 4.081 28 N -0.138 5.138 29 H 0.084 0.916 30 H 0.202 0.798 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.174 0.826 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.220 0.780 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.246 0.754 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 20.188 -9.118 -7.997 23.551 hybrid contribution 0.653 1.594 -1.328 2.175 sum 20.841 -7.524 -9.325 24.040 Atomic orbital electron populations 1.69622 1.05645 1.27462 1.49429 1.25034 0.95483 0.97943 0.97708 0.86670 0.79779 0.84088 0.78816 1.19675 1.20210 1.19518 1.19433 0.79236 0.96634 1.47993 0.86284 1.42191 1.07518 1.06085 1.67243 1.19649 0.88067 0.84612 0.84096 1.90588 1.69312 1.30889 1.53370 1.21826 0.95454 0.90319 1.01194 1.60031 1.04516 1.12418 1.51939 1.21894 0.89799 0.96479 0.95374 0.92046 1.22064 0.96353 0.89111 0.91240 1.86611 1.80274 1.42692 1.26150 1.21570 0.97849 0.98765 0.82152 1.45888 1.49693 1.22555 1.18083 1.17640 0.80818 0.81991 0.83492 1.90803 1.36871 1.42081 1.70903 1.21254 0.97296 0.92580 0.95962 1.22045 0.97898 0.97661 0.92654 1.21701 0.96449 0.99312 0.96790 1.19088 0.96270 0.97151 0.82560 1.91563 1.82523 1.96035 1.40058 1.23019 0.98957 0.96727 0.89429 1.67620 1.05869 1.27992 1.12368 0.91628 0.79754 0.93670 0.89462 0.82612 0.93610 0.93053 0.78048 0.90666 0.88703 0.75362 0.82267 0.82630 0.80488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 9 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 10 C 0.45 10.11 7.82 -10.98 -0.09 10.03 16 11 O -0.56 -15.12 15.78 5.54 0.09 -15.03 16 12 C 0.04 0.71 5.96 -4.98 -0.03 0.68 16 13 N -0.65 -10.02 5.87 -107.99 -0.63 -10.65 16 14 C 0.08 0.85 2.60 -67.71 -0.18 0.67 16 15 H 0.06 0.58 7.80 -51.93 -0.40 0.17 16 16 C 0.09 0.92 6.80 37.16 0.25 1.17 16 17 O -0.55 -6.48 12.64 -35.23 -0.45 -6.92 16 18 C 0.12 1.39 5.20 -4.04 -0.02 1.37 16 19 N -0.71 -8.47 4.98 -61.19 -0.30 -8.78 16 20 C 0.58 7.40 7.81 -12.24 -0.10 7.31 16 21 O -0.53 -7.92 16.32 5.34 0.09 -7.83 16 22 C 0.07 0.76 6.75 -83.03 -0.56 0.20 16 23 C -0.08 -0.73 9.63 -39.07 -0.38 -1.10 16 24 C -0.12 -0.85 10.15 -39.25 -0.40 -1.25 16 25 C 0.07 0.60 7.36 -39.10 -0.29 0.32 16 26 F -0.12 -1.07 17.28 2.25 0.04 -1.04 16 27 C 0.08 0.75 11.17 -17.47 -0.20 0.55 16 28 N -0.43 -4.78 9.53 -9.75 -0.09 -4.88 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.37 7.57 5.76 -40.82 -0.24 7.33 16 31 H 0.05 0.60 8.05 -51.93 -0.42 0.18 16 32 H 0.09 1.24 7.36 -51.93 -0.38 0.85 16 33 H 0.35 5.77 6.41 -39.29 -0.25 5.52 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.51 7.35 -51.93 -0.38 0.13 16 36 H 0.37 2.69 9.12 45.56 0.42 3.10 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.33 7.39 -51.93 -0.38 0.94 16 39 H 0.41 4.78 6.69 -40.82 -0.27 4.50 16 40 H 0.16 1.23 7.64 -52.49 -0.40 0.83 16 41 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -36.40 368.51 -5.89 -42.29 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -3.96 Total: 19.49 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -2.22 Total: 12.24 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -0.31 Total: -63.17 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.27 Total: -29.79 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.40 -5.89 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717764401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.971 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds