Wall clock time and date at job start Wed Apr 1 2020 00:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00234 * 2 1 4 4 C 1.53003 * 109.47398 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46880 * 64.99842 * 4 3 2 6 6 C 1.36935 * 120.00413 * 275.22334 * 5 4 3 7 7 H 1.07990 * 120.00160 * 146.16339 * 6 5 4 8 8 C 1.38811 * 119.99477 * 326.15871 * 6 5 4 9 9 N 1.31616 * 120.00468 * 335.49292 * 8 6 5 10 10 Si 1.86804 * 119.99910 * 155.49359 * 8 6 5 11 11 H 1.48503 * 109.46722 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47276 * 119.99591 * 10 8 6 13 13 H 1.48495 * 109.47216 * 239.99971 * 10 8 6 14 14 C 1.46501 * 119.99602 * 95.22205 * 5 4 3 15 15 C 1.52997 * 109.47046 * 269.99783 * 14 5 4 16 16 N 1.46501 * 109.47046 * 179.97438 * 15 14 5 17 17 C 1.34781 * 120.00064 * 179.97438 * 16 15 14 18 18 O 1.21556 * 120.00099 * 0.02562 * 17 16 15 19 19 C 1.47792 * 119.99866 * 180.02562 * 17 16 15 20 20 C 1.39635 * 120.13032 * 353.80545 * 19 17 16 21 21 C 1.37872 * 119.86225 * 180.25433 * 20 19 17 22 22 C 1.38532 * 120.13291 * 0.02562 * 21 20 19 23 23 Cl 1.73609 * 119.86608 * 180.02562 * 22 21 20 24 24 C 1.38483 * 120.26868 * 0.02562 * 22 21 20 25 25 C 1.37920 * 120.12902 * 359.97438 * 24 22 21 26 26 C 1.50703 * 120.06579 * 179.97438 * 25 24 22 27 27 H 1.08997 * 109.47182 * 59.99915 * 1 2 3 28 28 H 1.09001 * 109.46817 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47014 * 299.99588 * 1 2 3 30 30 H 1.08995 * 109.46841 * 60.00170 * 3 2 1 31 31 H 1.08997 * 109.46709 * 300.00368 * 3 2 1 32 32 H 1.09003 * 109.46987 * 305.00380 * 4 3 2 33 33 H 1.09000 * 109.47180 * 185.00142 * 4 3 2 34 34 H 0.97001 * 119.99899 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.46973 * 149.99789 * 14 5 4 36 36 H 1.09000 * 109.47045 * 30.00040 * 14 5 4 37 37 H 1.08999 * 109.47230 * 60.00163 * 15 14 5 38 38 H 1.09000 * 109.47409 * 300.00034 * 15 14 5 39 39 H 0.97001 * 120.00142 * 359.97438 * 16 15 14 40 40 H 1.08001 * 120.06850 * 0.24589 * 20 19 17 41 41 H 1.08001 * 119.93204 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.94042 * 180.02562 * 24 22 21 43 43 H 1.08996 * 109.47017 * 264.80229 * 26 25 24 44 44 H 1.08998 * 109.46982 * 24.80562 * 26 25 24 45 45 H 1.09000 * 109.47049 * 144.80150 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 3.9944 -0.7997 -1.3716 7 1 3.7753 -1.2619 -2.3227 8 6 4.2952 -1.5882 -0.2695 9 7 5.0098 -1.0931 0.7187 10 14 3.6857 -3.3522 -0.1890 11 1 2.9097 -3.6643 -1.4161 12 1 4.8466 -4.2729 -0.0893 13 1 2.8159 -3.5215 1.0026 14 6 4.3958 1.4035 -2.3777 15 6 3.1851 1.7195 -3.2582 16 7 3.6051 2.5592 -4.3829 17 6 2.7004 2.9642 -5.2962 18 8 1.5359 2.6331 -5.1865 19 6 3.1242 3.8108 -6.4310 20 6 4.4308 4.2996 -6.4913 21 6 4.8188 5.0932 -7.5498 22 6 3.9151 5.4063 -8.5520 23 17 4.4113 6.4057 -9.8821 24 6 2.6176 4.9254 -8.4973 25 6 2.2178 4.1306 -7.4434 26 6 0.8054 3.6085 -7.3849 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8463 -0.8899 32 1 3.8515 0.5681 0.8409 33 1 3.9786 2.1765 0.0889 34 1 5.2202 -1.6444 1.4886 35 1 5.1447 0.8738 -2.9663 36 1 4.8219 2.3325 -1.9988 37 1 2.4361 2.2493 -2.6696 38 1 2.7590 0.7906 -3.6371 39 1 4.5342 2.8237 -4.4702 40 1 5.1360 4.0565 -5.7102 41 1 5.8292 5.4715 -7.5977 42 1 1.9177 5.1724 -9.2817 43 1 0.1976 4.2729 -6.7708 44 1 0.3919 3.5655 -8.3925 45 1 0.8051 2.6094 -6.9492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717975945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:03 Heat of formation + Delta-G solvation = -55.548215 kcal Electronic energy + Delta-G solvation = -27093.320123 eV Core-core repulsion = 23136.992089 eV Total energy + Delta-G solvation = -3956.328034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.47638 -39.58351 -38.88045 -37.55088 -37.35095 -35.87205 -33.72060 -33.32218 -32.28101 -30.87425 -29.16280 -28.00468 -27.15206 -25.85722 -24.70569 -23.50166 -22.51562 -22.16673 -21.47306 -18.96070 -18.57714 -17.57543 -17.27707 -17.12036 -16.69962 -16.65883 -16.34576 -16.11125 -15.93422 -15.63314 -15.38259 -15.09261 -14.71977 -14.62727 -14.24465 -14.18538 -13.72353 -13.57108 -13.41958 -13.33835 -13.21496 -13.00810 -12.72701 -12.48667 -12.41958 -12.37362 -12.31009 -12.26720 -11.90544 -11.86264 -11.71138 -11.52491 -10.76768 -10.44534 -10.34782 -10.11964 -9.97850 -9.69408 -8.58139 -7.75241 -5.30629 -0.39757 0.19523 1.01620 1.46065 1.52171 1.59424 1.72296 2.10464 2.60663 2.65283 3.21853 3.37478 3.61313 3.64570 3.73834 3.81942 4.08520 4.21291 4.24119 4.30736 4.41623 4.42863 4.51929 4.58328 4.67813 4.72549 4.73488 4.78145 4.80323 4.81603 4.90322 4.96600 5.01960 5.09631 5.12152 5.14209 5.23150 5.44557 5.53769 5.63815 5.74120 5.85444 6.46204 6.54359 6.67410 7.19898 7.24664 7.93592 8.39369 9.21562 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018446 B = 0.002301 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.563966 B =12166.933888 C =12737.552298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.054 3.946 4 C 0.133 3.867 5 N -0.586 5.586 6 C -0.239 4.239 7 H 0.045 0.955 8 C -0.018 4.018 9 N -0.913 5.913 10 Si 0.942 3.058 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.295 1.295 14 C 0.141 3.859 15 C 0.119 3.881 16 N -0.707 5.707 17 C 0.548 3.452 18 O -0.569 6.569 19 C -0.149 4.149 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.012 4.012 23 Cl -0.058 7.058 24 C -0.123 4.123 25 C -0.024 4.024 26 C -0.119 4.119 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.248 0.752 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.413 0.587 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 16.423 -16.485 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.025 4.025 4 C 0.007 3.993 5 N -0.306 5.306 6 C -0.370 4.370 7 H 0.063 0.937 8 C -0.215 4.215 9 N -0.558 5.558 10 Si 0.772 3.228 11 H -0.203 1.203 12 H -0.221 1.221 13 H -0.222 1.222 14 C 0.014 3.986 15 C -0.007 4.007 16 N -0.359 5.359 17 C 0.337 3.663 18 O -0.450 6.450 19 C -0.153 4.153 20 C -0.081 4.081 21 C -0.141 4.141 22 C -0.039 4.039 23 Cl -0.029 7.029 24 C -0.141 4.141 25 C -0.025 4.025 26 C -0.176 4.176 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.251 0.749 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.401 16.010 -16.348 23.008 hybrid contribution -0.350 -0.766 0.241 0.876 sum -2.752 15.244 -16.107 22.347 Atomic orbital electron populations 1.22796 0.82069 1.02439 0.99813 1.88159 1.19113 1.28691 1.95116 1.23314 0.97131 0.83981 0.98075 1.21136 0.89597 0.96728 0.91845 1.43739 1.74322 1.01930 1.10635 1.18877 1.39573 0.82437 0.96074 0.93743 1.25318 0.97750 1.00005 0.98422 1.70054 1.37999 1.37336 1.10401 0.85630 0.77600 0.82333 0.77231 1.20319 1.22102 1.22159 1.21057 0.92996 0.95138 0.89381 1.21944 0.99479 0.92581 0.86707 1.45825 1.12479 1.51940 1.25657 1.18624 0.85250 0.79880 0.82544 1.90716 1.19338 1.58845 1.76141 1.19911 0.96104 1.02790 0.96451 1.21534 0.94032 0.94373 0.98208 1.21260 1.00946 0.99157 0.92689 1.21319 0.94910 0.96347 0.91304 1.98393 1.91335 1.67566 1.45635 1.21070 0.95252 0.98487 0.99341 1.20097 0.96452 0.93894 0.92090 1.21043 0.91132 1.02614 1.02769 0.94503 0.90134 0.93363 0.93630 0.94818 0.90858 0.91852 0.94241 0.92736 0.91615 0.93304 0.94688 0.74949 0.82106 0.81805 0.82705 0.90914 0.90022 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.39 -17.58 9.93 -148.98 -1.48 -19.06 16 3 C 0.05 2.15 6.28 71.98 0.45 2.60 16 4 C 0.13 5.94 5.83 86.38 0.50 6.44 16 5 N -0.59 -27.40 2.46 -702.01 -1.73 -29.13 16 6 C -0.24 -12.87 8.71 84.03 0.73 -12.14 16 7 H 0.04 2.47 7.94 -2.92 -0.02 2.45 16 8 C -0.02 -0.99 4.96 84.86 0.42 -0.56 16 9 N -0.91 -52.37 11.35 21.65 0.25 -52.12 16 10 Si 0.94 46.39 29.62 68.60 2.03 48.42 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 12 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 13 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 14 C 0.14 5.17 5.82 86.38 0.50 5.67 16 15 C 0.12 4.14 6.00 86.38 0.52 4.66 16 16 N -0.71 -18.85 5.51 -466.02 -2.57 -21.42 16 17 C 0.55 15.88 7.70 86.77 0.67 16.55 16 18 O -0.57 -20.70 13.31 -3.89 -0.05 -20.75 16 19 C -0.15 -3.33 5.87 -20.09 -0.12 -3.45 16 20 C -0.06 -0.99 9.52 22.52 0.21 -0.77 16 21 C -0.12 -1.68 9.81 22.25 0.22 -1.46 16 22 C -0.01 -0.18 6.33 22.40 0.14 -0.04 16 23 Cl -0.06 -0.81 28.95 -2.72 -0.08 -0.89 16 24 C -0.12 -2.06 9.45 22.25 0.21 -1.85 16 25 C -0.02 -0.51 5.91 -19.61 -0.12 -0.62 16 26 C -0.12 -2.63 8.78 71.24 0.63 -2.00 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.30 6.53 -2.39 -0.02 1.29 16 32 H 0.07 3.88 5.36 -2.39 -0.01 3.87 16 33 H 0.06 2.46 7.83 -2.39 -0.02 2.45 16 34 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.05 2.00 8.04 -2.39 -0.02 1.98 16 36 H 0.07 2.07 7.86 -2.39 -0.02 2.06 16 37 H 0.05 1.82 6.53 -2.39 -0.02 1.80 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.41 7.98 6.54 -92.71 -0.61 7.38 16 40 H 0.16 1.68 6.45 -2.91 -0.02 1.66 16 41 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.34 8.05 -2.39 -0.02 1.33 16 45 H 0.07 2.10 5.75 -2.39 -0.01 2.08 16 Total: -1.00 -68.56 384.59 3.00 -65.56 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.40 Total: 14.26 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.22 Total: 15.14 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -4.05 Total: -102.67 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.53 Total: -39.81 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -68.56 3.00 -65.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717975945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.008 kcal (2) G-P(sol) polarization free energy of solvation -68.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds