Wall clock time and date at job start Tue Mar 31 2020 23:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86802 * 120.00100 * 2 1 4 4 H 1.48501 * 109.46655 * 239.99215 * 3 2 1 5 5 H 1.48497 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46971 * 119.99569 * 3 2 1 7 7 C 1.38803 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99884 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.80990 * 100.00123 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47282 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00119 * 5.17914 * 11 10 9 13 13 N 1.34785 * 120.00093 * 185.17627 * 11 10 9 14 14 C 1.46502 * 119.99512 * 175.40869 * 13 11 10 15 15 C 1.52994 * 115.55148 * 59.11574 * 14 13 11 16 16 N 1.46502 * 109.47418 * 81.27263 * 15 14 13 17 17 C 1.34774 * 120.00448 * 184.88761 * 16 15 14 18 18 O 1.21613 * 119.99904 * 5.07287 * 17 16 15 19 19 C 1.47102 * 120.00464 * 185.07440 * 17 16 15 20 20 C 1.32080 * 118.87874 * 185.26377 * 19 17 16 21 21 C 1.50268 * 122.58080 * 180.14555 * 20 19 17 22 22 O 1.42893 * 110.14284 * 344.80049 * 21 20 19 23 23 C 1.43269 * 113.10107 * 50.33026 * 22 21 20 24 24 C 1.50415 * 118.87216 * 5.52849 * 19 17 16 25 25 C 1.52996 * 117.49946 * 273.44050 * 14 13 11 26 26 C 1.53005 * 117.49525 * 204.78170 * 14 13 11 27 27 H 0.96995 * 119.99925 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47421 * 59.99798 * 10 9 7 29 29 H 1.09004 * 109.47299 * 299.99908 * 10 9 7 30 30 H 0.96993 * 119.99542 * 355.13450 * 13 11 10 31 31 H 1.09004 * 109.47320 * 201.27405 * 15 14 13 32 32 H 1.09001 * 109.47119 * 321.27630 * 15 14 13 33 33 H 0.97004 * 119.99916 * 4.88995 * 16 15 14 34 34 H 1.08000 * 118.71213 * 0.36955 * 20 19 17 35 35 H 1.09002 * 109.50231 * 224.49434 * 21 20 19 36 36 H 1.09001 * 109.07878 * 104.84030 * 21 20 19 37 37 H 1.08998 * 109.64447 * 171.47246 * 23 22 21 38 38 H 1.09010 * 109.63741 * 50.85599 * 23 22 21 39 39 H 1.08999 * 109.45946 * 283.35317 * 24 19 17 40 40 H 1.09002 * 109.45444 * 43.29399 * 24 19 17 41 41 H 1.08997 * 117.49703 * 0.02562 * 25 14 13 42 42 H 1.08999 * 117.49866 * 145.02531 * 25 14 13 43 43 H 1.08994 * 117.49779 * 214.98513 * 26 14 13 44 44 H 1.09007 * 117.49572 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7949 -5.5039 -0.0932 13 7 2.8396 -6.3415 0.1066 14 6 2.3203 -7.7076 0.2085 15 6 1.4504 -8.1719 -0.9613 16 7 2.3090 -8.6040 -2.0670 17 6 1.7614 -8.9633 -3.2448 18 8 0.5642 -8.8415 -3.4211 19 6 2.6115 -9.5027 -4.3173 20 6 2.0709 -9.7491 -5.4969 21 6 2.8606 -10.3030 -6.6492 22 8 4.2605 -10.1758 -6.3926 23 6 4.6449 -10.6816 -5.1085 24 6 4.0655 -9.7604 -4.0312 25 6 1.9635 -8.2255 1.6033 26 6 3.2091 -8.7524 0.8863 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1243 -3.7314 -0.8895 30 1 3.7968 -6.1848 0.1110 31 1 0.8245 -9.0047 -0.6406 32 1 0.8179 -7.3485 -1.2929 33 1 3.2717 -8.6315 -1.9513 34 1 1.0208 -9.5410 -5.6401 35 1 2.6087 -9.7574 -7.5586 36 1 2.6110 -11.3561 -6.7786 37 1 5.7320 -10.6972 -5.0312 38 1 4.2509 -11.6897 -4.9789 39 1 4.6087 -8.8154 -4.0313 40 1 4.1648 -10.2358 -3.0553 41 1 2.1148 -7.5497 2.4449 42 1 1.1093 -8.8974 1.6874 43 1 3.1738 -9.7706 0.4989 44 1 4.1804 -8.4234 1.2559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722065980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:38 Heat of formation + Delta-G solvation = -105.421348 kcal Electronic energy + Delta-G solvation = -26593.053063 eV Core-core repulsion = 22636.606073 eV Total energy + Delta-G solvation = -3956.446989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53289 -40.84949 -39.69033 -38.50377 -35.49882 -34.70000 -34.60615 -34.00924 -32.04973 -30.59559 -28.77480 -27.68509 -26.63367 -24.66281 -23.71745 -22.76500 -22.24329 -20.97680 -19.87350 -19.61178 -18.67993 -17.89680 -17.69355 -17.27130 -16.89752 -16.78637 -16.65909 -16.38567 -16.22003 -15.89401 -15.79922 -15.34013 -14.91015 -14.71273 -14.61765 -14.49795 -14.06708 -13.75056 -13.54828 -13.46854 -13.40177 -13.18878 -12.87994 -12.64701 -12.52898 -12.44915 -12.02472 -11.87990 -11.76749 -11.55440 -11.26234 -11.14567 -10.85480 -10.63166 -10.32863 -10.29559 -10.07810 -10.01380 -8.69244 -8.36243 -6.14929 0.22786 1.23177 1.42521 1.43896 1.53359 1.58766 1.95118 2.11412 2.13452 2.26073 2.77577 2.95118 2.97785 3.27983 3.46755 3.54027 3.68048 3.76615 3.85518 3.86067 3.98792 4.26369 4.27296 4.32121 4.42776 4.43484 4.47726 4.52201 4.57507 4.69975 4.72469 4.80586 4.86135 4.97251 4.97932 5.17222 5.20782 5.29251 5.39308 5.43751 5.50597 6.11234 6.17559 6.44209 6.48628 7.04611 7.11634 7.24535 8.72797 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.002402 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.958829 B =11654.384250 C =12810.828707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.555 6.555 13 N -0.681 5.681 14 C 0.062 3.938 15 C 0.151 3.849 16 N -0.701 5.701 17 C 0.540 3.460 18 O -0.594 6.594 19 C -0.178 4.178 20 C -0.114 4.114 21 C 0.088 3.912 22 O -0.396 6.396 23 C 0.056 3.944 24 C -0.115 4.115 25 C -0.175 4.175 26 C -0.119 4.119 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.420 0.580 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.417 0.583 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.130 0.870 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.160 -26.906 -4.973 32.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.432 6.432 13 N -0.335 5.335 14 C -0.026 4.026 15 C 0.026 3.974 16 N -0.353 5.353 17 C 0.330 3.670 18 O -0.476 6.476 19 C -0.181 4.181 20 C -0.134 4.134 21 C 0.012 3.988 22 O -0.315 6.315 23 C -0.020 4.020 24 C -0.152 4.152 25 C -0.214 4.214 26 C -0.156 4.156 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.259 0.741 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.255 0.745 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.148 0.852 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.341 -26.977 -5.234 30.997 hybrid contribution 1.300 1.717 0.315 2.177 sum 15.641 -25.260 -4.919 30.115 Atomic orbital electron populations 1.70186 1.08057 1.28696 1.47946 1.26169 0.95973 1.03448 0.93718 0.84988 0.77787 0.75558 0.79565 1.18690 1.20459 1.18398 1.23168 0.95338 0.91921 1.58977 0.89806 1.85654 1.10633 0.99383 1.97051 1.23359 1.03509 0.94320 1.06722 1.20118 0.86288 0.86532 0.74967 1.90704 1.17780 1.85791 1.48916 1.45031 1.09932 1.03320 1.75234 1.20723 1.04690 0.83068 0.94127 1.20888 0.92200 0.98992 0.85345 1.45691 1.11303 1.66589 1.11686 1.19065 0.87468 0.77250 0.83258 1.90799 1.18030 1.56842 1.81934 1.20971 0.97507 1.05735 0.93921 1.23933 1.01410 0.93319 0.94774 1.21727 0.79773 1.01803 0.95516 1.88130 1.23227 1.83918 1.36226 1.22883 1.01899 0.96058 0.81180 1.21168 0.89504 1.02593 1.01953 1.23478 1.00942 1.03304 0.93685 1.23544 0.95804 0.97537 0.98731 0.92002 0.86922 0.87553 0.74118 0.90463 0.93642 0.74536 0.86528 0.85752 0.88669 0.85826 0.91303 0.89025 0.87094 0.88437 0.87602 0.85225 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.98 13.22 21.65 0.29 -56.69 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.55 -31.45 9.50 67.96 0.65 -30.80 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.70 20.58 -56.49 -1.16 -9.87 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 19.54 7.67 87.66 0.67 20.21 16 12 O -0.55 -26.05 14.13 -3.04 -0.04 -26.09 16 13 N -0.68 -15.76 5.48 -422.91 -2.32 -18.08 16 14 C 0.06 1.24 1.91 3.60 0.01 1.25 16 15 C 0.15 3.96 5.59 86.38 0.48 4.44 16 16 N -0.70 -14.57 5.42 -466.71 -2.53 -17.10 16 17 C 0.54 14.34 7.71 86.57 0.67 15.01 16 18 O -0.59 -22.22 16.05 -4.07 -0.07 -22.29 16 19 C -0.18 -3.38 5.86 -18.58 -0.11 -3.49 16 20 C -0.11 -2.13 9.57 24.59 0.24 -1.89 16 21 C 0.09 1.10 7.04 71.10 0.50 1.60 16 22 O -0.40 -5.80 10.83 -148.98 -1.61 -7.42 16 23 C 0.06 0.49 6.88 72.02 0.50 0.98 16 24 C -0.12 -1.17 5.13 29.80 0.15 -1.01 16 25 C -0.18 -3.05 10.11 30.62 0.31 -2.74 16 26 C -0.12 -1.10 10.02 30.62 0.31 -0.80 16 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 29 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.42 6.32 8.83 -92.71 -0.82 5.50 16 31 H 0.08 1.96 7.94 -2.38 -0.02 1.94 16 32 H 0.05 1.75 6.24 -2.39 -0.01 1.74 16 33 H 0.42 5.32 6.93 -92.71 -0.64 4.68 16 34 H 0.12 2.61 7.30 -2.91 -0.02 2.59 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.45 8.09 -2.38 -0.02 0.43 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.11 0.54 7.65 -2.39 -0.02 0.52 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.11 1.79 8.08 -2.39 -0.02 1.77 16 43 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.13 0.62 8.14 -2.38 -0.02 0.60 16 Total: -1.00 -90.51 385.68 -0.57 -91.08 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.42 Total: 21.24 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.27 Total: -0.71 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -4.56 Total: -91.87 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -1.72 Total: -55.80 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.87 kcal Total: -90.51 -0.57 -91.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722065980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.344 kcal (2) G-P(sol) polarization free energy of solvation -90.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds