Wall clock time and date at job start Wed Apr 1 2020 00:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37944 * 120.06875 * 2 1 4 4 C 1.38369 * 120.18317 * 180.27442 * 3 2 1 5 5 C 1.38311 * 120.31511 * 359.76357 * 4 3 2 6 6 C 1.38106 * 120.13302 * 359.95355 * 5 4 3 7 7 Cl 1.73598 * 120.09426 * 180.02562 * 6 5 4 8 8 C 1.39576 * 120.06728 * 179.73825 * 2 1 3 9 9 C 1.47769 * 120.15650 * 359.97438 * 8 2 1 10 10 O 1.21562 * 119.99961 * 269.72680 * 9 8 2 11 11 N 1.34774 * 120.00291 * 89.72155 * 9 8 2 12 12 C 1.46498 * 119.99732 * 0.02562 * 11 9 8 13 13 C 1.46503 * 120.00158 * 179.97438 * 11 9 8 14 14 C 1.53004 * 109.46768 * 90.00314 * 13 11 9 15 15 H 1.08992 * 109.47389 * 305.00348 * 14 13 11 16 16 O 1.42910 * 109.46778 * 64.99958 * 14 13 11 17 17 C 1.53000 * 109.46987 * 184.99850 * 14 13 11 18 18 N 1.46499 * 109.46854 * 180.02562 * 17 14 13 19 19 C 1.46503 * 119.99876 * 270.00258 * 18 17 14 20 20 C 1.36936 * 120.00341 * 90.00145 * 18 17 14 21 21 H 1.08007 * 119.99914 * 342.24986 * 20 18 17 22 22 C 1.38815 * 120.00380 * 161.97234 * 20 18 17 23 23 N 1.31615 * 119.99684 * 345.03512 * 22 20 18 24 24 Si 1.86796 * 120.00009 * 165.03248 * 22 20 18 25 25 H 1.48494 * 109.47347 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47137 * 120.00389 * 24 22 20 27 27 H 1.48510 * 109.47062 * 240.00177 * 24 22 20 28 28 H 1.08995 * 109.47571 * 270.26379 * 1 2 3 29 29 H 1.08999 * 109.46795 * 30.26235 * 1 2 3 30 30 H 1.08999 * 109.46886 * 150.25408 * 1 2 3 31 31 H 1.08001 * 119.90494 * 0.02562 * 3 2 1 32 32 H 1.08006 * 119.84467 * 179.73867 * 4 3 2 33 33 H 1.08002 * 119.93492 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47064 * 269.99454 * 12 11 9 35 35 H 1.08998 * 109.47314 * 30.00351 * 12 11 9 36 36 H 1.09006 * 109.47194 * 149.99522 * 12 11 9 37 37 H 1.09000 * 109.47207 * 330.00791 * 13 11 9 38 38 H 1.09000 * 109.47330 * 210.00005 * 13 11 9 39 39 H 0.96694 * 113.99671 * 60.00244 * 16 14 13 40 40 H 1.08995 * 109.46697 * 60.00390 * 17 14 13 41 41 H 1.08995 * 109.47257 * 299.99965 * 17 14 13 42 42 H 1.09010 * 109.46952 * 264.95187 * 19 18 17 43 43 H 1.08997 * 109.47352 * 24.95570 * 19 18 17 44 44 H 1.09005 * 109.47063 * 144.95542 * 19 18 17 45 45 H 0.96998 * 120.00043 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1938 0.0000 4 6 3.5819 1.1966 -0.0057 5 6 4.2824 0.0040 -0.0066 6 6 3.6037 -1.1988 -0.0007 7 17 4.4839 -2.6950 -0.0011 8 6 2.2064 -1.2079 0.0055 9 6 1.4725 -2.4905 0.0119 10 8 1.1754 -3.0155 1.0673 11 7 1.1325 -3.0782 -1.1522 12 6 1.4909 -2.4458 -2.4241 13 6 0.4054 -4.3501 -1.1458 14 6 -1.1000 -4.0769 -1.1393 15 1 -1.3483 -3.4301 -0.2979 16 8 -1.4728 -3.4343 -2.3602 17 6 -1.8578 -5.3994 -1.0069 18 7 -3.2992 -5.1378 -1.0013 19 6 -3.9947 -4.8950 0.2651 20 6 -3.9966 -5.1202 -2.1797 21 1 -3.4708 -5.0109 -3.1167 22 6 -5.3788 -5.2486 -2.1703 23 7 -5.9925 -5.6771 -1.0876 24 14 -6.3676 -4.8134 -3.6941 25 1 -5.4480 -4.3595 -4.7680 26 1 -7.1171 -6.0092 -4.1561 27 1 -7.3240 -3.7246 -3.3693 28 1 -0.3634 0.0047 1.0276 29 1 -0.3633 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5099 31 1 1.6578 2.1289 0.0004 32 1 4.1175 2.1345 -0.0100 33 1 5.3624 0.0133 -0.0115 34 1 0.6879 -1.7783 -2.7370 35 1 2.4107 -1.8744 -2.2993 36 1 1.6408 -3.2142 -3.1826 37 1 0.6753 -4.9184 -0.2558 38 1 0.6669 -4.9226 -2.0358 39 1 -1.2805 -3.9540 -3.1526 40 1 -1.5734 -5.8894 -0.0758 41 1 -1.6096 -6.0462 -1.8484 42 1 -4.4268 -5.8280 0.6270 43 1 -3.2870 -4.5128 1.0008 44 1 -4.7877 -4.1635 0.1096 45 1 -6.9583 -5.7665 -1.0809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725719498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:23 Heat of formation + Delta-G solvation = -58.405312 kcal Electronic energy + Delta-G solvation = -28138.546783 eV Core-core repulsion = 24182.094856 eV Total energy + Delta-G solvation = -3956.451927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64431 -39.82044 -38.75228 -37.61602 -36.87116 -35.95089 -33.87106 -33.31172 -32.33760 -30.95945 -28.32239 -28.14251 -27.81745 -26.96760 -24.72067 -23.47173 -22.74362 -22.16441 -20.59998 -18.81666 -18.59881 -17.76821 -17.44196 -17.22213 -16.78090 -16.71372 -16.32836 -15.98044 -15.59690 -15.27761 -14.97205 -14.90464 -14.68137 -14.51749 -14.28944 -14.07905 -13.86247 -13.63788 -13.54038 -13.36059 -13.07348 -12.81494 -12.72854 -12.57153 -12.53514 -12.47532 -12.34240 -12.24447 -12.04279 -12.02267 -11.87929 -11.81420 -11.27951 -11.04939 -10.57567 -9.93203 -9.74739 -9.66001 -8.73211 -7.76745 -5.19429 -0.08269 0.11606 0.98095 1.40663 1.47584 1.50002 1.59925 1.92875 2.49014 2.55382 3.33049 3.37831 3.54468 3.61216 3.76781 3.88495 4.01210 4.15212 4.20135 4.22279 4.25290 4.37760 4.45922 4.53072 4.57723 4.58960 4.63900 4.72877 4.74779 4.77796 4.88663 4.93915 5.07406 5.09472 5.19816 5.26844 5.35119 5.37892 5.45425 5.61948 5.72966 5.73005 6.24622 6.34302 6.98494 7.03194 7.19281 7.89965 8.34546 9.28564 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.002872 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.834204 B = 9747.025421 C =10193.478139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.051 4.051 3 C -0.111 4.111 4 C -0.077 4.077 5 C -0.115 4.115 6 C -0.021 4.021 7 Cl -0.069 7.069 8 C -0.134 4.134 9 C 0.562 3.438 10 O -0.575 6.575 11 N -0.592 5.592 12 C 0.082 3.918 13 C 0.091 3.909 14 C 0.095 3.905 15 H 0.053 0.947 16 O -0.555 6.555 17 C 0.122 3.878 18 N -0.612 5.612 19 C 0.181 3.819 20 C -0.231 4.231 21 H 0.084 0.916 22 C -0.071 4.071 23 N -0.950 5.950 24 Si 0.968 3.032 25 H -0.261 1.261 26 H -0.296 1.296 27 H -0.300 1.300 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.162 0.838 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.376 0.624 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.004 0.996 43 H 0.015 0.985 44 H 0.017 0.983 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.297 15.012 -2.692 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.052 4.052 3 C -0.129 4.129 4 C -0.095 4.095 5 C -0.134 4.134 6 C -0.048 4.048 7 Cl -0.040 7.040 8 C -0.138 4.138 9 C 0.350 3.650 10 O -0.455 6.455 11 N -0.322 5.322 12 C -0.060 4.060 13 C -0.032 4.032 14 C 0.032 3.968 15 H 0.071 0.929 16 O -0.360 6.360 17 C -0.006 4.006 18 N -0.334 5.334 19 C 0.035 3.965 20 C -0.361 4.361 21 H 0.101 0.899 22 C -0.263 4.263 23 N -0.599 5.599 24 Si 0.798 3.202 25 H -0.185 1.185 26 H -0.224 1.224 27 H -0.228 1.228 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.181 0.819 32 H 0.193 0.807 33 H 0.179 0.821 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.224 0.776 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.022 0.978 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 24.875 15.012 -1.752 29.107 hybrid contribution -0.988 -0.882 -0.514 1.421 sum 23.887 14.130 -2.267 27.845 Atomic orbital electron populations 1.20883 0.90482 1.03678 1.02749 1.20037 0.96330 0.91624 0.97164 1.21465 0.95027 0.97504 0.98903 1.21699 0.93708 0.98796 0.95309 1.21350 1.01920 0.89651 1.00460 1.21060 0.90217 0.88756 1.04811 1.98389 1.75417 1.33390 1.96798 1.19635 0.92602 0.93662 1.07906 1.18524 0.78387 0.84480 0.83636 1.90783 1.56720 1.65635 1.32408 1.47748 1.54857 1.22985 1.06591 1.21946 1.00622 0.99358 0.84052 1.22258 0.91191 0.85100 1.04679 1.22671 0.91826 0.95389 0.86956 0.92925 1.86585 1.86829 1.47175 1.15416 1.21525 0.83596 0.94830 1.00605 1.44024 1.03540 1.82295 1.03549 1.20483 0.92998 0.97305 0.85686 1.19612 0.89560 1.40330 0.86643 0.89858 1.25724 0.98619 1.01929 1.00075 1.70292 1.07736 1.51933 1.29924 0.85160 0.78622 0.76652 0.79778 1.18465 1.22354 1.22767 0.91239 0.88144 0.93513 0.81948 0.80679 0.82083 0.92022 0.90998 0.88547 0.90445 0.86719 0.77594 0.93369 0.91464 0.97794 0.96669 0.96437 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.62 71.24 0.69 -2.09 16 2 C -0.05 -1.06 5.91 -19.61 -0.12 -1.17 16 3 C -0.11 -1.47 9.69 22.23 0.22 -1.25 16 4 C -0.08 -0.77 10.04 22.32 0.22 -0.54 16 5 C -0.12 -1.56 9.82 22.26 0.22 -1.34 16 6 C -0.02 -0.44 5.92 22.60 0.13 -0.30 16 7 Cl -0.07 -1.50 28.04 -2.72 -0.08 -1.58 16 8 C -0.13 -3.32 3.92 -20.07 -0.08 -3.40 16 9 C 0.56 17.24 4.63 86.76 0.40 17.64 16 10 O -0.58 -22.79 16.68 -3.91 -0.07 -22.85 16 11 N -0.59 -15.45 2.83 -850.27 -2.41 -17.86 16 12 C 0.08 1.56 9.90 127.77 1.27 2.82 16 13 C 0.09 2.47 5.11 86.38 0.44 2.91 16 14 C 0.09 3.28 3.48 30.60 0.11 3.39 16 15 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 16 O -0.55 -18.94 12.02 -148.98 -1.79 -20.73 16 17 C 0.12 4.81 5.36 86.38 0.46 5.28 16 18 N -0.61 -31.31 2.88 -726.92 -2.09 -33.40 16 19 C 0.18 9.68 8.97 127.77 1.15 10.82 16 20 C -0.23 -12.58 9.08 84.03 0.76 -11.82 16 21 H 0.08 4.22 7.69 -2.91 -0.02 4.20 16 22 C -0.07 -4.03 5.08 84.86 0.43 -3.60 16 23 N -0.95 -58.30 10.53 21.65 0.23 -58.07 16 24 Si 0.97 46.06 29.58 68.60 2.03 48.09 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.10 1.71 8.09 -2.39 -0.02 1.69 16 30 H 0.05 1.35 7.08 -2.39 -0.02 1.33 16 31 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.25 6.55 -2.39 -0.02 1.23 16 36 H 0.10 1.36 7.89 -2.38 -0.02 1.34 16 37 H 0.08 2.34 7.42 -2.39 -0.02 2.32 16 38 H 0.11 2.30 7.89 -2.39 -0.02 2.28 16 39 H 0.38 10.12 9.04 -74.06 -0.67 9.45 16 40 H 0.05 1.87 8.07 -2.39 -0.02 1.85 16 41 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 42 H 0.00 0.22 7.47 -2.38 -0.02 0.20 16 43 H 0.01 0.72 8.03 -2.39 -0.02 0.70 16 44 H 0.02 1.00 7.04 -2.38 -0.02 0.98 16 45 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -77.71 387.64 2.45 -75.26 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.33 Total: 13.80 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 6.30 Total: 17.35 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.27 Total: -109.33 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.86 Total: -43.58 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -77.71 2.45 -75.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725719498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.853 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds