Wall clock time and date at job start Tue Mar 31 2020 23:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86808 * 120.00179 * 2 1 4 4 H 1.48500 * 109.46975 * 270.00041 * 3 2 1 5 5 H 1.48499 * 109.46691 * 29.99957 * 3 2 1 6 6 H 1.48494 * 109.47078 * 150.00184 * 3 2 1 7 7 C 1.38957 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99559 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99926 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99712 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00432 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47278 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00008 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47237 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.47213 * 305.00138 * 15 14 13 17 17 O 1.42902 * 109.46549 * 65.00143 * 15 14 13 18 18 C 1.52993 * 109.47286 * 184.99972 * 15 14 13 19 19 N 1.46495 * 109.47530 * 180.02562 * 18 15 14 20 20 C 1.34775 * 120.00324 * 180.02562 * 19 18 15 21 21 O 1.21532 * 120.00269 * 359.97438 * 20 19 18 22 22 C 1.47996 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.32808 * 119.75187 * 359.97438 * 22 20 19 24 24 C 1.31432 * 121.66838 * 180.02562 * 23 22 20 25 25 C 1.38685 * 120.98032 * 359.97438 * 24 23 22 26 26 C 1.38439 * 119.39355 * 0.27475 * 25 24 23 27 27 C 1.38969 * 118.46638 * 359.50238 * 26 25 24 28 28 F 1.35109 * 120.50270 * 180.24260 * 27 26 25 29 29 H 0.96998 * 120.00172 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00488 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47053 * 59.99635 * 12 10 9 32 32 H 1.09003 * 109.46870 * 299.99957 * 12 10 9 33 33 H 1.00893 * 111.00264 * 56.04544 * 13 12 10 34 34 H 1.09008 * 109.46923 * 59.99540 * 14 13 12 35 35 H 1.08992 * 109.46934 * 299.99831 * 14 13 12 36 36 H 0.96697 * 114.00374 * 60.00467 * 17 15 14 37 37 H 1.09000 * 109.47248 * 59.99997 * 18 15 14 38 38 H 1.09007 * 109.46748 * 300.00403 * 18 15 14 39 39 H 0.97005 * 119.99275 * 359.97438 * 19 18 15 40 40 H 1.08003 * 119.51032 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.30062 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.77043 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0004 14 6 1.4980 -7.2709 -0.0003 15 6 2.5229 -8.4069 -0.0002 16 1 3.2039 -8.2819 -0.8419 17 8 3.2646 -8.3789 1.2210 18 6 1.7976 -9.7481 -0.1258 19 7 2.7789 -10.8359 -0.1251 20 6 2.3670 -12.1151 -0.2271 21 8 1.1815 -12.3663 -0.3193 22 6 3.3584 -13.2139 -0.2270 23 7 4.6527 -12.9338 -0.1265 24 6 5.5652 -13.8798 -0.1230 25 6 5.2084 -15.2161 -0.2243 26 6 3.8710 -15.5558 -0.3363 27 6 2.9263 -14.5366 -0.3326 28 9 1.6095 -14.8218 -0.4347 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3906 0.0002 31 1 0.6174 -4.9205 -0.8913 32 1 0.6167 -4.9209 0.8886 33 1 2.8325 -5.9125 0.7814 34 1 0.8734 -7.3455 -0.8906 35 1 0.8728 -7.3450 0.8894 36 1 2.7212 -8.4849 2.0138 37 1 1.2318 -9.7694 -1.0572 38 1 1.1165 -9.8731 0.7160 39 1 3.7251 -10.6353 -0.0519 40 1 6.6083 -13.6124 -0.0400 41 1 5.9674 -15.9845 -0.2207 42 1 3.5686 -16.5891 -0.4206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732661796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:03 Heat of formation + Delta-G solvation = -125.142681 kcal Electronic energy + Delta-G solvation = -27572.235217 eV Core-core repulsion = 23081.012622 eV Total energy + Delta-G solvation = -4491.222596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.41492 -40.97571 -39.56718 -38.49745 -37.85142 -34.99087 -34.55163 -33.77285 -33.25200 -31.74051 -31.22660 -30.27828 -27.40569 -25.63324 -24.66586 -24.01121 -23.10890 -21.91399 -21.14361 -19.27540 -18.76618 -18.14310 -17.88685 -17.76036 -16.97429 -16.69331 -16.38275 -16.10809 -15.79653 -15.53305 -15.36104 -14.91228 -14.62063 -14.50337 -14.43966 -14.01421 -13.88764 -13.75554 -13.74342 -13.41263 -13.02818 -12.96522 -12.86013 -12.39349 -11.82258 -11.56200 -11.50598 -11.15238 -11.01964 -10.83049 -10.63440 -10.41834 -10.38169 -10.20892 -10.08971 -9.67727 -9.49817 -9.36859 -8.45966 -8.08266 -7.94980 -6.40648 -3.81405 -0.10093 0.36944 2.23528 2.56295 3.16386 3.19105 3.27586 3.33567 3.39173 3.55077 3.91246 3.96002 3.99926 4.12943 4.17537 4.22809 4.26102 4.65302 4.75599 4.80398 4.92605 4.98307 5.10977 5.13145 5.23236 5.24518 5.30736 5.39625 5.58654 5.75679 5.85801 5.91036 5.96676 6.02927 6.26534 6.90072 7.15331 7.20488 7.41078 7.56414 7.67517 7.79084 8.07490 8.62505 9.19088 9.55371 10.06996 10.77112 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.001493 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.378137 B =18752.271683 C =19396.236095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.031 3.969 15 C 0.098 3.902 16 H 0.118 0.882 17 O -0.553 6.553 18 C 0.087 3.913 19 N -0.699 5.699 20 C 0.567 3.433 21 O -0.523 6.523 22 C 0.046 3.954 23 N -0.429 5.429 24 C 0.089 3.911 25 C -0.119 4.119 26 C -0.119 4.119 27 C 0.110 3.890 28 F -0.105 7.105 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.356 0.644 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.373 0.627 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.417 0.583 40 H 0.174 0.826 41 H 0.153 0.847 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 -32.377 0.911 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.297 5.297 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.136 0.864 17 O -0.357 6.357 18 C -0.038 4.038 19 N -0.351 5.351 20 C 0.350 3.650 21 O -0.399 6.399 22 C -0.093 4.093 23 N -0.140 5.140 24 C -0.071 4.071 25 C -0.139 4.139 26 C -0.146 4.146 27 C 0.087 3.913 28 F -0.083 7.083 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.177 0.823 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.220 0.780 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.255 0.745 40 H 0.191 0.809 41 H 0.170 0.830 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.476 -31.364 -0.175 32.026 hybrid contribution -1.150 -0.168 1.143 1.630 sum 5.326 -31.532 0.968 31.993 Atomic orbital electron populations 1.69608 1.05945 1.28148 1.50641 1.25262 0.95631 0.99719 0.97319 0.85850 0.79215 0.80773 0.78401 1.20392 1.20955 1.19422 1.19716 0.93403 0.82242 1.47578 0.87894 1.41857 1.09187 1.04593 1.64422 1.19794 0.88399 0.84705 0.84533 1.90534 1.13728 1.87035 1.55265 1.21685 0.94332 0.91021 1.01199 1.59999 1.18565 0.99245 1.51932 1.22537 0.95534 0.90320 1.01564 1.22242 0.94309 0.90756 0.88853 0.86395 1.86665 1.37946 1.95732 1.15398 1.22149 0.91735 0.86243 1.03645 1.45644 1.12030 1.04660 1.72777 1.17658 0.87028 0.82568 0.77704 1.90873 1.16011 1.83626 1.49357 1.21372 0.91967 0.91879 1.04060 1.67659 0.99727 1.37683 1.08931 1.22977 0.99629 0.88441 0.96083 1.22367 0.96043 0.98507 0.96935 1.21765 0.92721 1.00098 0.99967 1.18681 0.79643 0.93337 0.99596 1.91643 1.30587 1.93806 1.92224 0.91885 0.77470 0.89580 0.93895 0.82312 0.89855 0.94897 0.77965 0.89885 0.90757 0.74540 0.80926 0.82955 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 10 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 11 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 12 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 13 N -0.66 -10.56 6.13 -115.06 -0.70 -11.26 16 14 C 0.03 0.35 5.36 -3.82 -0.02 0.33 16 15 C 0.10 0.96 3.29 -26.74 -0.09 0.87 16 16 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 17 O -0.55 -5.64 12.60 -35.23 -0.44 -6.09 16 18 C 0.09 0.79 5.34 -4.05 -0.02 0.77 16 19 N -0.70 -6.84 5.44 -61.21 -0.33 -7.17 16 20 C 0.57 6.60 7.81 -12.26 -0.10 6.51 16 21 O -0.52 -7.66 15.32 5.34 0.08 -7.58 16 22 C 0.05 0.45 6.75 -82.96 -0.56 -0.11 16 23 N -0.43 -3.48 9.54 -9.76 -0.09 -3.57 16 24 C 0.09 0.43 11.18 -17.56 -0.20 0.23 16 25 C -0.12 -0.39 10.11 -39.34 -0.40 -0.78 16 26 C -0.12 -0.59 10.16 -39.24 -0.40 -0.99 16 27 C 0.11 0.97 7.32 -38.82 -0.28 0.69 16 28 F -0.10 -1.15 15.55 2.25 0.04 -1.12 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.36 6.05 7.99 -39.30 -0.31 5.74 16 34 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.37 2.68 9.05 45.56 0.41 3.10 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.42 3.84 7.67 -40.82 -0.31 3.53 16 40 H 0.17 0.31 8.06 -52.48 -0.42 -0.11 16 41 H 0.15 -0.02 8.06 -52.49 -0.42 -0.45 16 42 H 0.16 0.37 8.06 -52.48 -0.42 -0.05 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -36.01 375.28 -6.77 -42.77 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -4.28 Total: 15.84 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -2.42 Total: 10.69 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.46 Total: -60.38 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.27 Total: -29.61 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.01 -6.77 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732661796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.368 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds