Wall clock time and date at job start Tue Mar 31 2020 23:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86808 * 120.00179 * 2 1 4 4 H 1.48500 * 109.46975 * 270.00041 * 3 2 1 5 5 H 1.48499 * 109.46691 * 29.99957 * 3 2 1 6 6 H 1.48494 * 109.47078 * 150.00184 * 3 2 1 7 7 C 1.38957 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99559 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99926 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99712 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00432 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47278 * 180.02562 * 12 10 9 14 14 C 1.46906 * 111.00008 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47237 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.47213 * 305.00138 * 15 14 13 17 17 O 1.42902 * 109.46549 * 65.00143 * 15 14 13 18 18 C 1.52993 * 109.47286 * 184.99972 * 15 14 13 19 19 N 1.46495 * 109.47530 * 180.02562 * 18 15 14 20 20 C 1.34775 * 120.00324 * 180.02562 * 19 18 15 21 21 O 1.21532 * 120.00269 * 359.97438 * 20 19 18 22 22 C 1.47996 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.32808 * 119.75187 * 359.97438 * 22 20 19 24 24 C 1.31432 * 121.66838 * 180.02562 * 23 22 20 25 25 C 1.38685 * 120.98032 * 359.97438 * 24 23 22 26 26 C 1.38439 * 119.39355 * 0.27475 * 25 24 23 27 27 C 1.38969 * 118.46638 * 359.50238 * 26 25 24 28 28 F 1.35109 * 120.50270 * 180.24260 * 27 26 25 29 29 H 0.96998 * 120.00172 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00488 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47053 * 59.99635 * 12 10 9 32 32 H 1.09003 * 109.46870 * 299.99957 * 12 10 9 33 33 H 1.00893 * 111.00264 * 56.04544 * 13 12 10 34 34 H 1.09008 * 109.46923 * 59.99540 * 14 13 12 35 35 H 1.08992 * 109.46934 * 299.99831 * 14 13 12 36 36 H 0.96697 * 114.00374 * 60.00467 * 17 15 14 37 37 H 1.09000 * 109.47248 * 59.99997 * 18 15 14 38 38 H 1.09007 * 109.46748 * 300.00403 * 18 15 14 39 39 H 0.97005 * 119.99275 * 359.97438 * 19 18 15 40 40 H 1.08003 * 119.51032 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.30062 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.77043 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1983 -5.9795 -0.0004 14 6 1.4980 -7.2709 -0.0003 15 6 2.5229 -8.4069 -0.0002 16 1 3.2039 -8.2819 -0.8419 17 8 3.2646 -8.3789 1.2210 18 6 1.7976 -9.7481 -0.1258 19 7 2.7789 -10.8359 -0.1251 20 6 2.3670 -12.1151 -0.2271 21 8 1.1815 -12.3663 -0.3193 22 6 3.3584 -13.2139 -0.2270 23 7 4.6527 -12.9338 -0.1265 24 6 5.5652 -13.8798 -0.1230 25 6 5.2084 -15.2161 -0.2243 26 6 3.8710 -15.5558 -0.3363 27 6 2.9263 -14.5366 -0.3326 28 9 1.6095 -14.8218 -0.4347 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3906 0.0002 31 1 0.6174 -4.9205 -0.8913 32 1 0.6167 -4.9209 0.8886 33 1 2.8325 -5.9125 0.7814 34 1 0.8734 -7.3455 -0.8906 35 1 0.8728 -7.3450 0.8894 36 1 2.7212 -8.4849 2.0138 37 1 1.2318 -9.7694 -1.0572 38 1 1.1165 -9.8731 0.7160 39 1 3.7251 -10.6353 -0.0519 40 1 6.6083 -13.6124 -0.0400 41 1 5.9674 -15.9845 -0.2207 42 1 3.5686 -16.5891 -0.4206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732661796.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:02 Heat of formation + Delta-G solvation = -157.861636 kcal Electronic energy + Delta-G solvation = -27573.654018 eV Core-core repulsion = 23081.012622 eV Total energy + Delta-G solvation = -4492.641396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.08944 -41.57730 -40.34370 -40.10238 -38.96343 -36.33406 -35.70486 -35.37448 -33.71020 -33.26898 -32.28337 -31.23152 -28.69844 -26.84944 -25.77855 -24.70779 -24.11599 -22.76774 -21.90270 -21.09398 -19.92281 -19.44169 -18.73113 -18.38492 -18.07413 -17.51422 -17.25219 -17.11921 -16.77587 -16.70766 -16.37328 -16.17173 -15.93824 -15.76280 -15.36016 -15.08164 -14.94021 -14.68328 -14.49459 -14.31469 -14.17812 -14.04771 -13.56462 -13.50094 -13.43239 -13.17093 -12.94482 -12.70113 -12.41863 -12.11821 -12.00187 -11.61142 -11.50888 -11.18761 -11.04450 -10.73227 -10.36464 -10.33687 -10.04924 -10.01740 -9.33824 -8.46745 -5.95619 -0.62510 -0.04729 1.38448 1.42183 1.55049 1.55223 1.83756 2.05156 2.29594 2.61431 2.80634 2.92408 3.04416 3.20541 3.42764 3.47521 3.59494 3.63472 3.85160 3.86779 3.96835 4.11060 4.31170 4.34804 4.42261 4.50073 4.53103 4.56683 4.65896 4.74489 4.79440 4.91159 5.06283 5.22671 5.40927 5.47349 5.86418 6.08547 6.24766 6.39474 6.59446 6.60143 6.76120 6.98882 7.12567 7.56030 8.11634 8.70584 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.001493 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.378137 B =18752.271683 C =19396.236095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.033 3.967 15 C 0.113 3.887 16 H 0.106 0.894 17 O -0.565 6.565 18 C 0.093 3.907 19 N -0.692 5.692 20 C 0.560 3.440 21 O -0.565 6.565 22 C 0.017 3.983 23 N -0.450 5.450 24 C 0.087 3.913 25 C -0.094 4.094 26 C -0.114 4.114 27 C 0.083 3.917 28 F -0.127 7.127 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.348 0.652 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.387 0.613 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.420 0.580 40 H 0.206 0.794 41 H 0.199 0.801 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 -33.877 1.117 34.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.314 5.314 14 C -0.097 4.097 15 C 0.054 3.946 16 H 0.124 0.876 17 O -0.372 6.372 18 C -0.031 4.031 19 N -0.343 5.343 20 C 0.346 3.654 21 O -0.444 6.444 22 C -0.120 4.120 23 N -0.161 5.161 24 C -0.074 4.074 25 C -0.113 4.113 26 C -0.140 4.140 27 C 0.060 3.940 28 F -0.105 7.105 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.258 0.742 40 H 0.223 0.777 41 H 0.216 0.784 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.513 -32.869 0.035 33.716 hybrid contribution -1.347 0.186 1.095 1.746 sum 6.166 -32.683 1.131 33.278 Atomic orbital electron populations 1.69665 1.06827 1.29316 1.50255 1.26041 0.96548 1.02403 0.96200 0.84919 0.77878 0.76832 0.78643 1.19670 1.19473 1.19783 1.19684 0.92739 0.84100 1.50063 0.90350 1.41926 1.09332 1.04699 1.65042 1.20918 0.88275 0.86246 0.82227 1.90499 1.15933 1.87975 1.56624 1.21547 0.93963 0.88015 1.03230 1.59976 1.18932 1.00566 1.51886 1.22622 0.95808 0.88219 1.03036 1.21995 0.93613 0.90522 0.88517 0.87605 1.86637 1.38774 1.95725 1.16097 1.22082 0.91549 0.85684 1.03821 1.45621 1.12233 1.04443 1.71989 1.18076 0.87057 0.83389 0.76907 1.90830 1.17702 1.84295 1.51534 1.21114 0.92450 0.91584 1.06877 1.67632 0.99337 1.39222 1.09910 1.23698 1.00416 0.88864 0.94418 1.22886 0.96085 0.98882 0.93460 1.22162 0.92707 1.00440 0.98685 1.19101 0.79454 0.94212 1.01252 1.91576 1.32344 1.93923 1.92704 0.91282 0.76938 0.87649 0.91406 0.83248 0.88785 0.92840 0.76396 0.89982 0.90263 0.74192 0.77719 0.78373 0.79951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.84 13.05 21.66 0.28 -49.55 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 43.22 29.55 68.60 2.03 45.24 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.34 -19.33 9.68 84.04 0.81 -18.51 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -29.66 5.29 -306.98 -1.62 -31.28 16 10 C 0.44 20.96 7.82 87.66 0.69 21.65 16 11 O -0.62 -35.23 15.78 -3.08 -0.05 -35.27 16 12 C 0.06 2.19 6.17 85.56 0.53 2.72 16 13 N -0.68 -21.03 6.13 -517.92 -3.17 -24.20 16 14 C 0.03 0.68 5.36 86.30 0.46 1.14 16 15 C 0.11 2.14 3.29 30.59 0.10 2.25 16 16 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 17 O -0.57 -11.16 12.60 -148.98 -1.88 -13.04 16 18 C 0.09 1.68 5.34 86.38 0.46 2.14 16 19 N -0.69 -13.87 5.44 -465.84 -2.53 -16.41 16 20 C 0.56 13.74 7.81 86.83 0.68 14.42 16 21 O -0.56 -17.57 15.32 -3.82 -0.06 -17.63 16 22 C 0.02 0.34 6.75 41.90 0.28 0.62 16 23 N -0.45 -6.94 9.54 -184.79 -1.76 -8.70 16 24 C 0.09 0.59 11.18 84.86 0.95 1.54 16 25 C -0.09 -0.25 10.11 22.42 0.23 -0.02 16 26 C -0.11 -0.89 10.16 22.49 0.23 -0.66 16 27 C 0.08 1.48 7.32 22.76 0.17 1.64 16 28 F -0.13 -2.99 15.55 44.97 0.70 -2.29 16 29 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 31 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.35 11.72 7.99 -89.70 -0.72 11.00 16 34 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.39 5.15 9.05 -74.06 -0.67 4.48 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.37 8.14 -2.38 -0.02 1.36 16 39 H 0.42 7.87 7.67 -92.70 -0.71 7.15 16 40 H 0.21 -0.07 8.06 -2.91 -0.02 -0.09 16 41 H 0.20 -1.26 8.06 -2.91 -0.02 -1.28 16 42 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -81.74 375.28 -3.72 -85.46 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -1.71 Total: 38.92 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: 6.05 Total: 28.74 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -8.81 Total: -130.14 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -1.98 Total: -65.94 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.70 Total: -2.29 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -81.74 -3.72 -85.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732661796.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.399 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds