Wall clock time and date at job start Tue Mar 31 2020 23:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48499 * 109.47234 * 270.00238 * 3 2 1 5 5 H 1.48502 * 109.47343 * 30.00267 * 3 2 1 6 6 H 1.48498 * 109.47042 * 150.00065 * 3 2 1 7 7 C 1.38946 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00398 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00044 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99898 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00307 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47058 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00101 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47510 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46984 * 59.99464 * 15 14 13 17 17 O 1.42899 * 109.46842 * 300.00167 * 15 14 13 18 18 C 1.52993 * 109.47505 * 179.97438 * 15 14 13 19 19 N 1.46495 * 109.47530 * 185.00076 * 18 15 14 20 20 C 1.34775 * 120.00324 * 180.02562 * 19 18 15 21 21 O 1.21532 * 120.00269 * 359.97438 * 20 19 18 22 22 C 1.47996 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.32808 * 119.75187 * 359.97438 * 22 20 19 24 24 C 1.31432 * 121.66838 * 180.02562 * 23 22 20 25 25 C 1.38685 * 120.98032 * 359.97438 * 24 23 22 26 26 C 1.38439 * 119.39355 * 0.27475 * 25 24 23 27 27 C 1.38969 * 118.46638 * 359.50238 * 26 25 24 28 28 F 1.35109 * 120.50270 * 180.24260 * 27 26 25 29 29 H 0.96996 * 120.00004 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00159 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.47329 * 59.99468 * 12 10 9 32 32 H 1.09005 * 109.47092 * 299.99144 * 12 10 9 33 33 H 1.00903 * 110.99807 * 303.94749 * 13 12 10 34 34 H 1.08997 * 109.47581 * 59.99231 * 14 13 12 35 35 H 1.09005 * 109.46848 * 299.99279 * 14 13 12 36 36 H 0.96703 * 113.99853 * 299.99435 * 17 15 14 37 37 H 1.09000 * 109.47248 * 64.99703 * 18 15 14 38 38 H 1.09007 * 109.46748 * 305.00110 * 18 15 14 39 39 H 0.97005 * 119.99275 * 359.97438 * 19 18 15 40 40 H 1.08003 * 119.51032 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.30062 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.77043 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4473 -3.4210 -0.0021 12 6 5.5608 -2.3705 -0.0021 13 7 6.0504 -3.7555 -0.0027 14 6 7.5188 -3.7947 -0.0021 15 6 7.9903 -5.2503 -0.0022 16 1 7.6136 -5.7542 -0.8924 17 8 7.4956 -5.9112 1.1643 18 6 9.5196 -5.2912 -0.0022 19 7 9.9711 -6.6796 -0.1226 20 6 11.2892 -6.9603 -0.1436 21 8 12.1033 -6.0615 -0.0631 22 6 11.7452 -8.3630 -0.2647 23 7 10.8514 -9.3414 -0.3518 24 6 11.2144 -10.6000 -0.4600 25 6 12.5543 -10.9566 -0.4881 26 6 13.5219 -9.9709 -0.3948 27 6 13.1112 -8.6478 -0.2861 28 9 14.0206 -7.6525 -0.1975 29 1 -0.4850 0.8400 0.0004 30 1 3.8648 -0.3633 -0.0014 31 1 5.9241 -1.8574 0.8882 32 1 5.9241 -1.8560 -0.8918 33 1 5.6750 -4.2721 0.7785 34 1 7.8955 -3.2912 0.8882 35 1 7.8961 -3.2903 -0.8918 36 1 7.7913 -5.5155 1.9957 37 1 9.8945 -4.8667 0.9292 38 1 9.8985 -4.7116 -0.8441 39 1 9.3213 -7.3970 -0.1865 40 1 10.4579 -11.3678 -0.5282 41 1 12.8402 -11.9943 -0.5769 42 1 14.5717 -10.2240 -0.4103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732661797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:06 Heat of formation + Delta-G solvation = -117.677425 kcal Electronic energy + Delta-G solvation = -27626.621611 eV Core-core repulsion = 23135.722733 eV Total energy + Delta-G solvation = -4490.898878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.43652 -40.99889 -39.60011 -38.63902 -37.96658 -35.06677 -34.60810 -33.83640 -33.27542 -31.76613 -31.65672 -30.36531 -27.55718 -25.69692 -24.65123 -23.99505 -23.05153 -21.96211 -21.17846 -19.39851 -18.81859 -18.36938 -18.15688 -17.78426 -17.00147 -16.72562 -16.40917 -16.12575 -15.81597 -15.61639 -15.42434 -15.01670 -14.75346 -14.65935 -14.50107 -14.03767 -13.91674 -13.77976 -13.59107 -13.36992 -13.09189 -13.04729 -12.86888 -12.55331 -12.09281 -11.89690 -11.72589 -11.23751 -11.13541 -10.85968 -10.65273 -10.59462 -10.45784 -10.12492 -9.96562 -9.70066 -9.56677 -9.40426 -8.59101 -8.20310 -8.15425 -6.30363 -3.81834 -0.12143 0.35104 2.20885 2.53109 3.02733 3.07398 3.14100 3.15473 3.36847 3.52810 3.74292 3.88705 3.97859 4.10422 4.11603 4.15977 4.20064 4.58513 4.64478 4.75036 4.84112 4.92414 4.98169 5.09784 5.16674 5.21601 5.23518 5.33995 5.49843 5.59405 5.78355 5.83046 5.84238 5.93129 5.99659 6.87510 7.02012 7.17056 7.37291 7.57743 7.59776 7.75484 8.15292 8.60532 8.95776 9.43090 9.83447 10.82782 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.001554 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.297822 B =18014.994110 C =18715.680491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.449 3.551 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.663 5.663 14 C 0.031 3.969 15 C 0.099 3.901 16 H 0.118 0.882 17 O -0.551 6.551 18 C 0.087 3.913 19 N -0.699 5.699 20 C 0.567 3.433 21 O -0.523 6.523 22 C 0.046 3.954 23 N -0.429 5.429 24 C 0.090 3.910 25 C -0.118 4.118 26 C -0.119 4.119 27 C 0.110 3.890 28 F -0.105 7.105 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.358 0.642 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.373 0.627 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.417 0.583 40 H 0.174 0.826 41 H 0.153 0.847 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.890 -18.926 0.224 35.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.444 6.444 12 C -0.085 4.085 13 N -0.297 5.297 14 C -0.100 4.100 15 C 0.039 3.961 16 H 0.136 0.864 17 O -0.356 6.356 18 C -0.037 4.037 19 N -0.352 5.352 20 C 0.351 3.649 21 O -0.399 6.399 22 C -0.093 4.093 23 N -0.140 5.140 24 C -0.071 4.071 25 C -0.138 4.138 26 C -0.145 4.145 27 C 0.087 3.913 28 F -0.083 7.083 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.179 0.821 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.220 0.780 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.254 0.746 40 H 0.191 0.809 41 H 0.171 0.829 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 28.629 -18.991 -0.814 34.364 hybrid contribution 1.861 1.672 1.215 2.782 sum 30.490 -17.319 0.401 35.067 Atomic orbital electron populations 1.69622 1.05638 1.27480 1.49392 1.25036 0.95492 0.97960 0.97659 0.86665 0.79727 0.84039 0.78893 1.19606 1.20196 1.19561 1.19441 0.79248 0.96659 1.48061 0.86262 1.42201 1.07534 1.06135 1.67168 1.19692 0.88162 0.84589 0.84054 1.90578 1.69393 1.30903 1.53537 1.21722 0.95181 0.90340 1.01274 1.59965 1.04925 1.12616 1.52200 1.22536 0.90085 0.95779 1.01590 1.22225 0.89931 0.93550 0.90418 0.86445 1.86682 1.75192 1.58053 1.15639 1.22156 0.95446 0.82742 1.03398 1.45656 1.06748 1.09892 1.72856 1.17659 0.83151 0.86422 0.77674 1.90872 1.53477 1.46071 1.49462 1.21363 0.88904 0.94889 1.04165 1.67656 1.36823 1.00790 1.08745 1.22980 0.95420 0.92705 0.95998 1.22371 0.93427 1.01069 0.96950 1.21767 1.02446 0.90450 0.99884 1.18679 0.86791 0.86149 0.99632 1.91642 1.64941 1.59360 1.92330 0.91621 0.79705 0.93783 0.89456 0.82100 0.94898 0.89807 0.77969 0.90744 0.89930 0.74573 0.80900 0.82934 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.40 27.74 -169.99 -4.71 14.69 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 7 C -0.31 -8.69 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.88 7.39 -52.48 -0.39 3.50 16 9 N -0.59 -14.12 5.09 -10.96 -0.06 -14.17 16 10 C 0.45 10.24 7.82 -10.98 -0.09 10.15 16 11 O -0.56 -15.27 15.78 5.55 0.09 -15.18 16 12 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 13 N -0.66 -9.98 6.13 -115.06 -0.70 -10.69 16 14 C 0.03 0.32 5.39 -3.82 -0.02 0.30 16 15 C 0.10 0.91 3.27 -26.73 -0.09 0.82 16 16 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 17 O -0.55 -5.48 12.62 -35.23 -0.44 -5.92 16 18 C 0.09 0.75 5.31 -4.05 -0.02 0.73 16 19 N -0.70 -6.61 5.49 -61.21 -0.34 -6.94 16 20 C 0.57 6.44 7.81 -12.26 -0.10 6.35 16 21 O -0.52 -7.50 15.32 5.34 0.08 -7.41 16 22 C 0.05 0.44 6.75 -82.96 -0.56 -0.12 16 23 N -0.43 -3.40 9.54 -9.76 -0.09 -3.49 16 24 C 0.09 0.42 11.18 -17.56 -0.20 0.22 16 25 C -0.12 -0.37 10.11 -39.34 -0.40 -0.76 16 26 C -0.12 -0.57 10.16 -39.24 -0.40 -0.97 16 27 C 0.11 0.95 7.32 -38.82 -0.28 0.67 16 28 F -0.10 -1.13 15.55 2.25 0.04 -1.10 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.36 5.79 7.82 -39.29 -0.31 5.48 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.37 2.57 9.05 45.56 0.41 2.98 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 39 H 0.42 3.69 7.80 -40.82 -0.32 3.38 16 40 H 0.17 0.29 8.06 -52.48 -0.42 -0.14 16 41 H 0.15 -0.05 8.06 -52.49 -0.42 -0.47 16 42 H 0.16 0.35 8.06 -52.48 -0.42 -0.07 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -37.36 372.18 -6.42 -43.78 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -4.23 Total: 15.57 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -2.43 Total: 10.32 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.42 Total: -60.35 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.28 Total: -28.52 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.36 -6.42 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732661797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.901 kcal (2) G-P(sol) polarization free energy of solvation -37.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds