Wall clock time and date at job start Tue Mar 31 2020 23:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48499 * 109.47234 * 270.00238 * 3 2 1 5 5 H 1.48502 * 109.47343 * 30.00267 * 3 2 1 6 6 H 1.48498 * 109.47042 * 150.00065 * 3 2 1 7 7 C 1.38946 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00398 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00044 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99898 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00307 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99867 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47058 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00101 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47510 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.46984 * 59.99464 * 15 14 13 17 17 O 1.42899 * 109.46842 * 300.00167 * 15 14 13 18 18 C 1.52993 * 109.47505 * 179.97438 * 15 14 13 19 19 N 1.46495 * 109.47530 * 185.00076 * 18 15 14 20 20 C 1.34775 * 120.00324 * 180.02562 * 19 18 15 21 21 O 1.21532 * 120.00269 * 359.97438 * 20 19 18 22 22 C 1.47996 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.32808 * 119.75187 * 359.97438 * 22 20 19 24 24 C 1.31432 * 121.66838 * 180.02562 * 23 22 20 25 25 C 1.38685 * 120.98032 * 359.97438 * 24 23 22 26 26 C 1.38439 * 119.39355 * 0.27475 * 25 24 23 27 27 C 1.38969 * 118.46638 * 359.50238 * 26 25 24 28 28 F 1.35109 * 120.50270 * 180.24260 * 27 26 25 29 29 H 0.96996 * 120.00004 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00159 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.47329 * 59.99468 * 12 10 9 32 32 H 1.09005 * 109.47092 * 299.99144 * 12 10 9 33 33 H 1.00903 * 110.99807 * 303.94749 * 13 12 10 34 34 H 1.08997 * 109.47581 * 59.99231 * 14 13 12 35 35 H 1.09005 * 109.46848 * 299.99279 * 14 13 12 36 36 H 0.96703 * 113.99853 * 299.99435 * 17 15 14 37 37 H 1.09000 * 109.47248 * 64.99703 * 18 15 14 38 38 H 1.09007 * 109.46748 * 305.00110 * 18 15 14 39 39 H 0.97005 * 119.99275 * 359.97438 * 19 18 15 40 40 H 1.08003 * 119.51032 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.30062 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.77043 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4473 -3.4210 -0.0021 12 6 5.5608 -2.3705 -0.0021 13 7 6.0504 -3.7555 -0.0027 14 6 7.5188 -3.7947 -0.0021 15 6 7.9903 -5.2503 -0.0022 16 1 7.6136 -5.7542 -0.8924 17 8 7.4956 -5.9112 1.1643 18 6 9.5196 -5.2912 -0.0022 19 7 9.9711 -6.6796 -0.1226 20 6 11.2892 -6.9603 -0.1436 21 8 12.1033 -6.0615 -0.0631 22 6 11.7452 -8.3630 -0.2647 23 7 10.8514 -9.3414 -0.3518 24 6 11.2144 -10.6000 -0.4600 25 6 12.5543 -10.9566 -0.4881 26 6 13.5219 -9.9709 -0.3948 27 6 13.1112 -8.6478 -0.2861 28 9 14.0206 -7.6525 -0.1975 29 1 -0.4850 0.8400 0.0004 30 1 3.8648 -0.3633 -0.0014 31 1 5.9241 -1.8574 0.8882 32 1 5.9241 -1.8560 -0.8918 33 1 5.6750 -4.2721 0.7785 34 1 7.8955 -3.2912 0.8882 35 1 7.8961 -3.2903 -0.8918 36 1 7.7913 -5.5155 1.9957 37 1 9.8945 -4.8667 0.9292 38 1 9.8985 -4.7116 -0.8441 39 1 9.3213 -7.3970 -0.1865 40 1 10.4579 -11.3678 -0.5282 41 1 12.8402 -11.9943 -0.5769 42 1 14.5717 -10.2240 -0.4103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732661797.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:05 Heat of formation + Delta-G solvation = -152.988486 kcal Electronic energy + Delta-G solvation = -27628.152813 eV Core-core repulsion = 23135.722733 eV Total energy + Delta-G solvation = -4492.430080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.09137 -41.57799 -40.40517 -40.17871 -38.97872 -36.34570 -35.73781 -35.39193 -33.74767 -33.71115 -32.28708 -31.25641 -28.81213 -26.81642 -25.69920 -24.67308 -24.07985 -22.75376 -21.90213 -21.29052 -20.29432 -19.44122 -18.73414 -18.38521 -18.05155 -17.51090 -17.28099 -17.10617 -16.83781 -16.77093 -16.48784 -16.17539 -15.79341 -15.77381 -15.17199 -15.02929 -14.97374 -14.71328 -14.53452 -14.41177 -14.34351 -14.17712 -13.84413 -13.50470 -13.49861 -13.22095 -12.96669 -12.70274 -12.41070 -12.01148 -11.97751 -11.61285 -11.51387 -11.18367 -11.04745 -10.73483 -10.41977 -10.36498 -10.24725 -10.05025 -9.32412 -8.41144 -6.02301 -0.62717 -0.05070 1.30512 1.36296 1.45021 1.55017 1.84141 1.95895 2.23370 2.61170 2.68945 2.87745 3.03011 3.15105 3.31447 3.47041 3.59288 3.63072 3.85320 3.86502 3.99234 4.09950 4.16886 4.34382 4.40522 4.48009 4.51952 4.54748 4.65668 4.75292 4.79168 4.90947 5.06378 5.23597 5.47033 5.52514 5.89436 6.02922 6.24135 6.38471 6.58947 6.59995 6.77446 6.88224 6.98360 7.39843 7.96877 8.76566 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.001554 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.297822 B =18014.994110 C =18715.680491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.446 3.554 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.685 5.685 14 C 0.034 3.966 15 C 0.112 3.888 16 H 0.105 0.895 17 O -0.567 6.567 18 C 0.093 3.907 19 N -0.693 5.693 20 C 0.561 3.439 21 O -0.564 6.564 22 C 0.017 3.983 23 N -0.450 5.450 24 C 0.087 3.913 25 C -0.094 4.094 26 C -0.114 4.114 27 C 0.083 3.917 28 F -0.127 7.127 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.349 0.651 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.386 0.614 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.419 0.581 40 H 0.206 0.794 41 H 0.199 0.801 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.082 -19.020 0.231 38.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.234 3.766 11 O -0.499 6.499 12 C -0.070 4.070 13 N -0.318 5.318 14 C -0.096 4.096 15 C 0.052 3.948 16 H 0.123 0.877 17 O -0.373 6.373 18 C -0.031 4.031 19 N -0.344 5.344 20 C 0.346 3.654 21 O -0.443 6.443 22 C -0.121 4.121 23 N -0.161 5.161 24 C -0.074 4.074 25 C -0.113 4.113 26 C -0.140 4.140 27 C 0.060 3.940 28 F -0.105 7.105 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.168 0.832 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.236 0.764 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.257 0.743 40 H 0.222 0.778 41 H 0.216 0.784 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 31.842 -19.087 -0.802 37.134 hybrid contribution 0.797 1.414 1.206 2.022 sum 32.640 -17.674 0.404 37.119 Atomic orbital electron populations 1.69807 1.08173 1.29261 1.50257 1.26128 0.96475 1.02740 0.96003 0.85346 0.79488 0.76618 0.79933 1.18188 1.20032 1.15364 1.19021 0.81590 0.94939 1.50468 0.92772 1.42023 1.05775 1.07619 1.67809 1.21043 0.91129 0.83278 0.81107 1.90555 1.71453 1.32856 1.55067 1.21648 0.89406 0.91838 1.04143 1.59942 1.07776 1.11891 1.52203 1.22611 0.87119 0.96580 1.03295 1.22023 0.89972 0.92945 0.89893 0.87695 1.86655 1.75537 1.58625 1.16525 1.22109 0.94843 0.82469 1.03696 1.45652 1.06391 1.10310 1.72032 1.18060 0.83171 0.87226 0.76930 1.90828 1.54380 1.47460 1.51636 1.21129 0.89672 0.94375 1.06888 1.67631 1.36897 1.01865 1.09737 1.23691 0.97299 0.92062 0.94362 1.22883 0.92167 1.02721 0.93563 1.22162 1.04382 0.88879 0.98580 1.19093 0.86327 0.87280 1.01288 1.91576 1.65511 1.60627 1.92806 0.91139 0.77422 0.90385 0.86615 0.83199 0.92594 0.88454 0.76432 0.90268 0.89801 0.74277 0.77764 0.78406 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.96 21.66 0.30 -56.37 16 2 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 3 Si 0.97 38.81 27.74 68.60 1.90 40.71 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 7 C -0.33 -19.57 10.16 84.04 0.85 -18.72 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.93 5.09 -306.98 -1.56 -29.49 16 10 C 0.45 20.25 7.82 87.66 0.69 20.93 16 11 O -0.61 -34.64 15.78 -3.07 -0.05 -34.69 16 12 C 0.06 1.84 6.17 85.56 0.53 2.36 16 13 N -0.68 -19.46 6.13 -517.93 -3.17 -22.63 16 14 C 0.03 0.61 5.39 86.31 0.47 1.07 16 15 C 0.11 1.95 3.27 30.59 0.10 2.05 16 16 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 17 O -0.57 -10.84 12.62 -148.98 -1.88 -12.72 16 18 C 0.09 1.55 5.31 86.38 0.46 2.00 16 19 N -0.69 -13.29 5.49 -465.84 -2.56 -15.84 16 20 C 0.56 13.30 7.81 86.83 0.68 13.98 16 21 O -0.56 -17.00 15.32 -3.82 -0.06 -17.06 16 22 C 0.02 0.32 6.75 41.90 0.28 0.61 16 23 N -0.45 -6.78 9.54 -184.79 -1.76 -8.54 16 24 C 0.09 0.57 11.18 84.86 0.95 1.52 16 25 C -0.09 -0.23 10.11 22.42 0.23 0.00 16 26 C -0.11 -0.85 10.16 22.49 0.23 -0.62 16 27 C 0.08 1.44 7.32 22.76 0.17 1.61 16 28 F -0.13 -2.90 15.55 44.97 0.70 -2.20 16 29 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.39 15.14 5.76 -92.71 -0.53 14.60 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 33 H 0.35 11.03 7.82 -89.69 -0.70 10.33 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.39 4.87 9.05 -74.05 -0.67 4.20 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.42 7.55 7.80 -92.70 -0.72 6.83 16 40 H 0.21 -0.09 8.06 -2.91 -0.02 -0.12 16 41 H 0.20 -1.29 8.06 -2.91 -0.02 -1.31 16 42 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -90.31 372.18 -3.61 -93.92 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -1.56 Total: 38.49 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 6.09 Total: 26.43 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -8.75 Total: -132.88 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -1.99 Total: -64.47 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.70 Total: -2.20 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.71 kcal Total: -90.31 -3.61 -93.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732661797.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.066 kcal (2) G-P(sol) polarization free energy of solvation -90.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds