Wall clock time and date at job start Wed Apr 1 2020 00:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37923 * 119.93505 * 2 1 4 4 C 1.39588 * 119.86358 * 179.97438 * 3 2 1 5 5 C 1.47791 * 120.12843 * 179.97438 * 4 3 2 6 6 O 1.21561 * 119.99971 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00023 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99717 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46963 * 179.97438 * 8 7 5 10 10 O 1.42908 * 109.46612 * 65.00073 * 9 8 7 11 11 C 1.42900 * 113.99784 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.46831 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47511 * 64.99857 * 12 11 10 14 14 C 1.46496 * 120.00143 * 270.00004 * 13 12 11 15 15 C 1.36938 * 120.00141 * 89.99564 * 13 12 11 16 16 H 1.08005 * 120.00075 * 20.36786 * 15 13 12 17 17 C 1.38811 * 120.00380 * 200.36614 * 15 13 12 18 18 N 1.31618 * 119.99832 * 14.99832 * 17 15 13 19 19 Si 1.86798 * 120.00233 * 194.99668 * 17 15 13 20 20 H 1.48494 * 109.47334 * 85.00098 * 19 17 15 21 21 H 1.48506 * 109.47084 * 205.00255 * 19 17 15 22 22 H 1.48503 * 109.47218 * 324.99989 * 19 17 15 23 23 C 1.39636 * 119.74423 * 359.97438 * 4 3 2 24 24 C 1.37880 * 119.86336 * 359.97438 * 23 4 3 25 25 C 1.38491 * 119.93301 * 179.97438 * 2 1 3 26 26 Cl 1.73592 * 119.86699 * 359.73359 * 25 2 1 27 27 H 1.09002 * 109.47480 * 270.03160 * 1 2 3 28 28 H 1.09005 * 109.46926 * 30.02822 * 1 2 3 29 29 H 1.08999 * 109.46816 * 150.02722 * 1 2 3 30 30 H 1.07997 * 120.06546 * 359.96765 * 3 2 1 31 31 H 0.97003 * 119.99805 * 359.97438 * 7 5 4 32 32 H 1.08994 * 109.47669 * 299.99959 * 8 7 5 33 33 H 1.09002 * 109.47223 * 60.00179 * 8 7 5 34 34 H 1.09000 * 109.47472 * 184.99711 * 9 8 7 35 35 H 1.08994 * 109.47381 * 305.00350 * 9 8 7 36 36 H 1.09004 * 109.46817 * 300.00023 * 11 10 9 37 37 H 1.08997 * 109.47245 * 60.00066 * 11 10 9 38 38 H 1.09003 * 109.46624 * 184.99794 * 12 11 10 39 39 H 1.08996 * 109.47268 * 304.99100 * 12 11 10 40 40 H 1.08997 * 109.47135 * 95.10591 * 14 13 12 41 41 H 1.09003 * 109.47063 * 215.10279 * 14 13 12 42 42 H 1.08997 * 109.47020 * 335.10481 * 14 13 12 43 43 H 0.96998 * 120.00000 * 180.02562 * 18 17 15 44 44 H 1.07998 * 120.07144 * 179.97438 * 23 4 3 45 45 H 1.08003 * 119.93389 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1952 0.0000 4 6 3.5911 1.1935 0.0005 5 6 4.3346 2.4708 0.0000 6 8 3.7304 3.5257 -0.0005 7 7 5.6823 2.4661 0.0000 8 6 6.4192 3.7323 0.0000 9 6 7.9225 3.4475 0.0006 10 8 8.2849 2.7991 -1.2202 11 6 9.6756 2.4865 -1.3217 12 6 9.9474 1.7996 -2.6615 13 7 9.6803 2.7378 -3.7545 14 6 8.3413 2.8138 -4.3439 15 6 10.6822 3.5440 -4.2251 16 1 11.7147 3.2828 -4.0458 17 6 10.3709 4.6970 -4.9326 18 7 9.1455 5.1764 -4.9032 19 14 11.6910 5.5681 -5.9265 20 1 11.7933 4.9424 -7.2693 21 1 11.3340 7.0020 -6.0743 22 1 12.9953 5.4524 -5.2259 23 6 4.2824 -0.0198 0.0016 24 6 3.5834 -1.2082 0.0027 25 6 2.1981 -1.2002 0.0005 26 17 1.3249 -2.7005 0.0082 27 1 -0.3634 0.0006 1.0277 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6553 2.1305 -0.0005 31 1 6.1644 1.6243 0.0007 32 1 6.1579 4.3048 -0.8899 33 1 6.1578 4.3047 0.8900 34 1 8.4701 4.3857 0.0901 35 1 8.1695 2.8009 0.8426 36 1 10.2598 3.4047 -1.2594 37 1 9.9585 1.8198 -0.5072 38 1 10.9893 1.4818 -2.7020 39 1 9.2981 0.9300 -2.7623 40 1 7.7793 3.6167 -3.8669 41 1 8.4254 3.0139 -5.4121 42 1 7.8230 1.8671 -4.1913 43 1 8.9278 5.9819 -5.3979 44 1 5.3624 -0.0273 0.0016 45 1 4.1169 -2.1473 0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734280458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:23 Heat of formation + Delta-G solvation = -63.543164 kcal Electronic energy + Delta-G solvation = -26648.612476 eV Core-core repulsion = 22691.937754 eV Total energy + Delta-G solvation = -3956.674721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38832 -39.80602 -38.98719 -37.46805 -37.21298 -35.84172 -34.03366 -33.37683 -32.22675 -30.82021 -29.38532 -27.91172 -27.79360 -25.27614 -24.78099 -23.23307 -23.12087 -22.12682 -21.36079 -18.85095 -18.76061 -17.81119 -17.59930 -17.39640 -16.97571 -16.55536 -16.22618 -16.10524 -15.70973 -15.35172 -15.21679 -15.14060 -14.97287 -14.73193 -14.23430 -14.08727 -13.81183 -13.48413 -13.37349 -13.15884 -13.07143 -12.99745 -12.70948 -12.53379 -12.52303 -12.45119 -12.43977 -12.31798 -12.00189 -11.78351 -11.76220 -11.66744 -11.16088 -10.60217 -10.37355 -10.26187 -9.99016 -9.72216 -8.75111 -7.77241 -5.23016 -0.43048 0.17710 1.02465 1.46696 1.48939 1.56452 1.65215 2.06049 2.53619 2.64902 2.87038 3.35203 3.60608 3.61701 3.71047 3.77887 3.97206 4.08402 4.14646 4.18849 4.40331 4.47252 4.54215 4.59381 4.61008 4.64695 4.70297 4.74378 4.80183 4.87875 4.94516 5.01535 5.02627 5.14041 5.15663 5.22715 5.25530 5.31784 5.37987 5.61319 5.67225 5.83230 6.35353 6.44036 6.47582 7.09746 7.19261 7.93946 8.38455 9.25720 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.002142 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.404171 B =13066.515823 C =13384.575278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C -0.062 4.062 4 C -0.139 4.139 5 C 0.553 3.447 6 O -0.582 6.582 7 N -0.702 5.702 8 C 0.129 3.871 9 C 0.053 3.947 10 O -0.394 6.394 11 C 0.051 3.949 12 C 0.144 3.856 13 N -0.613 5.613 14 C 0.195 3.805 15 C -0.259 4.259 16 H 0.076 0.924 17 C -0.059 4.059 18 N -0.937 5.937 19 Si 0.965 3.035 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.266 1.266 23 C -0.074 4.074 24 C -0.110 4.110 25 C -0.022 4.022 26 Cl -0.054 7.054 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.415 0.585 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.063 0.937 40 H -0.001 1.001 41 H 0.006 0.994 42 H 0.021 0.979 43 H 0.243 0.757 44 H 0.158 0.842 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.774 -16.303 16.057 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.081 4.081 4 C -0.142 4.142 5 C 0.341 3.659 6 O -0.463 6.463 7 N -0.354 5.354 8 C 0.005 3.995 9 C -0.024 4.024 10 O -0.314 6.314 11 C -0.028 4.028 12 C 0.018 3.982 13 N -0.336 5.336 14 C 0.049 3.951 15 C -0.389 4.389 16 H 0.094 0.906 17 C -0.254 4.254 18 N -0.584 5.584 19 Si 0.794 3.206 20 H -0.214 1.214 21 H -0.227 1.227 22 H -0.191 1.191 23 C -0.092 4.092 24 C -0.128 4.128 25 C -0.049 4.049 26 Cl -0.025 7.025 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.253 0.747 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.018 0.982 41 H 0.024 0.976 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.176 0.824 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.416 -15.607 15.830 25.965 hybrid contribution 0.862 0.840 -0.633 1.360 sum -12.554 -14.767 15.197 24.630 Atomic orbital electron populations 1.20949 0.88354 1.04299 1.04000 1.19928 0.98225 0.90573 1.00102 1.21161 0.92645 0.98337 0.95980 1.19994 0.94591 0.92859 1.06749 1.18578 0.82485 0.89031 0.75766 1.90756 1.69331 1.34120 1.52103 1.45733 1.05541 1.10527 1.73629 1.21327 0.89983 0.86022 1.02143 1.22717 0.93414 0.98161 0.88085 1.87970 1.25717 1.79021 1.38648 1.23265 0.81244 0.98515 0.99732 1.21160 0.99854 0.91814 0.85376 1.44133 1.08183 1.43651 1.37649 1.20315 0.85133 0.94773 0.94836 1.19583 0.88439 1.01273 1.29596 0.90608 1.25754 0.98410 0.97803 1.03409 1.70303 1.20249 1.22780 1.45071 0.85302 0.79305 0.76870 0.79084 1.21448 1.22716 1.19076 1.21492 1.01322 0.90183 0.96229 1.21277 0.91679 0.99979 0.99886 1.21244 0.93024 0.87252 1.03397 1.98376 1.76388 1.31165 1.96528 0.89338 0.90227 0.90158 0.84502 0.74723 0.93721 0.88742 0.92560 0.89828 0.96100 0.90933 0.90882 0.91900 0.98234 0.97565 0.96016 0.94737 0.82411 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.60 71.24 0.68 -0.87 16 2 C -0.09 -1.54 5.88 -19.88 -0.12 -1.65 16 3 C -0.06 -1.33 9.24 22.52 0.21 -1.12 16 4 C -0.14 -3.12 5.87 -20.09 -0.12 -3.23 16 5 C 0.55 15.65 7.77 86.77 0.67 16.32 16 6 O -0.58 -21.09 16.35 -3.91 -0.06 -21.16 16 7 N -0.70 -17.36 5.45 -466.02 -2.54 -19.90 16 8 C 0.13 3.57 6.06 86.38 0.52 4.09 16 9 C 0.05 1.40 6.07 71.98 0.44 1.84 16 10 O -0.39 -13.65 9.85 -148.98 -1.47 -15.12 16 11 C 0.05 1.71 6.28 71.98 0.45 2.16 16 12 C 0.14 5.41 6.11 86.38 0.53 5.94 16 13 N -0.61 -30.69 2.89 -726.97 -2.10 -32.79 16 14 C 0.19 10.13 8.62 127.77 1.10 11.23 16 15 C -0.26 -14.12 9.68 84.03 0.81 -13.31 16 16 H 0.08 3.93 7.86 -2.91 -0.02 3.91 16 17 C -0.06 -3.36 5.06 84.86 0.43 -2.93 16 18 N -0.94 -57.29 10.67 21.65 0.23 -57.06 16 19 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C -0.07 -1.21 9.54 22.52 0.21 -0.99 16 24 C -0.11 -1.60 9.81 22.26 0.22 -1.38 16 25 C -0.02 -0.36 6.32 22.40 0.14 -0.22 16 26 Cl -0.05 -0.76 27.27 -2.72 -0.07 -0.84 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.96 8.08 -2.38 -0.02 0.94 16 29 H 0.08 0.96 6.89 -2.39 -0.02 0.94 16 30 H 0.14 3.08 7.65 -2.91 -0.02 3.06 16 31 H 0.41 7.96 6.50 -92.71 -0.60 7.36 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 39 H 0.06 2.12 7.86 -2.39 -0.02 2.10 16 40 H 0.00 -0.04 7.40 -2.39 -0.02 -0.06 16 41 H 0.01 0.32 7.21 -2.39 -0.02 0.30 16 42 H 0.02 0.98 7.83 -2.39 -0.02 0.96 16 43 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.16 1.83 6.40 -2.91 -0.02 1.81 16 45 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -73.84 390.39 2.60 -71.24 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.40 Total: 12.05 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.19 Total: 15.88 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -4.41 Total: -109.75 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.53 Total: -36.27 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.07 Total: -0.84 kcal Total: -73.84 2.60 -71.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734280458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.695 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds