Wall clock time and date at job start Wed Apr 1 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37914 * 120.06366 * 2 1 4 4 C 1.38498 * 120.13046 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 119.86881 * 179.97438 * 4 3 2 6 6 C 1.38537 * 120.26355 * 359.97438 * 4 3 2 7 7 C 1.37870 * 120.12943 * 359.97438 * 6 4 3 8 8 C 1.39589 * 120.06810 * 179.97438 * 2 1 3 9 9 C 1.47782 * 120.13065 * 359.73710 * 8 2 1 10 10 O 1.21558 * 120.00392 * 310.51500 * 9 8 2 11 11 N 1.34776 * 120.00146 * 130.51654 * 9 8 2 12 12 C 1.46501 * 119.99921 * 4.24434 * 11 9 8 13 13 C 1.46502 * 120.00297 * 184.24266 * 11 9 8 14 14 C 1.53000 * 109.46881 * 90.00029 * 13 11 9 15 15 O 1.42897 * 109.47518 * 65.00110 * 14 13 11 16 16 C 1.42897 * 114.00677 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47357 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.47080 * 65.00557 * 17 16 15 19 19 C 1.36936 * 120.00044 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99781 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00008 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00222 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00109 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46802 * 90.00203 * 23 21 19 25 25 H 1.48501 * 109.47110 * 210.00018 * 23 21 19 26 26 H 1.48493 * 109.47029 * 330.00456 * 23 21 19 27 27 H 1.08999 * 109.46298 * 274.25232 * 1 2 3 28 28 H 1.08998 * 109.47349 * 34.24553 * 1 2 3 29 29 H 1.08998 * 109.46891 * 154.25563 * 1 2 3 30 30 H 1.07997 * 119.93731 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.93558 * 180.02562 * 6 4 3 32 32 H 1.08004 * 120.06535 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47492 * 84.86856 * 12 11 9 34 34 H 1.09005 * 109.47619 * 204.86881 * 12 11 9 35 35 H 1.09008 * 109.47100 * 324.86919 * 12 11 9 36 36 H 1.09001 * 109.47286 * 209.99901 * 13 11 9 37 37 H 1.09001 * 109.47074 * 330.00005 * 13 11 9 38 38 H 1.08998 * 109.47284 * 184.99961 * 14 13 11 39 39 H 1.08999 * 109.47533 * 305.00106 * 14 13 11 40 40 H 1.09004 * 109.47033 * 300.00496 * 16 15 14 41 41 H 1.09001 * 109.46917 * 59.99957 * 16 15 14 42 42 H 1.09009 * 109.46981 * 184.99713 * 17 16 15 43 43 H 1.08999 * 109.47360 * 305.00037 * 17 16 15 44 44 H 0.97000 * 120.00033 * 359.97438 * 18 17 16 45 45 H 0.96995 * 120.00198 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1936 0.0000 4 6 3.5829 1.1952 -0.0005 5 17 4.4457 2.7016 -0.0012 6 6 4.2825 -0.0005 -0.0005 7 6 3.6028 -1.2000 0.0005 8 6 2.2064 -1.2080 0.0005 9 6 1.4720 -2.4904 0.0070 10 8 0.5796 -2.6758 0.8113 11 7 1.7915 -3.4545 -0.8790 12 6 2.9267 -3.2685 -1.7862 13 6 1.0038 -4.6884 -0.9348 14 6 -0.1473 -4.5141 -1.9275 15 8 0.3810 -4.3430 -3.2442 16 6 -0.6164 -4.1715 -4.2531 17 6 0.0597 -3.9977 -5.6144 18 7 0.7635 -5.2321 -5.9713 19 6 1.4465 -5.3130 -7.1554 20 1 1.4659 -4.4671 -7.8264 21 6 2.1137 -6.4824 -7.4933 22 7 2.0896 -7.5137 -6.6757 23 14 3.0448 -6.5931 -9.1089 24 1 4.4462 -6.1464 -8.9042 25 1 3.0383 -7.9984 -9.5887 26 1 2.3902 -5.7224 -10.1181 27 1 -0.3632 0.0762 1.0249 28 1 -0.3634 0.8495 -0.5783 29 1 -0.3633 -0.9257 -0.4464 30 1 1.6580 2.1289 -0.0004 31 1 5.3624 0.0069 -0.0005 32 1 4.1492 -2.1316 0.0009 33 1 3.8463 -3.5682 -1.2837 34 1 2.7838 -3.8800 -2.6772 35 1 2.9947 -2.2190 -2.0728 36 1 1.6407 -5.5119 -1.2579 37 1 0.6007 -4.9072 0.0541 38 1 -0.7846 -5.3981 -1.9039 39 1 -0.7331 -3.6365 -1.6543 40 1 -1.2631 -5.0487 -4.2774 41 1 -1.2123 -3.2870 -4.0282 42 1 -0.6951 -3.7787 -6.3697 43 1 0.7726 -3.1747 -5.5637 44 1 0.7457 -5.9921 -5.3688 45 1 2.5555 -8.3309 -6.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734614494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:43 Heat of formation + Delta-G solvation = -47.949770 kcal Electronic energy + Delta-G solvation = -27156.490455 eV Core-core repulsion = 23200.491914 eV Total energy + Delta-G solvation = -3955.998541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79315 -38.91806 -37.71520 -36.80585 -35.72231 -34.39916 -33.07294 -31.97876 -31.27387 -29.67560 -27.66729 -27.51860 -26.49132 -24.19874 -23.50553 -22.82487 -21.81396 -21.14386 -19.63374 -17.62346 -17.16763 -16.95548 -16.61675 -16.35851 -15.92916 -15.78737 -15.00212 -14.81365 -14.50585 -14.27702 -14.01217 -13.81128 -13.58667 -13.22853 -13.10666 -13.04807 -12.95248 -12.65700 -12.62973 -12.31608 -12.19624 -11.85311 -11.79577 -11.66578 -11.56020 -11.33713 -11.17196 -10.91133 -10.80724 -10.50526 -10.04919 -10.00719 -9.70338 -9.27187 -9.25177 -9.01654 -8.87141 -8.72410 -6.88420 -5.73512 -3.01575 0.47135 0.87434 1.71400 2.44238 2.83860 3.27783 3.44490 3.49604 3.51273 3.98417 4.24097 4.33093 4.39840 4.61511 4.73657 4.91362 5.04402 5.12125 5.13746 5.27521 5.30776 5.39600 5.42171 5.44987 5.49913 5.54334 5.57145 5.61508 5.70043 5.72953 5.77814 5.79995 5.88113 5.92735 6.00930 6.06076 6.30366 6.34518 6.41519 6.60350 6.74647 7.22749 7.56973 7.71492 7.96603 8.45174 9.56764 10.15209 10.51311 11.49297 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.002554 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.188857 B =10959.157735 C =12176.747166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.022 4.022 3 C -0.118 4.118 4 C -0.013 4.013 5 Cl -0.067 7.067 6 C -0.122 4.122 7 C -0.071 4.071 8 C -0.121 4.121 9 C 0.560 3.440 10 O -0.536 6.536 11 N -0.596 5.596 12 C 0.074 3.926 13 C 0.118 3.882 14 C 0.045 3.955 15 O -0.370 6.370 16 C 0.059 3.941 17 C 0.155 3.845 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.387 0.613 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 16.399 17.667 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.023 4.023 3 C -0.137 4.137 4 C -0.040 4.040 5 Cl -0.038 7.038 6 C -0.141 4.141 7 C -0.090 4.090 8 C -0.125 4.125 9 C 0.347 3.653 10 O -0.414 6.414 11 N -0.327 5.327 12 C -0.069 4.069 13 C -0.004 4.004 14 C -0.033 4.033 15 O -0.289 6.289 16 C -0.018 4.018 17 C 0.027 3.973 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.221 0.779 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.444 16.449 17.869 24.291 hybrid contribution 0.479 -0.203 -0.773 0.932 sum 0.923 16.245 17.096 23.601 Atomic orbital electron populations 1.20876 0.89668 1.03413 1.03332 1.19841 0.96784 0.90760 0.94932 1.20866 0.91882 0.98580 1.02338 1.21112 0.92509 0.87383 1.03003 1.98385 1.76876 1.31816 1.96725 1.20976 1.00767 0.90319 1.01988 1.21359 0.92687 0.98469 0.96495 1.19892 0.93960 0.93443 1.05167 1.18253 0.82915 0.83348 0.80736 1.90778 1.31585 1.80415 1.38628 1.47705 1.31693 1.17536 1.35802 1.22076 0.86964 1.03360 0.94466 1.21618 0.93330 0.86160 0.99334 1.22850 0.96009 1.00115 0.84329 1.87999 1.32740 1.93597 1.14587 1.22774 0.90954 0.98944 0.89098 1.20683 0.94801 0.91431 0.90356 1.42283 1.60877 1.11746 1.22247 1.19230 1.23878 0.98061 0.95725 0.91302 1.24726 1.01393 0.96314 0.98596 1.69670 1.47817 1.03797 1.36848 0.86204 0.79933 0.76734 0.83410 1.21752 1.21827 1.20821 0.89965 0.91096 0.90789 0.84314 0.84268 0.84131 0.92720 0.88495 0.91188 0.88877 0.88451 0.92444 0.93694 0.93383 0.94059 0.95117 0.95696 0.77943 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.15 36.01 0.33 -0.80 16 2 C -0.02 -0.23 5.91 -104.23 -0.62 -0.85 16 3 C -0.12 -1.07 9.48 -39.60 -0.38 -1.45 16 4 C -0.01 -0.12 6.33 -39.38 -0.25 -0.37 16 5 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 6 C -0.12 -1.04 9.81 -39.61 -0.39 -1.43 16 7 C -0.07 -0.66 7.82 -39.19 -0.31 -0.97 16 8 C -0.12 -1.36 4.86 -104.97 -0.51 -1.87 16 9 C 0.56 7.27 6.28 -12.36 -0.08 7.19 16 10 O -0.54 -8.22 15.19 5.31 0.08 -8.13 16 11 N -0.60 -7.36 2.84 -182.71 -0.52 -7.88 16 12 C 0.07 0.84 8.85 59.85 0.53 1.37 16 13 C 0.12 1.45 5.82 -4.04 -0.02 1.43 16 14 C 0.05 0.61 6.28 37.16 0.23 0.84 16 15 O -0.37 -6.22 9.21 -35.23 -0.32 -6.54 16 16 C 0.06 0.99 6.07 37.16 0.23 1.21 16 17 C 0.16 3.15 6.65 -4.04 -0.03 3.13 16 18 N -0.73 -18.60 5.55 -59.91 -0.33 -18.93 16 19 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 29 H 0.07 0.85 6.50 -51.93 -0.34 0.51 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.08 6.37 -52.48 -0.33 0.75 16 33 H 0.05 0.50 7.08 -51.93 -0.37 0.13 16 34 H 0.10 1.35 7.22 -51.93 -0.38 0.97 16 35 H 0.07 0.77 6.33 -51.92 -0.33 0.44 16 36 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.10 1.13 7.37 -51.93 -0.38 0.75 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.39 10.48 7.67 -40.82 -0.31 10.17 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -32.69 388.43 -9.17 -41.86 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.63 Total: 5.87 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.50 Total: 0.09 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.13 Total: -54.29 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.24 Total: -14.68 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.69 -9.17 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734614494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.088 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds