Wall clock time and date at job start Wed Apr 1 2020 00:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37914 * 120.06366 * 2 1 4 4 C 1.38498 * 120.13046 * 180.02562 * 3 2 1 5 5 Cl 1.73595 * 119.86881 * 179.97438 * 4 3 2 6 6 C 1.38537 * 120.26355 * 359.97438 * 4 3 2 7 7 C 1.37870 * 120.12943 * 359.97438 * 6 4 3 8 8 C 1.39589 * 120.06810 * 179.97438 * 2 1 3 9 9 C 1.47782 * 120.13065 * 359.73710 * 8 2 1 10 10 O 1.21558 * 120.00392 * 310.51500 * 9 8 2 11 11 N 1.34776 * 120.00146 * 130.51654 * 9 8 2 12 12 C 1.46501 * 119.99921 * 4.24434 * 11 9 8 13 13 C 1.46502 * 120.00297 * 184.24266 * 11 9 8 14 14 C 1.53000 * 109.46881 * 90.00029 * 13 11 9 15 15 O 1.42897 * 109.47518 * 65.00110 * 14 13 11 16 16 C 1.42897 * 114.00677 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47357 * 179.97438 * 16 15 14 18 18 N 1.46503 * 109.47080 * 65.00557 * 17 16 15 19 19 C 1.36936 * 120.00044 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99781 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00008 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00222 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00109 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46802 * 90.00203 * 23 21 19 25 25 H 1.48501 * 109.47110 * 210.00018 * 23 21 19 26 26 H 1.48493 * 109.47029 * 330.00456 * 23 21 19 27 27 H 1.08999 * 109.46298 * 274.25232 * 1 2 3 28 28 H 1.08998 * 109.47349 * 34.24553 * 1 2 3 29 29 H 1.08998 * 109.46891 * 154.25563 * 1 2 3 30 30 H 1.07997 * 119.93731 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.93558 * 180.02562 * 6 4 3 32 32 H 1.08004 * 120.06535 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47492 * 84.86856 * 12 11 9 34 34 H 1.09005 * 109.47619 * 204.86881 * 12 11 9 35 35 H 1.09008 * 109.47100 * 324.86919 * 12 11 9 36 36 H 1.09001 * 109.47286 * 209.99901 * 13 11 9 37 37 H 1.09001 * 109.47074 * 330.00005 * 13 11 9 38 38 H 1.08998 * 109.47284 * 184.99961 * 14 13 11 39 39 H 1.08999 * 109.47533 * 305.00106 * 14 13 11 40 40 H 1.09004 * 109.47033 * 300.00496 * 16 15 14 41 41 H 1.09001 * 109.46917 * 59.99957 * 16 15 14 42 42 H 1.09009 * 109.46981 * 184.99713 * 17 16 15 43 43 H 1.08999 * 109.47360 * 305.00037 * 17 16 15 44 44 H 0.97000 * 120.00033 * 359.97438 * 18 17 16 45 45 H 0.96995 * 120.00198 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1936 0.0000 4 6 3.5829 1.1952 -0.0005 5 17 4.4457 2.7016 -0.0012 6 6 4.2825 -0.0005 -0.0005 7 6 3.6028 -1.2000 0.0005 8 6 2.2064 -1.2080 0.0005 9 6 1.4720 -2.4904 0.0070 10 8 0.5796 -2.6758 0.8113 11 7 1.7915 -3.4545 -0.8790 12 6 2.9267 -3.2685 -1.7862 13 6 1.0038 -4.6884 -0.9348 14 6 -0.1473 -4.5141 -1.9275 15 8 0.3810 -4.3430 -3.2442 16 6 -0.6164 -4.1715 -4.2531 17 6 0.0597 -3.9977 -5.6144 18 7 0.7635 -5.2321 -5.9713 19 6 1.4465 -5.3130 -7.1554 20 1 1.4659 -4.4671 -7.8264 21 6 2.1137 -6.4824 -7.4933 22 7 2.0896 -7.5137 -6.6757 23 14 3.0448 -6.5931 -9.1089 24 1 4.4462 -6.1464 -8.9042 25 1 3.0383 -7.9984 -9.5887 26 1 2.3902 -5.7224 -10.1181 27 1 -0.3632 0.0762 1.0249 28 1 -0.3634 0.8495 -0.5783 29 1 -0.3633 -0.9257 -0.4464 30 1 1.6580 2.1289 -0.0004 31 1 5.3624 0.0069 -0.0005 32 1 4.1492 -2.1316 0.0009 33 1 3.8463 -3.5682 -1.2837 34 1 2.7838 -3.8800 -2.6772 35 1 2.9947 -2.2190 -2.0728 36 1 1.6407 -5.5119 -1.2579 37 1 0.6007 -4.9072 0.0541 38 1 -0.7846 -5.3981 -1.9039 39 1 -0.7331 -3.6365 -1.6543 40 1 -1.2631 -5.0487 -4.2774 41 1 -1.2123 -3.2870 -4.0282 42 1 -0.6951 -3.7787 -6.3697 43 1 0.7726 -3.1747 -5.5637 44 1 0.7457 -5.9921 -5.3688 45 1 2.5555 -8.3309 -6.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734614494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:42 Heat of formation + Delta-G solvation = -67.375393 kcal Electronic energy + Delta-G solvation = -27157.332813 eV Core-core repulsion = 23200.491914 eV Total energy + Delta-G solvation = -3956.840899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67595 -39.78844 -38.94935 -37.50445 -36.87999 -36.15998 -33.81224 -33.46979 -32.55709 -30.81332 -29.26002 -28.31053 -27.45621 -25.53697 -25.05947 -23.67499 -22.78847 -22.61307 -20.53765 -19.23010 -18.54898 -17.88638 -17.52701 -17.37800 -17.02120 -16.93996 -16.43212 -16.00153 -15.67521 -15.40673 -15.12447 -14.97078 -14.69036 -14.53840 -14.30019 -14.20716 -13.93455 -13.77473 -13.48635 -13.35709 -13.17491 -13.05425 -12.95187 -12.74473 -12.72403 -12.58038 -12.48164 -12.24083 -12.10847 -11.90297 -11.85294 -11.68242 -11.03598 -10.94742 -10.50649 -9.96936 -9.81993 -9.67067 -8.96316 -7.91249 -5.19712 -0.29202 0.17685 1.02641 1.49360 1.50121 1.51011 1.59375 1.92009 2.50471 2.58596 2.77339 3.37087 3.42587 3.63848 3.71271 3.96410 4.04590 4.05710 4.11188 4.22275 4.27607 4.31643 4.38066 4.44766 4.46810 4.51373 4.59100 4.61478 4.66766 4.68812 4.77868 4.82383 4.97316 4.99674 5.04140 5.09098 5.13227 5.14478 5.30276 5.42793 5.51188 5.60851 6.22612 6.29909 6.36749 6.98446 7.37108 8.12698 8.37470 9.32229 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.002554 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.188857 B =10959.157735 C =12176.747166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.034 4.034 3 C -0.118 4.118 4 C -0.018 4.018 5 Cl -0.060 7.060 6 C -0.120 4.120 7 C -0.070 4.070 8 C -0.142 4.142 9 C 0.560 3.440 10 O -0.566 6.566 11 N -0.597 5.597 12 C 0.079 3.921 13 C 0.118 3.882 14 C 0.047 3.953 15 O -0.390 6.390 16 C 0.067 3.933 17 C 0.152 3.848 18 N -0.739 5.739 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.270 1.270 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.022 0.978 44 H 0.376 0.624 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 17.917 17.567 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.035 4.035 3 C -0.136 4.136 4 C -0.045 4.045 5 Cl -0.031 7.031 6 C -0.138 4.138 7 C -0.089 4.089 8 C -0.145 4.145 9 C 0.349 3.651 10 O -0.446 6.446 11 N -0.327 5.327 12 C -0.063 4.063 13 C -0.004 4.004 14 C -0.031 4.031 15 O -0.310 6.310 16 C -0.009 4.009 17 C 0.026 3.974 18 N -0.382 5.382 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.195 1.195 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.174 0.826 31 H 0.178 0.822 32 H 0.172 0.828 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.102 18.011 17.758 25.318 hybrid contribution 0.259 -0.582 -0.696 0.944 sum 1.361 17.430 17.062 24.428 Atomic orbital electron populations 1.20842 0.89540 1.03060 1.03493 1.19984 0.97117 0.91046 0.95395 1.21029 0.92116 0.98760 1.01737 1.21272 0.92695 0.87895 1.02620 1.98390 1.76674 1.31401 1.96654 1.21225 1.01836 0.89782 1.00988 1.21509 0.91944 0.99470 0.95952 1.19909 0.94827 0.92751 1.07025 1.18529 0.82541 0.83827 0.80175 1.90751 1.32997 1.81018 1.39848 1.47775 1.31826 1.17438 1.35694 1.22056 0.87611 1.03107 0.93541 1.21618 0.93151 0.86355 0.99289 1.22951 0.96573 1.00563 0.83010 1.87972 1.33423 1.93815 1.15781 1.22633 0.90567 1.00267 0.87483 1.20844 0.94614 0.89173 0.92808 1.42469 1.61219 1.13076 1.21453 1.19632 1.23370 0.98097 0.96507 0.90747 1.25547 1.02921 0.96185 1.02075 1.69828 1.49100 1.04222 1.38727 0.85154 0.78586 0.76435 0.79663 1.21353 1.22259 1.19484 0.89938 0.89157 0.92954 0.82621 0.82192 0.82756 0.90247 0.91182 0.90742 0.88787 0.87779 0.91411 0.93647 0.93413 0.91122 0.94082 0.95982 0.79240 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.15 71.24 0.65 -1.48 16 2 C -0.03 -0.68 5.91 -19.61 -0.12 -0.80 16 3 C -0.12 -1.96 9.48 22.25 0.21 -1.75 16 4 C -0.02 -0.29 6.33 22.40 0.14 -0.15 16 5 Cl -0.06 -0.89 28.95 -2.72 -0.08 -0.97 16 6 C -0.12 -1.80 9.81 22.25 0.22 -1.58 16 7 C -0.07 -1.19 7.82 22.52 0.18 -1.02 16 8 C -0.14 -3.08 4.86 -20.09 -0.10 -3.18 16 9 C 0.56 14.43 6.28 86.77 0.54 14.98 16 10 O -0.57 -17.49 15.19 -3.90 -0.06 -17.55 16 11 N -0.60 -14.54 2.84 -850.25 -2.41 -16.95 16 12 C 0.08 1.76 8.85 127.77 1.13 2.89 16 13 C 0.12 2.89 5.82 86.38 0.50 3.40 16 14 C 0.05 1.24 6.28 71.98 0.45 1.69 16 15 O -0.39 -13.00 9.21 -148.98 -1.37 -14.37 16 16 C 0.07 2.17 6.07 71.98 0.44 2.61 16 17 C 0.15 6.08 6.65 86.38 0.57 6.66 16 18 N -0.74 -37.91 5.55 -343.45 -1.91 -39.82 16 19 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 21 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 23 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.28 8.11 -2.39 -0.02 1.26 16 29 H 0.05 1.21 6.50 -2.39 -0.02 1.19 16 30 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.15 2.08 6.37 -2.91 -0.02 2.06 16 33 H 0.08 1.34 7.08 -2.39 -0.02 1.32 16 34 H 0.07 1.97 7.22 -2.38 -0.02 1.95 16 35 H 0.07 1.57 6.33 -2.38 -0.02 1.56 16 36 H 0.09 2.27 8.07 -2.39 -0.02 2.25 16 37 H 0.10 2.41 7.37 -2.39 -0.02 2.39 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.38 20.67 7.67 -92.71 -0.71 19.96 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.51 388.43 2.91 -66.60 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.29 Total: 28.44 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.13 Total: 5.59 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -4.04 Total: -115.69 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.43 Total: -31.92 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -69.51 2.91 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734614494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.775 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds