Wall clock time and date at job start Tue Mar 31 2020 23:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47180 * 239.99670 * 3 2 1 5 5 H 1.48501 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47200 * 119.99699 * 3 2 1 7 7 C 1.38797 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00490 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00184 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47150 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00242 * 179.97438 * 13 11 10 15 15 H 1.09003 * 112.84928 * 336.19918 * 14 13 11 16 16 C 1.53781 * 113.61679 * 107.49871 * 14 13 11 17 17 C 1.53775 * 87.08156 * 139.98239 * 16 14 13 18 18 H 1.09009 * 113.68767 * 89.13097 * 17 16 14 19 19 N 1.46496 * 113.61731 * 220.01955 * 17 16 14 20 20 C 1.34773 * 120.00379 * 252.49877 * 19 17 16 21 21 O 1.21278 * 119.99737 * 0.02562 * 20 19 17 22 22 C 1.50706 * 120.00267 * 179.97438 * 20 19 17 23 23 C 1.52994 * 119.80896 * 248.97834 * 22 20 19 24 24 C 1.54500 * 122.36585 * 176.59647 * 22 20 19 25 25 H 1.09004 * 122.37087 * 359.45961 * 24 22 20 26 26 C 1.54481 * 104.06452 * 223.21990 * 24 22 20 27 27 O 1.44419 * 104.80345 * 336.02342 * 26 24 22 28 28 C 1.44430 * 105.27252 * 40.51013 * 27 26 24 29 29 C 1.53774 * 113.61869 * 205.00064 * 14 13 11 30 30 H 0.96995 * 120.00248 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46735 * 60.00416 * 10 9 7 32 32 H 1.08994 * 109.47278 * 299.99898 * 10 9 7 33 33 H 0.97001 * 119.99831 * 0.02562 * 13 11 10 34 34 H 1.09008 * 113.60808 * 25.43619 * 16 14 13 35 35 H 1.09001 * 113.61800 * 254.53846 * 16 14 13 36 36 H 0.97003 * 119.99741 * 72.49776 * 19 17 16 37 37 H 1.09000 * 117.43606 * 355.36686 * 23 22 20 38 38 H 1.09007 * 117.43076 * 140.01128 * 23 22 20 39 39 H 1.09000 * 110.37363 * 217.19563 * 26 24 22 40 40 H 1.09002 * 110.46481 * 94.90253 * 26 24 22 41 41 H 1.09002 * 110.36890 * 200.65134 * 28 27 26 42 42 H 1.09001 * 110.46632 * 78.37213 * 28 27 26 43 43 H 1.08998 * 113.61831 * 105.47117 * 29 14 13 44 44 H 1.09000 * 113.69258 * 334.57722 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0021 13 7 2.8443 -6.3431 0.0018 14 6 2.3307 -7.7151 0.0030 15 1 1.3216 -7.7889 0.4086 16 6 2.5111 -8.4416 -1.3403 17 6 2.8736 -9.6938 -0.5246 18 1 2.0135 -10.3107 -0.2637 19 7 3.9764 -10.4690 -1.0983 20 6 3.7302 -11.6535 -1.6921 21 8 2.5956 -12.0775 -1.7520 22 6 4.8647 -12.4506 -2.2827 23 6 4.9704 -12.6137 -3.8003 24 6 4.6563 -13.8484 -2.9070 25 1 3.6798 -14.3315 -2.9437 26 6 5.8433 -14.6795 -2.3716 27 8 6.8604 -13.7058 -2.0506 28 6 6.1529 -12.6025 -1.4439 29 6 3.3106 -8.7393 0.5990 30 1 -0.4850 0.8400 -0.0004 31 1 3.1245 -3.7313 0.8906 32 1 3.1245 -3.7314 -0.8894 33 1 3.8011 -6.1834 0.0022 34 1 3.3370 -8.0556 -1.9379 35 1 1.5870 -8.5434 -1.9093 36 1 4.8839 -10.1296 -1.0507 37 1 4.1632 -12.2032 -4.4069 38 1 5.9648 -12.5582 -4.2433 39 1 6.2031 -15.3652 -3.1388 40 1 5.5503 -15.2308 -1.4781 41 1 6.7507 -11.6926 -1.4982 42 1 5.9061 -12.8319 -0.4073 43 1 3.0320 -9.0816 1.5957 44 1 4.3554 -8.4359 0.5325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744430104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:33 Heat of formation + Delta-G solvation = -61.633751 kcal Electronic energy + Delta-G solvation = -25855.086391 eV Core-core repulsion = 21900.538174 eV Total energy + Delta-G solvation = -3954.548217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39458 -40.27851 -39.07908 -37.90285 -34.83700 -34.38090 -32.68427 -32.44327 -29.57704 -29.05864 -26.48828 -26.06685 -25.56186 -25.06310 -22.83255 -21.35523 -20.71115 -20.39915 -19.82579 -18.11621 -17.80375 -17.19182 -16.49506 -16.36953 -16.09627 -15.81524 -15.40913 -15.22497 -14.92975 -14.82149 -14.70295 -14.35977 -13.85112 -13.41790 -13.40808 -13.20496 -12.93368 -12.86055 -12.63613 -12.60105 -12.07971 -12.05005 -11.61144 -11.55885 -11.15370 -11.11908 -11.06306 -11.05125 -10.78438 -10.73886 -10.24664 -10.15126 -9.84139 -9.49877 -9.40779 -9.07990 -8.90851 -8.26221 -6.52106 -6.23088 -3.94095 1.99747 2.53681 2.87825 3.01456 3.03701 3.22092 3.23549 3.26744 3.30709 3.69852 3.83611 3.94494 4.07419 4.18796 4.19348 4.22408 4.32356 4.55192 4.62710 4.63913 4.79527 4.96441 5.02486 5.07792 5.09694 5.11984 5.15468 5.21590 5.29134 5.34261 5.38875 5.50613 5.55119 5.60788 5.78217 5.85238 5.89627 6.04755 6.10113 6.15482 6.58757 7.02709 7.57381 7.65148 7.75512 8.33198 8.56232 9.21992 10.84264 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030259 B = 0.001609 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.108130 B =17403.114411 C =17774.407136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.515 6.515 13 N -0.727 5.727 14 C 0.131 3.869 15 H 0.120 0.880 16 C -0.164 4.164 17 C 0.123 3.877 18 H 0.120 0.880 19 N -0.711 5.711 20 C 0.562 3.438 21 O -0.533 6.533 22 C -0.218 4.218 23 C -0.102 4.102 24 C -0.163 4.163 25 H 0.135 0.865 26 C 0.069 3.931 27 O -0.367 6.367 28 C 0.084 3.916 29 C -0.153 4.153 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.402 0.598 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.528 -28.101 -3.339 32.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.389 6.389 13 N -0.380 5.380 14 C 0.024 3.976 15 H 0.138 0.862 16 C -0.205 4.205 17 C 0.018 3.982 18 H 0.138 0.862 19 N -0.361 5.361 20 C 0.348 3.652 21 O -0.409 6.409 22 C -0.221 4.221 23 C -0.139 4.139 24 C -0.182 4.182 25 H 0.153 0.847 26 C -0.008 4.008 27 O -0.286 6.286 28 C 0.007 3.993 29 C -0.192 4.192 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.745 -28.637 -3.380 31.527 hybrid contribution 2.609 1.633 0.107 3.080 sum 15.354 -27.004 -3.272 31.235 Atomic orbital electron populations 1.70003 1.05954 1.27601 1.46685 1.24988 0.95026 0.99022 0.94503 0.86224 0.79240 0.81246 0.78783 1.19954 1.20789 1.19939 1.22826 0.94867 0.91676 1.59175 0.90978 1.85415 1.04849 0.96308 1.96726 1.23540 1.06638 0.95400 1.04914 1.20368 0.86601 0.86361 0.74751 1.90707 1.15387 1.85554 1.47277 1.45924 1.09719 1.04924 1.77467 1.22125 0.99257 0.80252 0.95919 0.86242 1.23995 1.03120 0.95199 0.98149 1.22376 0.90862 0.90776 0.94157 0.86201 1.45866 1.11068 1.20471 1.58710 1.19068 0.88256 0.80662 0.77210 1.90733 1.22676 1.69919 1.57582 1.23223 0.98071 1.03189 0.97658 1.23329 1.04289 0.97591 0.88676 1.24620 1.01701 0.88525 1.03345 0.84697 1.23031 0.86346 0.91457 0.99926 1.89191 1.29804 1.29108 1.80453 1.22818 0.89875 0.91176 0.95423 1.23759 1.00518 0.95731 0.99151 0.92100 0.89193 0.89223 0.76751 0.89291 0.90259 0.76374 0.87015 0.87224 0.87988 0.90826 0.88198 0.90896 0.89772 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 12 O -0.52 -11.43 15.46 5.55 0.09 -11.35 16 13 N -0.73 -8.81 5.35 -53.02 -0.28 -9.09 16 14 C 0.13 1.37 4.24 -67.12 -0.28 1.09 16 15 H 0.12 1.50 7.46 -51.93 -0.39 1.12 16 16 C -0.16 -1.57 7.68 -25.92 -0.20 -1.76 16 17 C 0.12 0.99 4.24 -67.12 -0.28 0.70 16 18 H 0.12 1.15 7.47 -51.92 -0.39 0.76 16 19 N -0.71 -4.80 5.31 -53.02 -0.28 -5.08 16 20 C 0.56 5.05 7.51 -10.98 -0.08 4.97 16 21 O -0.53 -6.96 16.45 5.56 0.09 -6.86 16 22 C -0.22 -1.46 2.81 -154.10 -0.43 -1.90 16 23 C -0.10 -0.61 9.84 -25.35 -0.25 -0.86 16 24 C -0.16 -1.03 7.04 -87.67 -0.62 -1.65 16 25 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 26 C 0.07 0.37 7.54 37.93 0.29 0.65 16 27 O -0.37 -2.60 11.32 -35.23 -0.40 -3.00 16 28 C 0.08 0.46 6.97 37.93 0.26 0.72 16 29 C -0.15 -1.04 7.58 -25.92 -0.20 -1.24 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 32 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 33 H 0.40 3.56 8.73 -40.82 -0.36 3.20 16 34 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.40 1.64 8.49 -40.82 -0.35 1.30 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.56 8.07 -51.92 -0.42 0.14 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -36.97 387.01 -9.43 -46.40 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.51 Total: 1.53 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.46 Total: -5.48 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.17 Total: -39.47 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.22 Total: -21.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.97 -9.43 -46.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744430104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.229 kcal (2) G-P(sol) polarization free energy of solvation -36.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds