Wall clock time and date at job start Tue Mar 31 2020 23:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47180 * 239.99670 * 3 2 1 5 5 H 1.48501 * 109.47230 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47200 * 119.99699 * 3 2 1 7 7 C 1.38797 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00490 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00184 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47150 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00028 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00242 * 179.97438 * 13 11 10 15 15 H 1.09003 * 112.84928 * 336.19918 * 14 13 11 16 16 C 1.53781 * 113.61679 * 107.49871 * 14 13 11 17 17 C 1.53775 * 87.08156 * 139.98239 * 16 14 13 18 18 H 1.09009 * 113.68767 * 89.13097 * 17 16 14 19 19 N 1.46496 * 113.61731 * 220.01955 * 17 16 14 20 20 C 1.34773 * 120.00379 * 252.49877 * 19 17 16 21 21 O 1.21278 * 119.99737 * 0.02562 * 20 19 17 22 22 C 1.50706 * 120.00267 * 179.97438 * 20 19 17 23 23 C 1.52994 * 119.80896 * 248.97834 * 22 20 19 24 24 C 1.54500 * 122.36585 * 176.59647 * 22 20 19 25 25 H 1.09004 * 122.37087 * 359.45961 * 24 22 20 26 26 C 1.54481 * 104.06452 * 223.21990 * 24 22 20 27 27 O 1.44419 * 104.80345 * 336.02342 * 26 24 22 28 28 C 1.44430 * 105.27252 * 40.51013 * 27 26 24 29 29 C 1.53774 * 113.61869 * 205.00064 * 14 13 11 30 30 H 0.96995 * 120.00248 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46735 * 60.00416 * 10 9 7 32 32 H 1.08994 * 109.47278 * 299.99898 * 10 9 7 33 33 H 0.97001 * 119.99831 * 0.02562 * 13 11 10 34 34 H 1.09008 * 113.60808 * 25.43619 * 16 14 13 35 35 H 1.09001 * 113.61800 * 254.53846 * 16 14 13 36 36 H 0.97003 * 119.99741 * 72.49776 * 19 17 16 37 37 H 1.09000 * 117.43606 * 355.36686 * 23 22 20 38 38 H 1.09007 * 117.43076 * 140.01128 * 23 22 20 39 39 H 1.09000 * 110.37363 * 217.19563 * 26 24 22 40 40 H 1.09002 * 110.46481 * 94.90253 * 26 24 22 41 41 H 1.09002 * 110.36890 * 200.65134 * 28 27 26 42 42 H 1.09001 * 110.46632 * 78.37213 * 28 27 26 43 43 H 1.08998 * 113.61831 * 105.47117 * 29 14 13 44 44 H 1.09000 * 113.69258 * 334.57722 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0021 13 7 2.8443 -6.3431 0.0018 14 6 2.3307 -7.7151 0.0030 15 1 1.3216 -7.7889 0.4086 16 6 2.5111 -8.4416 -1.3403 17 6 2.8736 -9.6938 -0.5246 18 1 2.0135 -10.3107 -0.2637 19 7 3.9764 -10.4690 -1.0983 20 6 3.7302 -11.6535 -1.6921 21 8 2.5956 -12.0775 -1.7520 22 6 4.8647 -12.4506 -2.2827 23 6 4.9704 -12.6137 -3.8003 24 6 4.6563 -13.8484 -2.9070 25 1 3.6798 -14.3315 -2.9437 26 6 5.8433 -14.6795 -2.3716 27 8 6.8604 -13.7058 -2.0506 28 6 6.1529 -12.6025 -1.4439 29 6 3.3106 -8.7393 0.5990 30 1 -0.4850 0.8400 -0.0004 31 1 3.1245 -3.7313 0.8906 32 1 3.1245 -3.7314 -0.8894 33 1 3.8011 -6.1834 0.0022 34 1 3.3370 -8.0556 -1.9379 35 1 1.5870 -8.5434 -1.9093 36 1 4.8839 -10.1296 -1.0507 37 1 4.1632 -12.2032 -4.4069 38 1 5.9648 -12.5582 -4.2433 39 1 6.2031 -15.3652 -3.1388 40 1 5.5503 -15.2308 -1.4781 41 1 6.7507 -11.6926 -1.4982 42 1 5.9061 -12.8319 -0.4073 43 1 3.0320 -9.0816 1.5957 44 1 4.3554 -8.4359 0.5325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744430104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:32 Heat of formation + Delta-G solvation = -90.064259 kcal Electronic energy + Delta-G solvation = -25856.319230 eV Core-core repulsion = 21900.538174 eV Total energy + Delta-G solvation = -3955.781056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97091 -41.16189 -40.06254 -38.89633 -35.37531 -35.30439 -34.57888 -33.72472 -30.71832 -29.83312 -27.67942 -26.93873 -26.77509 -25.85976 -23.61151 -21.86473 -21.72564 -21.37095 -20.52836 -19.75968 -18.63314 -18.11357 -17.72782 -16.93865 -16.87171 -16.81381 -16.49188 -16.35684 -16.22246 -15.99214 -15.79772 -15.30774 -14.98763 -14.63975 -14.38973 -14.03357 -13.88912 -13.79725 -13.50255 -13.38114 -13.16404 -13.06888 -12.85993 -12.69503 -12.52930 -12.41097 -12.36300 -11.99585 -11.73158 -11.65746 -11.21858 -11.12235 -10.92944 -10.85070 -10.66091 -10.26665 -10.21531 -9.98297 -8.66279 -8.33836 -6.12197 1.27531 1.33058 1.44484 1.47599 1.56882 1.60482 1.92491 2.27897 2.34853 2.40520 2.82483 3.00297 3.32053 3.34644 3.38107 3.48386 3.53414 3.68230 3.80372 3.86407 3.88567 4.00844 4.09498 4.32805 4.42903 4.52043 4.55067 4.61847 4.62985 4.65635 4.67903 4.69635 4.74396 4.79524 4.86959 4.97916 5.03187 5.06854 5.40544 5.42186 5.57501 5.63789 6.20142 6.44419 6.54335 7.07321 7.12895 7.27317 8.75077 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030259 B = 0.001609 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.108130 B =17403.114411 C =17774.407136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.568 6.568 13 N -0.697 5.697 14 C 0.117 3.883 15 H 0.093 0.907 16 C -0.161 4.161 17 C 0.128 3.872 18 H 0.101 0.899 19 N -0.694 5.694 20 C 0.560 3.440 21 O -0.581 6.581 22 C -0.220 4.220 23 C -0.096 4.096 24 C -0.170 4.170 25 H 0.125 0.875 26 C 0.070 3.930 27 O -0.382 6.382 28 C 0.086 3.914 29 C -0.124 4.124 30 H 0.271 0.729 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.419 0.581 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.419 0.581 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.122 0.878 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.611 -28.348 -3.086 34.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.446 6.446 13 N -0.351 5.351 14 C 0.011 3.989 15 H 0.111 0.889 16 C -0.202 4.202 17 C 0.022 3.978 18 H 0.119 0.881 19 N -0.345 5.345 20 C 0.347 3.653 21 O -0.461 6.461 22 C -0.224 4.224 23 C -0.133 4.133 24 C -0.189 4.189 25 H 0.143 0.857 26 C -0.006 4.006 27 O -0.301 6.301 28 C 0.010 3.990 29 C -0.163 4.163 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.257 0.743 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.140 0.860 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.927 -28.909 -3.120 33.645 hybrid contribution 1.349 1.564 0.001 2.066 sum 18.276 -27.345 -3.119 33.038 Atomic orbital electron populations 1.70179 1.08019 1.28652 1.47975 1.26135 0.95947 1.03361 0.93742 0.85003 0.77790 0.75672 0.79524 1.18644 1.20536 1.18565 1.23183 0.95388 0.91965 1.58922 0.89753 1.85630 1.10803 0.99391 1.97068 1.23381 1.03457 0.94278 1.06938 1.20137 0.86315 0.86847 0.74723 1.90700 1.17672 1.86101 1.50156 1.45621 1.10126 1.04296 1.75023 1.22256 0.99445 0.79749 0.97478 0.88929 1.23984 1.02612 0.95942 0.97622 1.22133 0.90971 0.90241 0.94409 0.88125 1.45701 1.11601 1.19584 1.57575 1.19471 0.88119 0.81033 0.76683 1.90718 1.24743 1.71138 1.59506 1.23210 0.97972 1.03065 0.98108 1.23357 1.04702 0.97059 0.88186 1.24685 1.01838 0.88732 1.03623 0.85743 1.23118 0.85620 0.91248 1.00612 1.89176 1.30515 1.29724 1.80657 1.22938 0.89242 0.91733 0.95122 1.23654 1.01159 0.92669 0.98819 0.92035 0.86944 0.87104 0.74253 0.87734 0.92761 0.74293 0.87666 0.85946 0.86548 0.90227 0.85984 0.90423 0.88746 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 2 C 0.01 0.73 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.09 29.55 68.60 2.03 45.11 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.55 -30.86 9.50 67.95 0.65 -30.21 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 11 C 0.53 18.77 7.85 87.66 0.69 19.46 16 12 O -0.57 -26.00 15.46 -3.05 -0.05 -26.04 16 13 N -0.70 -15.32 5.35 -440.05 -2.36 -17.68 16 14 C 0.12 2.30 4.24 45.52 0.19 2.49 16 15 H 0.09 2.40 7.46 -2.39 -0.02 2.39 16 16 C -0.16 -2.91 7.68 31.12 0.24 -2.67 16 17 C 0.13 1.86 4.24 45.52 0.19 2.05 16 18 H 0.10 1.94 7.47 -2.38 -0.02 1.92 16 19 N -0.69 -7.78 5.31 -440.05 -2.34 -10.11 16 20 C 0.56 9.50 7.51 87.66 0.66 10.16 16 21 O -0.58 -15.45 16.45 -3.02 -0.05 -15.50 16 22 C -0.22 -2.61 2.81 -51.92 -0.15 -2.75 16 23 C -0.10 -1.02 9.84 31.49 0.31 -0.71 16 24 C -0.17 -2.00 7.04 -8.89 -0.06 -2.07 16 25 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 26 C 0.07 0.63 7.54 72.49 0.55 1.18 16 27 O -0.38 -4.50 11.32 -148.98 -1.69 -6.19 16 28 C 0.09 0.71 6.97 72.48 0.51 1.21 16 29 C -0.12 -1.30 7.58 31.12 0.24 -1.06 16 30 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 32 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 33 H 0.42 5.77 8.73 -92.71 -0.81 4.96 16 34 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 1.82 8.49 -92.71 -0.79 1.03 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.12 1.00 8.07 -2.38 -0.02 0.98 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.13 0.53 8.10 -2.39 -0.02 0.52 16 Total: -1.00 -84.98 387.01 -0.97 -85.96 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.56 Total: 16.05 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 4.91 Total: -6.20 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -4.41 Total: -83.44 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -1.78 Total: -47.74 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -84.98 -0.97 -85.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744430104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.109 kcal (2) G-P(sol) polarization free energy of solvation -84.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds