Wall clock time and date at job start Tue Mar 31 2020 23:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47327 * 239.99613 * 3 2 1 5 5 H 1.48504 * 109.47421 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47095 * 119.99663 * 3 2 1 7 7 C 1.38793 * 119.99444 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99600 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00565 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99988 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46747 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00189 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99540 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99705 * 179.97438 * 13 11 10 15 15 H 1.08994 * 115.51577 * 9.58469 * 14 13 11 16 16 C 1.53005 * 117.40514 * 224.22631 * 14 13 11 17 17 H 1.08998 * 119.53793 * 4.10976 * 16 14 13 18 18 C 1.54793 * 117.93325 * 160.74179 * 16 14 13 19 19 N 1.48144 * 104.41907 * 87.46639 * 18 16 14 20 20 C 1.34779 * 127.84005 * 140.35742 * 19 18 16 21 21 O 1.21276 * 120.00130 * 179.68196 * 20 19 18 22 22 C 1.50700 * 119.99823 * 359.69144 * 20 19 18 23 23 H 1.09000 * 110.54401 * 61.15059 * 22 20 19 24 24 C 1.54810 * 110.49004 * 183.77503 * 22 20 19 25 25 C 1.54991 * 102.09350 * 139.55527 * 24 22 20 26 26 O 1.44378 * 103.49061 * 322.97120 * 25 24 22 27 27 C 1.43745 * 106.97348 * 40.06796 * 26 25 24 28 28 C 1.48146 * 104.32509 * 320.10681 * 19 18 16 29 29 C 1.53000 * 117.44126 * 155.00361 * 14 13 11 30 30 H 1.09000 * 119.53851 * 354.23938 * 29 14 13 31 31 H 0.97003 * 119.99987 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.47428 * 60.00003 * 10 9 7 33 33 H 1.09004 * 109.47423 * 299.99595 * 10 9 7 34 34 H 0.97001 * 120.00370 * 359.97438 * 13 11 10 35 35 H 1.08997 * 110.54490 * 328.72461 * 18 16 14 36 36 H 1.09002 * 110.45603 * 206.16563 * 18 16 14 37 37 H 1.09005 * 110.90592 * 257.75502 * 24 22 20 38 38 H 1.09005 * 110.90412 * 21.35566 * 24 22 20 39 39 H 1.08993 * 110.62131 * 81.47823 * 25 24 22 40 40 H 1.09002 * 110.61455 * 204.47595 * 25 24 22 41 41 H 1.09004 * 109.88020 * 214.06063 * 27 26 25 42 42 H 1.09000 * 109.88175 * 92.90294 * 27 26 25 43 43 H 1.08991 * 110.41133 * 158.62851 * 28 19 18 44 44 H 1.09001 * 110.40361 * 281.06557 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8914 0.0021 11 6 1.9872 -5.3027 0.0017 12 8 0.7909 -5.5022 0.0009 13 7 2.8440 -6.3431 0.0022 14 6 2.3302 -7.7151 0.0024 15 1 1.2573 -7.8147 -0.1617 16 6 2.9944 -8.7158 0.9502 17 1 3.7699 -8.3735 1.6355 18 6 2.2139 -10.0037 1.3081 19 7 2.5707 -10.9613 0.2355 20 6 2.8195 -12.2806 0.3542 21 8 3.0956 -12.9364 -0.6279 22 6 2.7545 -12.9409 1.7073 23 1 1.7533 -12.8515 2.1288 24 6 3.1682 -14.4292 1.6044 25 6 4.0232 -14.6176 2.8834 26 8 4.7280 -13.3635 3.0053 27 6 3.7975 -12.3239 2.6592 28 6 2.5860 -10.1411 -0.9980 29 6 3.2356 -8.8071 -0.5709 30 1 4.1787 -8.5307 -1.0422 31 1 -0.4850 0.8401 -0.0004 32 1 3.1237 -3.7310 0.8925 33 1 3.1251 -3.7318 -0.8875 34 1 3.8008 -6.1835 0.0025 35 1 1.1406 -9.8135 1.3062 36 1 2.5316 -10.3844 2.2787 37 1 2.2928 -15.0784 1.6225 38 1 3.7638 -14.6063 0.7088 39 1 3.3846 -14.7850 3.7508 40 1 4.7253 -15.4418 2.7577 41 1 4.3210 -11.5097 2.1579 42 1 3.3052 -11.9528 3.5581 43 1 3.1847 -10.6255 -1.7693 44 1 1.5699 -9.9720 -1.3545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744556197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:13 Heat of formation + Delta-G solvation = -73.351855 kcal Electronic energy + Delta-G solvation = -26205.876693 eV Core-core repulsion = 22250.820342 eV Total energy + Delta-G solvation = -3955.056352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25701 -40.05045 -38.95644 -38.15031 -34.95031 -33.00630 -32.47528 -32.34576 -30.14247 -29.19135 -28.70312 -26.26218 -25.50836 -23.67027 -22.55447 -21.67774 -20.77411 -20.51444 -19.66617 -17.93667 -17.77262 -17.23759 -16.87376 -16.55704 -16.49633 -15.76032 -15.38828 -15.09653 -14.99906 -14.84420 -14.34446 -14.07215 -13.86474 -13.56664 -13.34361 -13.11631 -13.02003 -12.87532 -12.58114 -12.48778 -12.26829 -11.99937 -11.92730 -11.87883 -11.44548 -11.12173 -11.09604 -11.06416 -10.82210 -10.68519 -10.35541 -10.00541 -9.87272 -9.59652 -9.21515 -9.10448 -8.87936 -8.31261 -6.56078 -6.26058 -3.97501 2.11212 2.36755 2.73924 2.81205 3.20623 3.22445 3.26285 3.30125 3.38977 3.51860 3.78536 3.99621 4.15933 4.23918 4.28362 4.34916 4.37572 4.53242 4.60569 4.69076 4.74736 4.76293 4.95009 4.98781 5.06151 5.09297 5.10215 5.14943 5.23291 5.32082 5.38616 5.40787 5.54128 5.59062 5.65527 5.71809 5.78337 5.79153 6.04935 6.28545 6.42363 7.04756 7.49304 7.55144 7.66496 8.30407 8.42205 9.19274 10.81268 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.033658 B = 0.001692 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.702002 B =16540.803085 C =16832.354624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.539 3.461 12 O -0.511 6.511 13 N -0.710 5.710 14 C 0.136 3.864 15 H 0.140 0.860 16 C -0.190 4.190 17 H 0.126 0.874 18 C 0.125 3.875 19 N -0.623 5.623 20 C 0.547 3.453 21 O -0.534 6.534 22 C -0.144 4.144 23 H 0.113 0.887 24 C -0.141 4.141 25 C 0.045 3.955 26 O -0.373 6.373 27 C 0.057 3.943 28 C 0.135 3.865 29 C -0.186 4.186 30 H 0.126 0.874 31 H 0.269 0.731 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.402 0.598 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 -26.921 5.023 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.361 5.361 14 C 0.028 3.972 15 H 0.157 0.843 16 C -0.211 4.211 17 H 0.144 0.856 18 C 0.002 3.998 19 N -0.357 5.357 20 C 0.336 3.664 21 O -0.410 6.410 22 C -0.166 4.166 23 H 0.131 0.869 24 C -0.179 4.179 25 C -0.031 4.031 26 O -0.292 6.292 27 C -0.020 4.020 28 C 0.012 3.988 29 C -0.207 4.207 30 H 0.143 0.857 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.195 -27.562 4.560 28.616 hybrid contribution 2.284 1.476 0.011 2.719 sum 8.479 -26.086 4.572 27.808 Atomic orbital electron populations 1.70004 1.05953 1.27647 1.46626 1.24990 0.95038 0.99044 0.94446 0.86217 0.79240 0.81186 0.78817 1.19920 1.20779 1.19929 1.22821 0.94890 0.91599 1.59282 0.90920 1.85406 1.04611 0.96316 1.96751 1.23541 1.06843 0.94907 1.05162 1.20378 0.86440 0.86115 0.74518 1.90707 1.15312 1.85425 1.46953 1.45392 1.10047 1.03744 1.76962 1.21549 0.98119 0.78951 0.98607 0.84258 1.24301 1.04658 0.98714 0.93401 0.85608 1.22027 0.99651 0.86836 0.91250 1.49243 1.69126 1.07253 1.10084 1.19888 0.75903 0.79898 0.90748 1.90715 1.48181 1.62375 1.39712 1.22743 1.02503 0.97260 0.94063 0.86931 1.23146 1.01345 0.93093 1.00286 1.23634 0.95556 0.87541 0.96381 1.88922 1.35257 1.15324 1.89686 1.23219 0.90272 0.91615 0.96943 1.21738 1.01382 0.88158 0.87497 1.24135 1.03048 0.96905 0.96585 0.85653 0.92072 0.88987 0.88988 0.76376 0.89706 0.89402 0.89479 0.88443 0.91784 0.88441 0.89297 0.91043 0.89082 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.64 13.22 55.49 0.73 -24.90 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 11 C 0.54 9.18 7.85 -10.98 -0.09 9.09 16 12 O -0.51 -10.73 15.43 5.56 0.09 -10.65 16 13 N -0.71 -8.27 5.56 -53.80 -0.30 -8.57 16 14 C 0.14 1.35 5.97 -67.93 -0.41 0.95 16 15 H 0.14 1.61 7.40 -51.93 -0.38 1.23 16 16 C -0.19 -1.41 7.08 -89.00 -0.63 -2.04 16 17 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 18 C 0.13 0.81 6.34 -2.19 -0.01 0.79 16 19 N -0.62 -5.18 3.23 -169.06 -0.55 -5.72 16 20 C 0.55 5.30 7.09 -10.98 -0.08 5.22 16 21 O -0.53 -7.13 15.73 5.56 0.09 -7.05 16 22 C -0.14 -0.97 2.94 -90.24 -0.27 -1.23 16 23 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 24 C -0.14 -0.93 6.50 -24.73 -0.16 -1.09 16 25 C 0.05 0.27 7.72 38.21 0.29 0.57 16 26 O -0.37 -3.29 11.52 -35.23 -0.41 -3.70 16 27 C 0.06 0.38 5.62 37.74 0.21 0.59 16 28 C 0.13 1.13 6.85 -2.41 -0.02 1.12 16 29 C -0.19 -1.46 7.05 -89.22 -0.63 -2.09 16 30 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 33 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 34 H 0.40 3.54 8.83 -40.82 -0.36 3.18 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.41 5.52 -51.93 -0.29 0.13 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.86 6.93 -51.93 -0.36 0.50 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.64 7.04 -51.93 -0.37 0.28 16 42 H 0.07 0.34 7.92 -51.93 -0.41 -0.07 16 43 H 0.09 0.83 7.88 -51.93 -0.41 0.42 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -36.04 377.34 -9.60 -45.64 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.35 Total: 0.48 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.36 Total: -3.45 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.11 Total: -39.20 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.23 Total: -21.39 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.04 -9.60 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744556197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.707 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds