Wall clock time and date at job start Tue Mar 31 2020 23:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48500 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47085 * 299.99917 * 3 2 1 6 6 H 1.48497 * 109.47100 * 59.99789 * 3 2 1 7 7 C 1.38800 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99794 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00346 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00131 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47210 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99607 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00100 * 180.02562 * 11 10 9 14 14 C 1.47581 * 134.49354 * 179.97438 * 13 11 10 15 15 C 1.53950 * 86.11751 * 155.35178 * 14 13 11 16 16 C 1.52992 * 113.74144 * 137.95167 * 15 14 13 17 17 N 1.46499 * 109.47267 * 176.92783 * 16 15 14 18 18 C 1.34784 * 119.99971 * 180.02562 * 17 16 15 19 19 O 1.21605 * 119.99806 * 359.72704 * 18 17 16 20 20 C 1.47099 * 119.99647 * 179.97438 * 18 17 16 21 21 C 1.32093 * 118.87178 * 179.73272 * 20 18 17 22 22 C 1.50265 * 122.57586 * 180.14988 * 21 20 18 23 23 O 1.42899 * 110.14589 * 344.80113 * 22 21 20 24 24 C 1.43266 * 113.09863 * 50.32976 * 23 22 21 25 25 C 1.50412 * 118.88106 * 0.02562 * 20 18 17 26 26 C 1.47812 * 134.45603 * 359.85826 * 13 11 10 27 27 H 0.96993 * 119.99825 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46927 * 60.00153 * 10 9 7 29 29 H 1.09000 * 109.46779 * 299.99729 * 10 9 7 30 30 H 1.08998 * 113.76700 * 41.05784 * 14 13 11 31 31 H 1.08994 * 113.76896 * 269.65687 * 14 13 11 32 32 H 1.08997 * 113.74146 * 269.15894 * 15 14 13 33 33 H 1.09004 * 109.47330 * 56.92686 * 16 15 14 34 34 H 1.09005 * 109.47124 * 296.92890 * 16 15 14 35 35 H 0.96999 * 119.99984 * 359.97438 * 17 16 15 36 36 H 1.07994 * 118.71039 * 0.36676 * 21 20 18 37 37 H 1.08997 * 109.49816 * 224.49430 * 22 21 20 38 38 H 1.09004 * 109.08370 * 104.83947 * 22 21 20 39 39 H 1.09009 * 109.63652 * 171.47446 * 24 23 22 40 40 H 1.08996 * 109.64112 * 50.86309 * 24 23 22 41 41 H 1.09000 * 109.45231 * 283.35163 * 25 20 18 42 42 H 1.09004 * 109.45487 * 43.28409 * 25 20 18 43 43 H 1.08991 * 113.77048 * 90.38375 * 26 13 11 44 44 H 1.09002 * 113.83635 * 318.92166 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3028 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3432 0.0003 14 6 2.6889 -7.8108 0.0004 15 6 4.0884 -7.8540 -0.6397 16 6 4.9915 -8.9509 -0.0724 17 7 6.2664 -8.9555 -0.7940 18 6 7.2244 -9.8443 -0.4640 19 8 7.0323 -10.6391 0.4361 20 6 8.5043 -9.8493 -1.1890 21 6 9.4296 -10.7264 -0.8436 22 6 10.7667 -10.8027 -1.5251 23 8 10.7332 -10.0792 -2.7570 24 6 10.2108 -8.7527 -2.6157 25 6 8.7173 -8.8510 -2.2938 26 6 4.3166 -6.4717 -0.0013 27 1 -0.4849 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 1.8949 -8.1686 -0.6551 31 1 2.6483 -8.2482 0.9979 32 1 4.0732 -7.8373 -1.7294 33 1 4.5045 -9.9191 -0.1890 34 1 5.1735 -8.7608 0.9854 35 1 6.4209 -8.3194 -1.5099 36 1 9.2155 -11.4180 -0.0423 37 1 11.0142 -11.8452 -1.7248 38 1 11.5247 -10.3698 -0.8723 39 1 10.3496 -8.2032 -3.5469 40 1 10.7272 -8.2401 -1.8041 41 1 8.1750 -9.1725 -3.1830 42 1 8.3489 -7.8752 -1.9774 43 1 4.7549 -6.5151 0.9957 44 1 4.8200 -5.7621 -0.6580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745966791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:42 Heat of formation + Delta-G solvation = -66.247580 kcal Electronic energy + Delta-G solvation = -25775.031679 eV Core-core repulsion = 21820.283391 eV Total energy + Delta-G solvation = -3954.748287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82666 -40.19508 -39.11880 -37.64285 -35.10164 -34.26586 -32.46360 -31.73283 -30.99820 -29.08343 -26.96829 -26.37481 -25.68074 -25.30707 -24.18841 -21.75328 -21.23576 -19.14065 -18.92504 -18.13781 -17.71969 -17.08472 -16.73613 -16.33956 -16.09948 -15.96994 -15.59834 -15.26622 -15.14837 -14.83760 -14.51923 -14.16309 -14.09442 -13.82561 -13.56706 -13.24685 -13.09460 -13.00017 -12.88516 -12.52572 -12.22828 -12.15866 -11.93191 -11.63437 -11.40983 -11.14905 -11.09941 -11.04597 -10.79118 -10.67313 -10.08107 -9.84614 -9.72769 -9.48770 -9.39754 -9.10825 -8.66524 -8.27217 -6.54304 -6.25079 -3.96123 0.81500 2.63139 2.71002 2.79745 3.01642 3.18843 3.21159 3.27903 3.29093 3.50780 3.92959 4.07924 4.12906 4.16621 4.25926 4.39138 4.52732 4.61001 4.66532 4.73951 4.78545 4.91371 4.94843 5.01241 5.10123 5.12643 5.20337 5.22572 5.28977 5.30342 5.36978 5.45271 5.54312 5.71214 5.78098 5.86724 5.88792 5.96489 6.00849 6.09296 6.47559 7.03341 7.56334 7.74891 7.76898 8.31907 8.49384 9.20174 10.82440 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.001869 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.775293 B =14977.132561 C =16549.913067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.145 4.145 11 C 0.556 3.444 12 O -0.514 6.514 13 N -0.652 5.652 14 C 0.120 3.880 15 C -0.139 4.139 16 C 0.128 3.872 17 N -0.724 5.724 18 C 0.552 3.448 19 O -0.542 6.542 20 C -0.170 4.170 21 C -0.111 4.111 22 C 0.083 3.917 23 O -0.377 6.377 24 C 0.059 3.941 25 C -0.121 4.121 26 C 0.107 3.893 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.523 -21.378 -4.379 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.295 4.295 11 C 0.345 3.655 12 O -0.387 6.387 13 N -0.391 5.391 14 C -0.004 4.004 15 C -0.158 4.158 16 C 0.004 3.996 17 N -0.375 5.375 18 C 0.340 3.660 19 O -0.420 6.420 20 C -0.173 4.173 21 C -0.131 4.131 22 C 0.007 3.993 23 O -0.295 6.295 24 C -0.018 4.018 25 C -0.158 4.158 26 C -0.016 4.016 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.238 0.762 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 20.298 -21.997 -3.901 30.185 hybrid contribution 1.832 1.755 0.041 2.537 sum 22.131 -20.243 -3.861 30.240 Atomic orbital electron populations 1.70028 1.05954 1.27396 1.46828 1.25006 0.95047 0.99064 0.94515 0.86102 0.79540 0.81822 0.77939 1.19630 1.20527 1.20537 1.22890 0.94908 0.91557 1.58973 0.90887 1.85426 1.04897 0.96381 1.96713 1.23470 1.06498 0.94809 1.04754 1.20058 0.85503 0.85217 0.74705 1.90720 1.14867 1.84983 1.48180 1.50023 1.07278 1.05778 1.76044 1.22985 0.95676 0.80949 1.00760 1.23481 0.95985 0.94578 1.01786 1.21367 0.82679 0.99012 0.96510 1.45904 1.15862 1.36926 1.38856 1.18399 0.84018 0.80475 0.83077 1.90805 1.80720 1.39504 1.30979 1.20851 0.95011 1.01036 1.00371 1.23758 0.94835 0.96091 0.98367 1.21627 0.93357 0.98349 0.85974 1.88158 1.84308 1.26594 1.30439 1.22673 0.91949 0.84330 1.02843 1.21097 0.98949 0.98406 0.97394 1.23314 0.82287 0.95159 1.00849 0.92193 0.89368 0.89380 0.89642 0.89643 0.87218 0.90533 0.90558 0.76193 0.84574 0.86811 0.90723 0.87805 0.92301 0.89213 0.89423 0.89547 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.88 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.14 -2.95 5.91 36.01 0.21 -2.74 16 11 C 0.56 10.68 8.08 -10.99 -0.09 10.59 16 12 O -0.51 -12.04 16.59 5.55 0.09 -11.95 16 13 N -0.65 -8.86 3.61 -178.13 -0.64 -9.50 16 14 C 0.12 1.19 8.41 -2.96 -0.02 1.17 16 15 C -0.14 -0.96 3.93 -89.68 -0.35 -1.31 16 16 C 0.13 0.87 5.51 -4.05 -0.02 0.85 16 17 N -0.72 -4.65 5.50 -61.49 -0.34 -4.99 16 18 C 0.55 4.92 7.73 -12.66 -0.10 4.82 16 19 O -0.54 -6.87 16.06 5.27 0.08 -6.78 16 20 C -0.17 -1.17 5.86 -103.09 -0.60 -1.78 16 21 C -0.11 -0.72 9.58 -36.44 -0.35 -1.07 16 22 C 0.08 0.41 7.04 35.79 0.25 0.66 16 23 O -0.38 -2.52 10.83 -35.23 -0.38 -2.91 16 24 C 0.06 0.27 6.88 37.21 0.26 0.52 16 25 C -0.12 -0.54 5.29 -27.97 -0.15 -0.69 16 26 C 0.11 0.94 8.19 -2.83 -0.02 0.92 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.57 7.88 -51.93 -0.41 0.16 16 35 H 0.40 1.65 6.78 -40.82 -0.28 1.37 16 36 H 0.14 0.96 7.29 -52.49 -0.38 0.58 16 37 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.06 0.23 8.09 -51.93 -0.42 -0.19 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.25 7.31 -51.93 -0.38 -0.13 16 43 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -38.40 385.54 -9.14 -47.54 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -6.47 Total: -3.27 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.79 Total: -0.98 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.25 Total: -39.81 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.20 Total: -21.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.40 -9.14 -47.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745966791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.710 kcal (2) G-P(sol) polarization free energy of solvation -38.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds