Wall clock time and date at job start Wed Apr 1 2020 00:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99930 * 2 1 4 4 C 1.53002 * 109.47179 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47434 * 64.99456 * 4 3 2 6 6 C 1.36937 * 120.00223 * 274.40251 * 5 4 3 7 7 H 1.08001 * 119.99812 * 145.90916 * 6 5 4 8 8 C 1.38813 * 119.99724 * 325.90286 * 6 5 4 9 9 N 1.31617 * 120.00262 * 335.49267 * 8 6 5 10 10 Si 1.86806 * 119.99690 * 155.48435 * 8 6 5 11 11 H 1.48496 * 109.47091 * 60.00244 * 10 8 6 12 12 H 1.48502 * 109.46808 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.46999 * 300.00108 * 10 8 6 14 14 C 1.46503 * 119.99830 * 94.39784 * 5 4 3 15 15 C 1.53001 * 109.47335 * 270.00067 * 14 5 4 16 16 N 1.46494 * 109.47282 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00067 * 179.97438 * 16 15 14 18 18 O 1.21563 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.47772 * 119.99990 * 179.97438 * 17 16 15 20 20 C 1.39625 * 120.15605 * 0.29757 * 19 17 16 21 21 C 1.37890 * 119.86273 * 180.24871 * 20 19 17 22 22 C 1.38424 * 120.18374 * 359.45447 * 21 20 19 23 23 C 1.38257 * 120.31632 * 0.27581 * 22 21 20 24 24 C 1.50701 * 119.93395 * 179.97438 * 23 22 21 25 25 C 1.38160 * 120.13091 * 359.97438 * 23 22 21 26 26 Cl 1.73606 * 120.09068 * 180.02562 * 25 23 22 27 27 H 1.08995 * 109.47485 * 59.99864 * 1 2 3 28 28 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46754 * 300.00171 * 1 2 3 30 30 H 1.08998 * 109.47730 * 60.00267 * 3 2 1 31 31 H 1.09007 * 109.47170 * 299.99726 * 3 2 1 32 32 H 1.09007 * 109.47036 * 304.99453 * 4 3 2 33 33 H 1.09001 * 109.47507 * 184.99974 * 4 3 2 34 34 H 0.96998 * 120.00177 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47188 * 150.00142 * 14 5 4 36 36 H 1.08997 * 109.47299 * 30.00092 * 14 5 4 37 37 H 1.09005 * 109.46922 * 59.99912 * 15 14 5 38 38 H 1.09000 * 109.47386 * 300.00488 * 15 14 5 39 39 H 0.97004 * 120.00254 * 0.02562 * 16 15 14 40 40 H 1.08001 * 120.06897 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.90650 * 179.72683 * 21 20 19 42 42 H 1.08004 * 119.84210 * 180.29833 * 22 21 20 43 43 H 1.08995 * 109.47446 * 89.99670 * 24 23 22 44 44 H 1.09005 * 109.47254 * 209.99579 * 24 23 22 45 45 H 1.09002 * 109.47021 * 329.99547 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.0105 -0.7999 -1.3657 7 1 3.7874 -1.2691 -2.3125 8 6 4.3327 -1.5796 -0.2633 9 7 5.0512 -1.0710 0.7152 10 14 3.7463 -3.3507 -0.1686 11 1 4.2907 -4.1146 -1.3197 12 1 4.2194 -3.9615 1.0997 13 1 2.2623 -3.3836 -0.2099 14 6 4.3786 1.4036 -2.3838 15 6 3.1589 1.7008 -3.2584 16 7 3.5617 2.5405 -4.3892 17 6 2.6467 2.9303 -5.2988 18 8 1.4870 2.5855 -5.1805 19 6 3.0529 3.7778 -6.4391 20 6 4.3850 4.1715 -6.5809 21 6 4.7565 4.9666 -7.6444 22 6 3.8148 5.3657 -8.5773 23 6 2.4948 4.9756 -8.4473 24 6 1.4767 5.4155 -9.4676 25 6 2.1073 4.1832 -7.3839 26 17 0.4497 3.6934 -7.2221 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.2766 -1.6160 1.4853 35 1 5.1306 0.8805 -2.9747 36 1 4.7955 2.3394 -2.0116 37 1 2.4070 2.2240 -2.6675 38 1 2.7420 0.7650 -3.6306 39 1 4.4872 2.8154 -4.4838 40 1 5.1221 3.8577 -5.8566 41 1 5.7858 5.2753 -7.7523 42 1 4.1128 5.9845 -9.4108 43 1 1.4252 4.6798 -10.2702 44 1 0.4999 5.5030 -8.9918 45 1 1.7685 6.3819 -9.8787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755840578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:36 Heat of formation + Delta-G solvation = -30.794453 kcal Electronic energy + Delta-G solvation = -27219.257481 eV Core-core repulsion = 23264.002851 eV Total energy + Delta-G solvation = -3955.254631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.29488 -38.58654 -37.21020 -36.45533 -35.71257 -34.22863 -33.19526 -31.46659 -31.08517 -29.38328 -27.65365 -27.02386 -25.57628 -24.49153 -23.40107 -22.14479 -21.65561 -20.51520 -19.92728 -17.82705 -16.79461 -16.49340 -16.24386 -15.69963 -15.23499 -15.11130 -14.97098 -14.74340 -14.47072 -14.31341 -14.08283 -13.92336 -13.57626 -13.31571 -13.16579 -12.74588 -12.69805 -12.36234 -12.04380 -11.91653 -11.80531 -11.75894 -11.60008 -11.15597 -10.99162 -10.82459 -10.71137 -10.62597 -10.52156 -10.00504 -9.95104 -9.68765 -9.40711 -9.22110 -8.92397 -8.78188 -8.58334 -8.36782 -6.60545 -5.70179 -3.23365 0.53095 0.85965 2.07883 2.80127 3.30823 3.49132 3.53630 3.60693 3.62664 4.33292 4.43173 4.57191 4.64652 4.78371 4.85824 4.86239 5.17221 5.25000 5.28983 5.36309 5.40473 5.56655 5.73303 5.76464 5.80662 5.84499 5.88351 5.93452 5.96806 6.02532 6.13266 6.21211 6.31682 6.33329 6.38720 6.59199 6.66194 6.69560 6.71333 6.95097 7.68665 7.71947 7.90713 8.15862 8.40573 8.58255 9.23235 9.89344 10.39923 11.31466 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.002655 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.710127 B =10541.791859 C =11226.632271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.058 0.942 8 C 0.024 3.976 9 N -0.891 5.891 10 Si 0.898 3.102 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.138 3.862 15 C 0.097 3.903 16 N -0.718 5.718 17 C 0.544 3.456 18 O -0.518 6.518 19 C -0.119 4.119 20 C -0.082 4.082 21 C -0.120 4.120 22 C -0.090 4.090 23 C -0.089 4.089 24 C -0.119 4.119 25 C 0.009 3.991 26 Cl -0.029 7.029 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.029 0.971 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.253 0.747 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.394 0.606 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 15.568 -16.426 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C -0.033 4.033 4 C 0.011 3.989 5 N -0.290 5.290 6 C -0.375 4.375 7 H 0.076 0.924 8 C -0.176 4.176 9 N -0.534 5.534 10 Si 0.728 3.272 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.010 3.990 15 C -0.029 4.029 16 N -0.370 5.370 17 C 0.330 3.670 18 O -0.394 6.394 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.109 4.109 23 C -0.090 4.090 24 C -0.175 4.175 25 C -0.019 4.019 26 Cl 0.000 7.000 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.229 0.771 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.939 14.976 -16.107 22.189 hybrid contribution -0.339 -0.532 0.100 0.639 sum -3.278 14.444 -16.006 21.808 Atomic orbital electron populations 1.22632 0.84359 1.01424 0.98404 1.88238 1.16435 1.27371 1.94790 1.23457 0.98646 0.84355 0.96867 1.21159 0.87921 0.96524 0.93342 1.43572 1.74122 1.02375 1.08897 1.18787 1.40889 0.80721 0.97151 0.92439 1.24879 0.96765 0.97688 0.98277 1.69958 1.36096 1.36827 1.10476 0.86464 0.79541 0.84750 0.76491 1.21213 1.22022 1.20590 1.21002 0.92751 0.94763 0.90497 1.22508 1.00690 0.93659 0.85995 1.46036 1.11467 1.52880 1.26585 1.18087 0.85993 0.80701 0.82253 1.90867 1.17695 1.55548 1.75289 1.19959 0.93678 1.01680 0.96977 1.21339 0.94201 0.96458 0.98128 1.21177 1.00161 0.98076 0.94440 1.21173 0.91625 0.99043 0.99029 1.19780 0.95701 0.97815 0.95706 1.20879 0.97784 1.01643 0.97239 1.20940 0.87367 0.98162 0.95475 1.98410 1.14832 1.89527 1.97189 0.95180 0.90820 0.95651 0.95897 0.95293 0.87498 0.94123 0.93690 0.92676 0.94337 0.92219 0.91416 0.77134 0.84594 0.84749 0.84831 0.90511 0.90658 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -8.12 9.97 -35.23 -0.35 -8.47 16 3 C 0.05 0.96 6.28 37.16 0.23 1.20 16 4 C 0.14 3.15 5.83 -4.04 -0.02 3.13 16 5 N -0.57 -13.67 2.45 -173.23 -0.42 -14.10 16 6 C -0.25 -6.68 8.75 -15.06 -0.13 -6.81 16 7 H 0.06 1.59 7.94 -52.49 -0.42 1.17 16 8 C 0.02 0.66 4.95 -17.43 -0.09 0.57 16 9 N -0.89 -25.49 11.37 55.49 0.63 -24.85 16 10 Si 0.90 22.49 29.62 -169.99 -5.03 17.46 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 14 C 0.14 2.67 5.82 -4.04 -0.02 2.65 16 15 C 0.10 1.77 6.00 -4.04 -0.02 1.75 16 16 N -0.72 -10.61 5.51 -61.27 -0.34 -10.95 16 17 C 0.54 8.70 7.77 -12.36 -0.10 8.60 16 18 O -0.52 -10.09 13.97 5.31 0.07 -10.02 16 19 C -0.12 -1.53 5.88 -104.94 -0.62 -2.15 16 20 C -0.08 -0.78 9.54 -39.19 -0.37 -1.15 16 21 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 22 C -0.09 -0.69 9.69 -39.51 -0.38 -1.07 16 23 C -0.09 -0.85 5.88 -104.64 -0.62 -1.47 16 24 C -0.12 -0.86 9.61 36.01 0.35 -0.51 16 25 C 0.01 0.11 6.35 -39.07 -0.25 -0.14 16 26 Cl -0.03 -0.41 24.36 -51.86 -1.26 -1.67 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.59 6.46 -51.92 -0.34 0.26 16 32 H 0.11 2.84 5.38 -51.92 -0.28 2.56 16 33 H 0.04 0.84 7.84 -51.93 -0.41 0.43 16 34 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 36 H 0.04 0.67 7.86 -51.93 -0.41 0.27 16 37 H 0.06 1.17 6.46 -51.93 -0.34 0.84 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.39 4.53 6.51 -40.82 -0.27 4.26 16 40 H 0.14 1.00 6.41 -52.49 -0.34 0.66 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.59 6.90 -51.93 -0.36 0.24 16 45 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -32.98 383.09 -8.76 -41.74 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.50 Total: 0.16 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.33 Total: 4.93 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.13 Total: -49.90 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.28 Total: -18.49 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.26 Total: -1.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.98 -8.76 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755840578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.945 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds