Wall clock time and date at job start Wed Apr 1 2020 00:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99930 * 2 1 4 4 C 1.53002 * 109.47179 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47434 * 64.99456 * 4 3 2 6 6 C 1.36937 * 120.00223 * 274.40251 * 5 4 3 7 7 H 1.08001 * 119.99812 * 145.90916 * 6 5 4 8 8 C 1.38813 * 119.99724 * 325.90286 * 6 5 4 9 9 N 1.31617 * 120.00262 * 335.49267 * 8 6 5 10 10 Si 1.86806 * 119.99690 * 155.48435 * 8 6 5 11 11 H 1.48496 * 109.47091 * 60.00244 * 10 8 6 12 12 H 1.48502 * 109.46808 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.46999 * 300.00108 * 10 8 6 14 14 C 1.46503 * 119.99830 * 94.39784 * 5 4 3 15 15 C 1.53001 * 109.47335 * 270.00067 * 14 5 4 16 16 N 1.46494 * 109.47282 * 179.97438 * 15 14 5 17 17 C 1.34779 * 120.00067 * 179.97438 * 16 15 14 18 18 O 1.21563 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.47772 * 119.99990 * 179.97438 * 17 16 15 20 20 C 1.39625 * 120.15605 * 0.29757 * 19 17 16 21 21 C 1.37890 * 119.86273 * 180.24871 * 20 19 17 22 22 C 1.38424 * 120.18374 * 359.45447 * 21 20 19 23 23 C 1.38257 * 120.31632 * 0.27581 * 22 21 20 24 24 C 1.50701 * 119.93395 * 179.97438 * 23 22 21 25 25 C 1.38160 * 120.13091 * 359.97438 * 23 22 21 26 26 Cl 1.73606 * 120.09068 * 180.02562 * 25 23 22 27 27 H 1.08995 * 109.47485 * 59.99864 * 1 2 3 28 28 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46754 * 300.00171 * 1 2 3 30 30 H 1.08998 * 109.47730 * 60.00267 * 3 2 1 31 31 H 1.09007 * 109.47170 * 299.99726 * 3 2 1 32 32 H 1.09007 * 109.47036 * 304.99453 * 4 3 2 33 33 H 1.09001 * 109.47507 * 184.99974 * 4 3 2 34 34 H 0.96998 * 120.00177 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47188 * 150.00142 * 14 5 4 36 36 H 1.08997 * 109.47299 * 30.00092 * 14 5 4 37 37 H 1.09005 * 109.46922 * 59.99912 * 15 14 5 38 38 H 1.09000 * 109.47386 * 300.00488 * 15 14 5 39 39 H 0.97004 * 120.00254 * 0.02562 * 16 15 14 40 40 H 1.08001 * 120.06897 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.90650 * 179.72683 * 21 20 19 42 42 H 1.08004 * 119.84210 * 180.29833 * 22 21 20 43 43 H 1.08995 * 109.47446 * 89.99670 * 24 23 22 44 44 H 1.09005 * 109.47254 * 209.99579 * 24 23 22 45 45 H 1.09002 * 109.47021 * 329.99547 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.0105 -0.7999 -1.3657 7 1 3.7874 -1.2691 -2.3125 8 6 4.3327 -1.5796 -0.2633 9 7 5.0512 -1.0710 0.7152 10 14 3.7463 -3.3507 -0.1686 11 1 4.2907 -4.1146 -1.3197 12 1 4.2194 -3.9615 1.0997 13 1 2.2623 -3.3836 -0.2099 14 6 4.3786 1.4036 -2.3838 15 6 3.1589 1.7008 -3.2584 16 7 3.5617 2.5405 -4.3892 17 6 2.6467 2.9303 -5.2988 18 8 1.4870 2.5855 -5.1805 19 6 3.0529 3.7778 -6.4391 20 6 4.3850 4.1715 -6.5809 21 6 4.7565 4.9666 -7.6444 22 6 3.8148 5.3657 -8.5773 23 6 2.4948 4.9756 -8.4473 24 6 1.4767 5.4155 -9.4676 25 6 2.1073 4.1832 -7.3839 26 17 0.4497 3.6934 -7.2221 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8901 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.2766 -1.6160 1.4853 35 1 5.1306 0.8805 -2.9747 36 1 4.7955 2.3394 -2.0116 37 1 2.4070 2.2240 -2.6675 38 1 2.7420 0.7650 -3.6306 39 1 4.4872 2.8154 -4.4838 40 1 5.1221 3.8577 -5.8566 41 1 5.7858 5.2753 -7.7523 42 1 4.1128 5.9845 -9.4108 43 1 1.4252 4.6798 -10.2702 44 1 0.4999 5.5030 -8.9918 45 1 1.7685 6.3819 -9.8787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755840578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:35 Heat of formation + Delta-G solvation = -51.716737 kcal Electronic energy + Delta-G solvation = -27220.164740 eV Core-core repulsion = 23264.002851 eV Total energy + Delta-G solvation = -3956.161889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28464 -39.62635 -38.89437 -37.45074 -37.31297 -35.72053 -34.03358 -33.24326 -32.01661 -30.95694 -29.17804 -27.83274 -27.17835 -26.00162 -24.74410 -23.19265 -22.85037 -22.16034 -21.22688 -18.87451 -18.59688 -17.60343 -17.26542 -17.14228 -16.69732 -16.60389 -16.34482 -16.11354 -15.73540 -15.55174 -15.36319 -15.12987 -14.94852 -14.81672 -14.27661 -14.17057 -13.59689 -13.42987 -13.28530 -13.22509 -13.02170 -12.73227 -12.68624 -12.57937 -12.45807 -12.43388 -12.39935 -12.27785 -11.96458 -11.86455 -11.71279 -11.54805 -10.63300 -10.43705 -10.36902 -10.15128 -9.83565 -9.66238 -8.58837 -7.76733 -5.31974 -0.29004 0.15906 1.20034 1.45903 1.51162 1.59259 1.82853 2.09907 2.60142 2.70922 3.19446 3.35888 3.56792 3.65367 3.79636 3.94724 4.16746 4.21762 4.24526 4.29932 4.39647 4.48173 4.50553 4.56127 4.61348 4.70528 4.71507 4.76178 4.78753 4.80693 4.88960 4.94986 5.09161 5.10771 5.20978 5.21101 5.30800 5.36972 5.47050 5.72455 5.77217 5.82949 6.44742 6.54549 6.65197 7.20835 7.23980 7.92208 8.38538 9.20288 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.002655 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.710127 B =10541.791859 C =11226.632271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.392 6.392 3 C 0.052 3.948 4 C 0.135 3.865 5 N -0.586 5.586 6 C -0.245 4.245 7 H 0.044 0.956 8 C -0.016 4.016 9 N -0.912 5.912 10 Si 0.940 3.060 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.143 3.857 15 C 0.121 3.879 16 N -0.706 5.706 17 C 0.540 3.460 18 O -0.562 6.562 19 C -0.146 4.146 20 C -0.081 4.081 21 C -0.111 4.111 22 C -0.077 4.077 23 C -0.095 4.095 24 C -0.119 4.119 25 C -0.016 4.016 26 Cl -0.059 7.059 27 H 0.034 0.966 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.249 0.751 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.412 0.588 40 H 0.156 0.844 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 17.842 -18.240 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.009 3.991 5 N -0.306 5.306 6 C -0.375 4.375 7 H 0.061 0.939 8 C -0.213 4.213 9 N -0.557 5.557 10 Si 0.770 3.230 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.215 1.215 14 C 0.016 3.984 15 C -0.006 4.006 16 N -0.359 5.359 17 C 0.328 3.672 18 O -0.442 6.442 19 C -0.150 4.150 20 C -0.100 4.100 21 C -0.129 4.129 22 C -0.096 4.096 23 C -0.096 4.096 24 C -0.175 4.175 25 C -0.044 4.044 26 Cl -0.029 7.029 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.250 0.750 40 H 0.174 0.826 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.416 17.279 -17.947 24.953 hybrid contribution -0.776 -1.122 0.546 1.470 sum -2.192 16.156 -17.401 23.846 Atomic orbital electron populations 1.22781 0.82097 1.02352 0.99788 1.88160 1.19092 1.28689 1.95113 1.23340 0.97270 0.83972 0.98059 1.21118 0.89431 0.96749 0.91823 1.43717 1.74645 1.01935 1.10290 1.18829 1.39619 0.82531 0.96510 0.93869 1.25329 0.97478 1.00111 0.98431 1.70048 1.37343 1.37511 1.10782 0.85777 0.78421 0.82273 0.76515 1.20512 1.21971 1.21550 1.21043 0.92904 0.95167 0.89282 1.21931 0.99632 0.92463 0.86558 1.45778 1.12454 1.52191 1.25519 1.18667 0.85370 0.80350 0.82811 1.90838 1.19582 1.57322 1.76423 1.19807 0.95523 1.03221 0.96479 1.21631 0.92838 0.96243 0.99267 1.21646 1.01961 0.96286 0.92967 1.21682 0.90385 0.97863 0.99620 1.20121 0.97317 0.97055 0.95086 1.20937 0.96704 1.03145 0.96746 1.21230 0.86102 0.99965 0.97103 1.98390 1.17132 1.90032 1.97388 0.94713 0.90242 0.93193 0.93508 0.95004 0.90819 0.91852 0.94155 0.92668 0.91582 0.93576 0.94942 0.74978 0.82635 0.80969 0.81051 0.89888 0.91947 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.20 16 2 O -0.39 -18.19 9.97 -148.98 -1.48 -19.68 16 3 C 0.05 2.17 6.28 71.98 0.45 2.62 16 4 C 0.14 6.18 5.83 86.38 0.50 6.68 16 5 N -0.59 -28.17 2.45 -701.98 -1.72 -29.89 16 6 C -0.24 -13.46 8.75 84.03 0.73 -12.73 16 7 H 0.04 2.46 7.94 -2.91 -0.02 2.43 16 8 C -0.02 -0.91 4.95 84.86 0.42 -0.49 16 9 N -0.91 -52.89 11.37 21.65 0.25 -52.64 16 10 Si 0.94 46.84 29.62 68.60 2.03 48.88 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 14 C 0.14 5.44 5.82 86.38 0.50 5.95 16 15 C 0.12 4.46 6.00 86.38 0.52 4.98 16 16 N -0.71 -20.56 5.51 -466.04 -2.57 -23.13 16 17 C 0.54 17.49 7.77 86.76 0.67 18.16 16 18 O -0.56 -22.90 13.97 -3.91 -0.05 -22.95 16 19 C -0.15 -3.65 5.88 -20.07 -0.12 -3.77 16 20 C -0.08 -1.30 9.54 22.52 0.21 -1.09 16 21 C -0.11 -1.16 10.03 22.23 0.22 -0.94 16 22 C -0.08 -0.83 9.69 22.32 0.22 -0.62 16 23 C -0.09 -1.60 5.88 -19.88 -0.12 -1.72 16 24 C -0.12 -1.48 9.61 71.24 0.68 -0.79 16 25 C -0.02 -0.40 6.35 22.60 0.14 -0.26 16 26 Cl -0.06 -1.72 24.36 -2.72 -0.07 -1.78 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.29 6.46 -2.38 -0.02 1.28 16 32 H 0.07 3.96 5.38 -2.38 -0.01 3.95 16 33 H 0.06 2.54 7.84 -2.39 -0.02 2.52 16 34 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.05 2.10 8.04 -2.38 -0.02 2.08 16 36 H 0.07 2.17 7.86 -2.39 -0.02 2.15 16 37 H 0.05 1.84 6.46 -2.38 -0.02 1.82 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.41 8.75 6.51 -92.71 -0.60 8.15 16 40 H 0.16 1.74 6.41 -2.91 -0.02 1.72 16 41 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.95 6.90 -2.38 -0.02 0.93 16 45 H 0.10 0.68 8.08 -2.39 -0.02 0.66 16 Total: -1.00 -75.03 383.09 3.09 -71.94 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.41 Total: 11.05 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 6.30 Total: 18.20 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -4.04 Total: -105.66 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.54 Total: -42.63 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.78 kcal Total: -75.03 3.09 -71.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755840578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.224 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds