Wall clock time and date at job start Tue Mar 31 2020 23:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00467 * 3 2 1 6 6 H 1.48505 * 109.46847 * 150.00121 * 3 2 1 7 7 C 1.38803 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99773 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09000 * 112.84813 * 334.38493 * 14 13 11 16 16 C 1.53783 * 113.61758 * 105.58441 * 14 13 11 17 17 C 1.54050 * 86.98283 * 89.15928 * 16 14 13 18 18 H 1.09002 * 113.61571 * 270.88625 * 17 16 14 19 19 N 1.46505 * 113.69576 * 139.99477 * 17 16 14 20 20 C 1.34772 * 120.00523 * 107.46545 * 19 17 16 21 21 O 1.21740 * 119.99943 * 359.97438 * 20 19 17 22 22 C 1.41794 * 120.00067 * 180.02562 * 20 19 17 23 23 C 1.33463 * 118.78481 * 179.73543 * 22 20 19 24 24 O 1.34350 * 123.07615 * 180.11025 * 23 22 20 25 25 C 1.45346 * 117.54926 * 344.21473 * 24 23 22 26 26 C 1.53481 * 108.26385 * 47.22670 * 25 24 23 27 27 C 1.50413 * 118.78570 * 359.97438 * 22 20 19 28 28 C 1.53775 * 87.07915 * 25.43148 * 17 16 14 29 29 H 0.97000 * 120.00636 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 31 31 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.08997 * 113.61462 * 203.66215 * 16 14 13 34 34 H 1.09001 * 113.61141 * 334.56616 * 16 14 13 35 35 H 0.97003 * 119.99276 * 287.46319 * 19 17 16 36 36 H 1.08006 * 118.45954 * 0.38342 * 23 22 20 37 37 H 1.08998 * 109.70796 * 287.53517 * 25 24 23 38 38 H 1.08998 * 109.73941 * 166.93916 * 25 24 23 39 39 H 1.09005 * 109.70618 * 177.61013 * 26 25 24 40 40 H 1.08998 * 109.71071 * 56.98956 * 26 25 24 41 41 H 1.08998 * 109.45613 * 282.35609 * 27 22 20 42 42 H 1.08992 * 109.45961 * 42.32541 * 27 22 20 43 43 H 1.09000 * 113.62018 * 220.01830 * 28 17 16 44 44 H 1.09001 * 113.68869 * 89.12853 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3440 -2.2962 -0.0006 13 7 6.0457 -4.4947 -0.0010 14 6 7.4907 -4.7357 0.0050 15 1 8.0592 -3.9109 -0.4247 16 6 8.0300 -5.2135 1.3637 17 6 7.7388 -6.6479 0.8829 18 1 6.7315 -6.9913 1.1185 19 7 8.7723 -7.6159 1.2587 20 6 8.5259 -8.5245 2.2232 21 8 7.4447 -8.5406 2.7824 22 6 9.5264 -9.4611 2.5872 23 6 9.2583 -10.3466 3.5490 24 8 10.1423 -11.2697 3.9629 25 6 11.2917 -11.5289 3.1119 26 6 11.8976 -10.1808 2.6981 27 6 10.8525 -9.4163 1.8788 28 6 7.8877 -6.1133 -0.5512 29 1 -0.4851 0.8400 0.0004 30 1 3.6440 -3.4314 -0.8903 31 1 3.6433 -3.4318 0.8896 32 1 5.4291 -5.2434 -0.0011 33 1 9.0906 -5.0086 1.5090 34 1 7.4178 -4.9025 2.2102 35 1 9.6339 -7.6029 0.8133 36 1 8.2835 -10.3228 4.0134 37 1 10.9759 -12.0777 2.2247 38 1 12.0319 -12.1117 3.6603 39 1 12.7883 -10.3485 2.0926 40 1 12.1596 -9.6072 3.5872 41 1 10.7546 -9.8760 0.8954 42 1 11.1686 -8.3794 1.7650 43 1 7.1609 -6.5282 -1.2496 44 1 8.9091 -6.1535 -0.9297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758665137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:57 Heat of formation + Delta-G solvation = -79.055919 kcal Electronic energy + Delta-G solvation = -25924.077807 eV Core-core repulsion = 21968.774108 eV Total energy + Delta-G solvation = -3955.303699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18619 -40.32308 -39.24913 -37.93717 -34.97572 -34.04716 -32.53012 -32.41732 -31.94881 -29.18172 -26.37673 -26.03050 -25.72042 -25.52045 -23.73876 -21.73217 -21.04819 -19.83021 -19.34041 -18.31367 -17.86430 -17.18021 -16.56066 -16.34148 -16.12555 -15.86039 -15.54381 -15.20011 -14.97098 -14.94400 -14.59334 -14.27683 -14.05579 -13.79363 -13.61725 -13.31558 -13.22272 -12.94457 -12.78582 -12.77057 -12.35476 -12.00851 -11.91222 -11.55837 -11.29267 -11.25319 -11.08632 -10.99650 -10.81091 -10.58856 -10.13336 -9.84668 -9.54610 -9.35993 -9.03726 -8.98471 -8.90914 -8.49095 -6.90437 -6.27312 -3.99104 0.96302 2.61775 2.75007 2.92879 3.01752 3.06532 3.28727 3.34559 3.51718 3.64624 4.00274 4.07265 4.15109 4.24722 4.32519 4.34517 4.53546 4.62533 4.66540 4.71887 4.76226 4.81849 4.87681 4.99387 5.11714 5.18183 5.23757 5.33115 5.35122 5.40865 5.46600 5.58625 5.62268 5.71219 5.77833 5.82837 5.88736 6.03618 6.23055 6.58189 6.67561 7.24690 7.58822 7.95693 7.99158 8.43565 8.47411 9.18765 10.81920 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032666 B = 0.001687 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.947242 B =16589.587839 C =17027.598224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.535 3.465 12 O -0.518 6.518 13 N -0.720 5.720 14 C 0.129 3.871 15 H 0.108 0.892 16 C -0.164 4.164 17 C 0.123 3.877 18 H 0.116 0.884 19 N -0.719 5.719 20 C 0.572 3.428 21 O -0.557 6.557 22 C -0.323 4.323 23 C 0.164 3.836 24 O -0.310 6.310 25 C 0.052 3.948 26 C -0.158 4.158 27 C -0.073 4.073 28 C -0.153 4.153 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.401 0.599 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.399 0.601 36 H 0.181 0.819 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.612 -25.311 2.282 36.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.392 6.392 13 N -0.374 5.374 14 C 0.022 3.978 15 H 0.126 0.874 16 C -0.205 4.205 17 C 0.018 3.982 18 H 0.134 0.866 19 N -0.370 5.370 20 C 0.364 3.636 21 O -0.438 6.438 22 C -0.328 4.328 23 C 0.096 3.904 24 O -0.220 6.220 25 C -0.022 4.022 26 C -0.195 4.195 27 C -0.110 4.110 28 C -0.192 4.192 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.235 0.765 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.234 0.766 36 H 0.198 0.802 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 26.972 -23.780 2.843 36.070 hybrid contribution -0.579 -0.551 -0.477 0.931 sum 26.393 -24.331 2.366 35.974 Atomic orbital electron populations 1.69937 1.05913 1.27752 1.48068 1.24712 0.94447 0.98952 0.93184 0.86733 0.81907 0.83293 0.79902 1.19224 1.19944 1.15927 1.22325 0.88268 0.97566 1.58776 0.89355 1.84771 1.09303 1.00002 1.97436 1.23289 0.93866 1.04442 1.05950 1.20304 0.90612 0.82197 0.74800 1.90695 1.58759 1.42149 1.47582 1.45686 1.06292 1.08203 1.77193 1.21538 0.82557 0.97366 0.96367 0.87426 1.23999 1.02232 0.95346 0.98888 1.22673 0.93547 0.87403 0.94595 0.86616 1.45880 1.17540 1.33990 1.39544 1.16613 0.87114 0.80482 0.79414 1.90837 1.25720 1.73330 1.53919 1.20026 0.99140 1.04734 1.08887 1.23053 0.92291 0.84224 0.90840 1.86288 1.33917 1.54224 1.47606 1.23581 0.86409 0.97267 0.94982 1.22200 0.99038 0.96545 1.01740 1.20260 0.91046 1.01376 0.98312 1.23729 1.03155 0.95783 0.96503 0.91950 0.88398 0.88323 0.76469 0.89069 0.90298 0.76594 0.80195 0.90705 0.87220 0.89376 0.90201 0.90700 0.90280 0.89960 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.74 13.97 55.49 0.78 -25.96 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 7 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 8 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 10 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 11 C 0.53 9.42 7.85 -10.98 -0.09 9.33 16 12 O -0.52 -11.05 15.48 5.55 0.09 -10.96 16 13 N -0.72 -9.03 5.26 -53.02 -0.28 -9.31 16 14 C 0.13 1.36 4.29 -67.12 -0.29 1.07 16 15 H 0.11 1.29 7.50 -51.93 -0.39 0.90 16 16 C -0.16 -1.63 7.70 -25.78 -0.20 -1.83 16 17 C 0.12 1.07 4.13 -66.98 -0.28 0.80 16 18 H 0.12 1.22 7.46 -51.93 -0.39 0.83 16 19 N -0.72 -5.51 5.27 -55.72 -0.29 -5.80 16 20 C 0.57 5.74 7.53 -14.90 -0.11 5.62 16 21 O -0.56 -7.81 15.51 5.15 0.08 -7.73 16 22 C -0.32 -2.41 5.70 -105.07 -0.60 -3.01 16 23 C 0.16 1.24 10.47 29.06 0.30 1.54 16 24 O -0.31 -2.07 10.47 -14.89 -0.16 -2.23 16 25 C 0.05 0.18 7.15 37.41 0.27 0.45 16 26 C -0.16 -0.49 6.23 -26.36 -0.16 -0.65 16 27 C -0.07 -0.31 5.09 -27.90 -0.14 -0.45 16 28 C -0.15 -1.09 7.57 -25.92 -0.20 -1.29 16 29 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 32 H 0.40 4.04 8.70 -40.82 -0.36 3.68 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 1.96 6.84 -40.82 -0.28 1.68 16 36 H 0.18 1.42 7.21 -52.48 -0.38 1.04 16 37 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.28 7.15 -51.93 -0.37 -0.10 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.51 8.12 -51.93 -0.42 0.08 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -37.16 379.36 -8.22 -45.38 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.39 Total: 2.02 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.05 Total: -2.74 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.20 Total: -41.07 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.01 Total: -20.92 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.16 -8.22 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758665137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.678 kcal (2) G-P(sol) polarization free energy of solvation -37.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds