Wall clock time and date at job start Tue Mar 31 2020 23:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99773 * 2 1 4 4 H 1.48500 * 109.47356 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47342 * 30.00467 * 3 2 1 6 6 H 1.48505 * 109.46847 * 150.00121 * 3 2 1 7 7 C 1.38803 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99773 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09000 * 112.84813 * 334.38493 * 14 13 11 16 16 C 1.53783 * 113.61758 * 105.58441 * 14 13 11 17 17 C 1.54050 * 86.98283 * 89.15928 * 16 14 13 18 18 H 1.09002 * 113.61571 * 270.88625 * 17 16 14 19 19 N 1.46505 * 113.69576 * 139.99477 * 17 16 14 20 20 C 1.34772 * 120.00523 * 107.46545 * 19 17 16 21 21 O 1.21740 * 119.99943 * 359.97438 * 20 19 17 22 22 C 1.41794 * 120.00067 * 180.02562 * 20 19 17 23 23 C 1.33463 * 118.78481 * 179.73543 * 22 20 19 24 24 O 1.34350 * 123.07615 * 180.11025 * 23 22 20 25 25 C 1.45346 * 117.54926 * 344.21473 * 24 23 22 26 26 C 1.53481 * 108.26385 * 47.22670 * 25 24 23 27 27 C 1.50413 * 118.78570 * 359.97438 * 22 20 19 28 28 C 1.53775 * 87.07915 * 25.43148 * 17 16 14 29 29 H 0.97000 * 120.00636 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 31 31 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.08997 * 113.61462 * 203.66215 * 16 14 13 34 34 H 1.09001 * 113.61141 * 334.56616 * 16 14 13 35 35 H 0.97003 * 119.99276 * 287.46319 * 19 17 16 36 36 H 1.08006 * 118.45954 * 0.38342 * 23 22 20 37 37 H 1.08998 * 109.70796 * 287.53517 * 25 24 23 38 38 H 1.08998 * 109.73941 * 166.93916 * 25 24 23 39 39 H 1.09005 * 109.70618 * 177.61013 * 26 25 24 40 40 H 1.08998 * 109.71071 * 56.98956 * 26 25 24 41 41 H 1.08998 * 109.45613 * 282.35609 * 27 22 20 42 42 H 1.08992 * 109.45961 * 42.32541 * 27 22 20 43 43 H 1.09000 * 113.62018 * 220.01830 * 28 17 16 44 44 H 1.09001 * 113.68869 * 89.12853 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0001 11 6 5.5731 -3.2325 -0.0002 12 8 6.3440 -2.2962 -0.0006 13 7 6.0457 -4.4947 -0.0010 14 6 7.4907 -4.7357 0.0050 15 1 8.0592 -3.9109 -0.4247 16 6 8.0300 -5.2135 1.3637 17 6 7.7388 -6.6479 0.8829 18 1 6.7315 -6.9913 1.1185 19 7 8.7723 -7.6159 1.2587 20 6 8.5259 -8.5245 2.2232 21 8 7.4447 -8.5406 2.7824 22 6 9.5264 -9.4611 2.5872 23 6 9.2583 -10.3466 3.5490 24 8 10.1423 -11.2697 3.9629 25 6 11.2917 -11.5289 3.1119 26 6 11.8976 -10.1808 2.6981 27 6 10.8525 -9.4163 1.8788 28 6 7.8877 -6.1133 -0.5512 29 1 -0.4851 0.8400 0.0004 30 1 3.6440 -3.4314 -0.8903 31 1 3.6433 -3.4318 0.8896 32 1 5.4291 -5.2434 -0.0011 33 1 9.0906 -5.0086 1.5090 34 1 7.4178 -4.9025 2.2102 35 1 9.6339 -7.6029 0.8133 36 1 8.2835 -10.3228 4.0134 37 1 10.9759 -12.0777 2.2247 38 1 12.0319 -12.1117 3.6603 39 1 12.7883 -10.3485 2.0926 40 1 12.1596 -9.6072 3.5872 41 1 10.7546 -9.8760 0.8954 42 1 11.1686 -8.3794 1.7650 43 1 7.1609 -6.5282 -1.2496 44 1 8.9091 -6.1535 -0.9297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758665137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:56 Heat of formation + Delta-G solvation = -107.222041 kcal Electronic energy + Delta-G solvation = -25925.299182 eV Core-core repulsion = 21968.774108 eV Total energy + Delta-G solvation = -3956.525073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83788 -41.16341 -40.15649 -38.98165 -35.59022 -34.89907 -34.67534 -33.43482 -32.47699 -30.64205 -27.87281 -26.77193 -26.72068 -26.30908 -24.36188 -22.34810 -22.26191 -20.74067 -19.99560 -19.74892 -18.84486 -18.18816 -17.54910 -17.23238 -17.04387 -16.90267 -16.64337 -16.42563 -16.17054 -15.86234 -15.69965 -15.15791 -14.94791 -14.85829 -14.63002 -14.44761 -14.11029 -13.98588 -13.66046 -13.44099 -13.38715 -13.35591 -13.15229 -13.00328 -12.61105 -12.25758 -11.92841 -11.86842 -11.79266 -11.66212 -11.57549 -11.17458 -11.04913 -10.89886 -10.55259 -10.19918 -10.01374 -9.47731 -9.00283 -8.51951 -6.23082 0.35515 0.97864 1.31161 1.46210 1.52139 1.55219 2.15084 2.18697 2.25477 2.32333 2.47505 2.70441 2.86186 3.38875 3.56583 3.72447 3.76030 3.81055 3.90007 3.95962 4.03535 4.20717 4.22360 4.27070 4.38321 4.45719 4.59054 4.60932 4.71316 4.74661 4.80652 4.87918 4.94111 5.01423 5.02788 5.10020 5.19569 5.24675 5.44761 5.63444 5.70073 6.10833 6.20730 6.42389 6.62923 6.92926 7.16300 7.30135 8.60520 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.032666 B = 0.001687 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.947242 B =16589.587839 C =17027.598224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.532 4.532 8 H 0.061 0.939 9 S -0.172 6.172 10 C -0.114 4.114 11 C 0.540 3.460 12 O -0.559 6.559 13 N -0.699 5.699 14 C 0.116 3.884 15 H 0.098 0.902 16 C -0.163 4.163 17 C 0.124 3.876 18 H 0.096 0.904 19 N -0.703 5.703 20 C 0.565 3.435 21 O -0.607 6.607 22 C -0.328 4.328 23 C 0.161 3.839 24 O -0.323 6.323 25 C 0.043 3.957 26 C -0.154 4.154 27 C -0.072 4.072 28 C -0.125 4.125 29 H 0.277 0.723 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.415 0.585 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.416 0.584 36 H 0.166 0.834 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.724 -26.528 1.147 39.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.679 4.679 8 H 0.079 0.921 9 S 0.054 5.946 10 C -0.265 4.265 11 C 0.326 3.674 12 O -0.437 6.437 13 N -0.351 5.351 14 C 0.009 3.991 15 H 0.116 0.884 16 C -0.203 4.203 17 C 0.018 3.982 18 H 0.114 0.886 19 N -0.354 5.354 20 C 0.359 3.641 21 O -0.492 6.492 22 C -0.332 4.332 23 C 0.093 3.907 24 O -0.234 6.234 25 C -0.030 4.030 26 C -0.191 4.191 27 C -0.109 4.109 28 C -0.164 4.164 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.183 0.817 37 H 0.103 0.897 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 30.123 -25.053 1.683 39.216 hybrid contribution -1.498 -0.377 -0.084 1.547 sum 28.626 -25.430 1.600 38.323 Atomic orbital electron populations 1.70017 1.07338 1.29049 1.49072 1.25582 0.95288 1.02311 0.92821 0.85848 0.80633 0.79477 0.80292 1.18506 1.18324 1.16103 1.22478 0.90341 0.96709 1.58395 0.92076 1.84655 1.06338 1.05982 1.97590 1.23289 0.95981 0.99781 1.07434 1.19914 0.89312 0.83344 0.74874 1.90683 1.59208 1.43697 1.50091 1.45483 1.07909 1.06805 1.74939 1.21760 0.80698 0.99080 0.97514 0.88424 1.24012 1.02747 0.96117 0.97393 1.22529 0.93034 0.86829 0.95825 0.88573 1.45718 1.18031 1.32886 1.38801 1.17054 0.86894 0.80969 0.79228 1.90813 1.27848 1.74748 1.55751 1.20123 1.00070 1.03902 1.09141 1.22924 0.92235 0.84710 0.90862 1.86268 1.34733 1.53767 1.48589 1.23917 0.85687 0.98043 0.95403 1.22209 0.99514 0.95781 1.01597 1.20362 0.89375 1.02482 0.98730 1.23651 1.05206 0.92125 0.95369 0.91352 0.86641 0.87170 0.74812 0.87327 0.93055 0.74581 0.81726 0.89678 0.85252 0.86778 0.91141 0.89149 0.89229 0.88828 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.43 13.97 21.65 0.30 -56.13 16 2 C 0.05 2.70 5.50 84.86 0.47 3.16 16 3 Si 0.92 45.41 27.74 68.60 1.90 47.32 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 7 C -0.53 -31.41 10.04 67.96 0.68 -30.73 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 9 S -0.17 -8.80 18.55 -56.49 -1.05 -9.84 16 10 C -0.11 -4.36 6.16 71.24 0.44 -3.92 16 11 C 0.54 18.58 7.85 87.66 0.69 19.26 16 12 O -0.56 -23.67 15.48 -3.04 -0.05 -23.72 16 13 N -0.70 -16.49 5.26 -440.03 -2.32 -18.81 16 14 C 0.12 2.21 4.29 45.52 0.20 2.41 16 15 H 0.10 2.17 7.50 -2.39 -0.02 2.15 16 16 C -0.16 -3.01 7.70 31.21 0.24 -2.77 16 17 C 0.12 1.93 4.13 45.61 0.19 2.12 16 18 H 0.10 1.96 7.46 -2.39 -0.02 1.94 16 19 N -0.70 -9.30 5.27 -448.40 -2.36 -11.66 16 20 C 0.57 10.98 7.53 85.12 0.64 11.62 16 21 O -0.61 -17.53 15.51 -4.48 -0.07 -17.60 16 22 C -0.33 -4.53 5.70 -20.16 -0.11 -4.65 16 23 C 0.16 2.45 10.47 66.74 0.70 3.14 16 24 O -0.32 -4.08 10.47 -76.19 -0.80 -4.88 16 25 C 0.04 0.20 7.15 72.14 0.52 0.71 16 26 C -0.15 -0.51 6.23 30.83 0.19 -0.31 16 27 C -0.07 -0.41 5.09 29.84 0.15 -0.26 16 28 C -0.13 -1.36 7.57 31.12 0.24 -1.12 16 29 H 0.28 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.12 4.02 8.14 -2.40 -0.02 4.00 16 31 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 32 H 0.41 7.61 8.70 -92.71 -0.81 6.81 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.42 2.64 6.84 -92.71 -0.63 2.00 16 36 H 0.17 2.87 7.21 -2.91 -0.02 2.85 16 37 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 40 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.09 0.32 7.15 -2.39 -0.02 0.30 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.13 0.68 8.12 -2.39 -0.02 0.66 16 Total: -1.00 -83.40 379.36 0.34 -83.06 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -0.44 Total: 13.59 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.22 Total: -1.33 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -4.38 Total: -86.60 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.91 Total: -46.19 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.84 kcal Total: -83.40 0.34 -83.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758665137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.165 kcal (2) G-P(sol) polarization free energy of solvation -83.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds