Wall clock time and date at job start Tue Mar 31 2020 23:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46933 * 2 1 4 4 C 1.53000 * 109.47111 * 119.99421 * 2 1 3 5 5 N 1.46502 * 109.47032 * 180.02562 * 4 2 1 6 6 C 1.34784 * 119.99827 * 180.02562 * 5 4 2 7 7 O 1.21548 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.47877 * 119.99850 * 179.97438 * 6 5 4 9 9 C 1.39926 * 120.02819 * 359.72477 * 8 6 5 10 10 C 1.38325 * 120.36181 * 179.73831 * 9 8 6 11 11 C 1.37758 * 120.40660 * 0.56191 * 10 9 8 12 12 C 1.40745 * 120.04467 * 359.69782 * 11 10 9 13 13 C 1.41430 * 120.18190 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99793 * 28.24065 * 13 12 11 15 15 C 1.39935 * 120.00090 * 208.24218 * 13 12 11 16 16 N 1.30819 * 119.99994 * 10.98441 * 15 13 12 17 17 Si 1.86808 * 119.99893 * 190.98541 * 15 13 12 18 18 H 1.48496 * 109.46908 * 59.99726 * 17 15 13 19 19 H 1.48502 * 109.47073 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47169 * 300.00181 * 17 15 13 21 21 C 1.38997 * 120.02417 * 179.97438 * 8 6 5 22 22 N 1.46497 * 109.47447 * 239.99614 * 2 1 3 23 23 S 1.65606 * 119.99688 * 38.46036 * 22 2 1 24 24 C 1.81401 * 104.44764 * 60.31123 * 23 22 2 25 25 O 1.42101 * 104.27409 * 176.38114 * 23 22 2 26 26 O 1.42098 * 104.27597 * 304.23947 * 23 22 2 27 27 H 1.08997 * 109.47413 * 300.00118 * 1 2 3 28 28 H 1.09001 * 109.46883 * 60.00803 * 1 2 3 29 29 H 1.09003 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47163 * 177.68171 * 3 2 1 31 31 H 1.09007 * 109.46930 * 297.67505 * 3 2 1 32 32 H 1.08995 * 109.47616 * 57.68122 * 3 2 1 33 33 H 1.08997 * 109.47359 * 300.00494 * 4 2 1 34 34 H 1.09003 * 109.47002 * 60.00644 * 4 2 1 35 35 H 0.96992 * 120.00218 * 0.02562 * 5 4 2 36 36 H 1.08001 * 119.81823 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.79598 * 180.28078 * 10 9 8 38 38 H 1.08003 * 119.97336 * 179.71929 * 11 10 9 39 39 H 0.97008 * 119.99921 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.20522 * 359.95876 * 21 8 6 41 41 H 0.96993 * 120.00391 * 218.46298 * 22 2 1 42 42 H 1.09003 * 109.47048 * 51.79046 * 24 23 22 43 43 H 1.09002 * 109.46924 * 171.79051 * 24 23 22 44 44 H 1.08996 * 109.47085 * 291.78560 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5050 -0.7206 1.2496 6 6 4.1789 -1.3045 2.2603 7 8 3.5712 -1.8319 3.1713 8 6 5.6577 -1.3044 2.2604 9 6 6.3579 -0.7034 1.2085 10 6 7.7411 -0.6947 1.2042 11 6 8.4453 -1.2873 2.2292 12 6 7.7584 -1.9015 3.2931 13 6 8.4785 -2.5103 4.3471 14 1 9.4627 -2.1499 4.6075 15 6 7.9157 -3.5798 5.0527 16 7 6.8285 -4.1563 4.6089 17 14 8.7170 -4.1842 6.6282 18 1 8.7538 -3.0797 7.6201 19 1 7.9328 -5.3188 7.1787 20 1 10.1019 -4.6350 6.3379 21 6 6.3532 -1.9059 3.3027 22 7 2.0184 -0.6907 -1.1961 23 16 1.2356 -0.4957 -2.6424 24 6 1.3442 1.2834 -2.9796 25 8 2.0251 -1.2281 -3.5695 26 8 -0.1073 -0.8700 -2.3672 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1292 1.4428 0.0416 31 1 1.7110 1.9441 -0.9102 32 1 1.6431 1.9682 0.8684 33 1 1.6766 -0.2073 2.1392 34 1 1.6768 -1.7488 1.2493 35 1 3.9900 -0.3001 0.5225 36 1 5.8154 -0.2398 0.3978 37 1 8.2723 -0.2242 0.3900 38 1 9.5253 -1.2803 2.2165 39 1 6.4385 -4.8979 5.0978 40 1 5.8170 -2.3740 4.1149 41 1 2.8002 -1.2621 -1.1409 42 1 2.3821 1.6062 -2.8967 43 1 0.9803 1.4851 -3.9870 44 1 0.7356 1.8278 -2.2577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068188630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:18 Heat of formation + Delta-G solvation = -84.497213 kcal Electronic energy + Delta-G solvation = -27661.878082 eV Core-core repulsion = 23706.338432 eV Total energy + Delta-G solvation = -3955.539651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.69784 -38.28808 -37.28371 -36.85847 -36.19420 -33.87010 -33.43818 -31.16261 -30.36568 -29.86502 -29.46340 -27.56077 -26.45130 -25.21871 -22.36188 -21.08769 -20.80187 -19.67438 -19.37999 -18.20443 -17.58263 -16.86938 -16.53638 -16.07898 -15.59474 -15.40851 -15.09748 -14.73449 -14.54943 -14.28419 -13.93140 -13.76332 -13.60805 -13.37898 -13.16242 -13.11308 -12.67210 -12.63828 -12.53620 -12.41287 -12.18963 -12.04677 -11.82974 -11.65383 -11.59301 -11.26039 -11.15523 -11.11542 -10.92109 -10.77588 -10.51715 -10.05358 -9.87687 -9.74292 -9.27799 -9.08909 -8.76791 -7.67124 -7.51838 -6.76380 -4.45924 -0.02779 2.15378 2.37853 2.79648 3.06956 3.08830 3.13172 3.49997 3.56473 3.81883 3.88538 3.91741 4.16697 4.38131 4.51663 4.62762 4.64319 4.65084 4.90125 5.14116 5.26362 5.41690 5.47583 5.48867 5.56598 5.63065 5.76721 5.88914 5.95748 6.02300 6.08611 6.20597 6.66895 6.67872 6.76556 6.94889 6.97286 7.19627 7.34567 7.64745 7.69952 7.87907 8.02796 8.15660 8.47793 8.78737 8.80084 8.88138 10.17230 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.002567 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.777314 B =10903.637677 C =11387.267867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.163 3.837 3 C -0.186 4.186 4 C 0.126 3.874 5 N -0.739 5.739 6 C 0.564 3.436 7 O -0.542 6.542 8 C -0.132 4.132 9 C -0.215 4.215 10 C -0.100 4.100 11 C -0.207 4.207 12 C 0.098 3.902 13 C -0.461 4.461 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.791 5.791 17 Si 0.914 3.086 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.266 1.266 21 C -0.085 4.085 22 N -1.110 6.110 23 S 2.614 3.386 24 C -0.680 4.680 25 O -0.960 6.960 26 O -0.953 6.953 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.137 0.863 41 H 0.422 0.578 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 11.529 -11.218 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.074 3.926 3 C -0.245 4.245 4 C 0.000 4.000 5 N -0.395 5.395 6 C 0.355 3.645 7 O -0.420 6.420 8 C -0.135 4.135 9 C -0.235 4.235 10 C -0.118 4.118 11 C -0.227 4.227 12 C 0.096 3.904 13 C -0.490 4.490 14 H 0.098 0.902 15 C -0.147 4.147 16 N -0.416 5.416 17 Si 0.738 3.262 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.190 1.190 21 C -0.106 4.106 22 N -0.871 5.871 23 S 2.705 3.295 24 C -0.830 4.830 25 O -0.951 6.951 26 O -0.943 6.943 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.235 0.765 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.154 0.846 41 H 0.258 0.742 42 H 0.151 0.849 43 H 0.146 0.854 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.380 10.368 -11.023 19.551 hybrid contribution 1.178 0.338 0.388 1.286 sum -11.202 10.706 -10.635 18.794 Atomic orbital electron populations 1.22520 0.91879 1.05242 1.03397 1.20516 0.94938 0.91909 0.85215 1.22709 1.03126 0.95048 1.03569 1.21468 0.81376 1.01244 0.95876 1.45972 1.05947 1.60899 1.26651 1.18841 0.88446 0.76522 0.80673 1.90711 1.70370 1.44826 1.36067 1.19478 0.90002 1.05171 0.98833 1.20333 0.94102 1.09447 0.99611 1.20438 0.93632 0.99939 0.97813 1.21157 0.98024 1.07672 0.95886 1.17617 0.91542 0.89882 0.91394 1.19553 1.02972 1.13160 1.13324 0.90211 1.25950 0.94492 0.95871 0.98435 1.69742 1.17361 1.17983 1.36490 0.86270 0.79817 0.78782 0.81284 1.18815 1.20234 1.19016 1.21720 0.94198 0.97247 0.97388 1.55697 1.46360 1.61489 1.23559 1.04745 0.74477 0.77306 0.72927 1.30820 1.12058 1.28105 1.11983 1.93627 1.70458 1.68829 1.62147 1.93655 1.36531 1.80628 1.83495 0.90580 0.91066 0.89811 0.91019 0.91489 0.90306 0.90283 0.90653 0.76532 0.89379 0.88884 0.88578 0.90436 0.84558 0.74206 0.84866 0.85353 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 7.10 37.16 0.26 -1.11 16 2 C 0.16 1.39 0.82 -131.82 -0.11 1.28 16 3 C -0.19 -1.22 8.42 37.16 0.31 -0.91 16 4 C 0.13 1.52 4.70 -4.04 -0.02 1.50 16 5 N -0.74 -10.78 4.77 -61.24 -0.29 -11.08 16 6 C 0.56 11.62 7.77 -12.31 -0.10 11.52 16 7 O -0.54 -13.03 16.33 5.32 0.09 -12.94 16 8 C -0.13 -2.98 5.87 -105.04 -0.62 -3.59 16 9 C -0.21 -4.28 9.55 -38.92 -0.37 -4.65 16 10 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 11 C -0.21 -4.80 9.78 -38.81 -0.38 -5.18 16 12 C 0.10 2.54 5.55 -106.87 -0.59 1.95 16 13 C -0.46 -11.94 9.06 -37.73 -0.34 -12.28 16 14 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 15 C 0.07 1.77 5.25 -17.35 -0.09 1.68 16 16 N -0.79 -20.82 10.82 55.55 0.60 -20.22 16 17 Si 0.91 18.70 29.57 -169.99 -5.03 13.67 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 21 C -0.09 -2.22 8.20 -38.44 -0.32 -2.54 16 22 N -1.11 -9.66 5.28 0.54 0.00 -9.65 16 23 S 2.61 22.34 5.64 -107.50 -0.61 21.73 16 24 C -0.68 -3.05 9.09 101.05 0.92 -2.13 16 25 O -0.96 -12.06 18.08 -57.54 -1.04 -13.10 16 26 O -0.95 -10.65 14.49 -57.54 -0.83 -11.48 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.50 5.29 -51.93 -0.27 0.22 16 29 H 0.08 0.81 7.74 -51.93 -0.40 0.40 16 30 H 0.07 0.51 6.80 -51.93 -0.35 0.16 16 31 H 0.07 0.29 4.23 -51.93 -0.22 0.07 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 4.90 4.92 -40.82 -0.20 4.70 16 36 H 0.09 1.40 6.38 -52.49 -0.33 1.06 16 37 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 39 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 40 H 0.14 3.87 5.77 -52.49 -0.30 3.56 16 41 H 0.42 3.90 8.01 -34.47 -0.28 3.63 16 42 H 0.13 0.45 7.99 -51.92 -0.41 0.04 16 43 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 44 H 0.13 0.41 5.77 -51.93 -0.30 0.11 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -34.33 363.37 -9.05 -43.38 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.58 Total: 11.12 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -1.83 Total: -16.91 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.31 Total: -40.95 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.79 Total: -37.52 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: 22.34 SS G_CDS: -0.61 Total: 21.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.33 -9.05 -43.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068188630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.116 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds