Wall clock time and date at job start Tue Mar 31 2020 23:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46933 * 2 1 4 4 C 1.53000 * 109.47111 * 119.99421 * 2 1 3 5 5 N 1.46502 * 109.47032 * 180.02562 * 4 2 1 6 6 C 1.34784 * 119.99827 * 180.02562 * 5 4 2 7 7 O 1.21548 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.47877 * 119.99850 * 179.97438 * 6 5 4 9 9 C 1.39926 * 120.02819 * 359.72477 * 8 6 5 10 10 C 1.38325 * 120.36181 * 179.73831 * 9 8 6 11 11 C 1.37758 * 120.40660 * 0.56191 * 10 9 8 12 12 C 1.40745 * 120.04467 * 359.69782 * 11 10 9 13 13 C 1.41430 * 120.18190 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99793 * 28.24065 * 13 12 11 15 15 C 1.39935 * 120.00090 * 208.24218 * 13 12 11 16 16 N 1.30819 * 119.99994 * 10.98441 * 15 13 12 17 17 Si 1.86808 * 119.99893 * 190.98541 * 15 13 12 18 18 H 1.48496 * 109.46908 * 59.99726 * 17 15 13 19 19 H 1.48502 * 109.47073 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47169 * 300.00181 * 17 15 13 21 21 C 1.38997 * 120.02417 * 179.97438 * 8 6 5 22 22 N 1.46497 * 109.47447 * 239.99614 * 2 1 3 23 23 S 1.65606 * 119.99688 * 38.46036 * 22 2 1 24 24 C 1.81401 * 104.44764 * 60.31123 * 23 22 2 25 25 O 1.42101 * 104.27409 * 176.38114 * 23 22 2 26 26 O 1.42098 * 104.27597 * 304.23947 * 23 22 2 27 27 H 1.08997 * 109.47413 * 300.00118 * 1 2 3 28 28 H 1.09001 * 109.46883 * 60.00803 * 1 2 3 29 29 H 1.09003 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47163 * 177.68171 * 3 2 1 31 31 H 1.09007 * 109.46930 * 297.67505 * 3 2 1 32 32 H 1.08995 * 109.47616 * 57.68122 * 3 2 1 33 33 H 1.08997 * 109.47359 * 300.00494 * 4 2 1 34 34 H 1.09003 * 109.47002 * 60.00644 * 4 2 1 35 35 H 0.96992 * 120.00218 * 0.02562 * 5 4 2 36 36 H 1.08001 * 119.81823 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.79598 * 180.28078 * 10 9 8 38 38 H 1.08003 * 119.97336 * 179.71929 * 11 10 9 39 39 H 0.97008 * 119.99921 * 179.97438 * 16 15 13 40 40 H 1.07997 * 120.20522 * 359.95876 * 21 8 6 41 41 H 0.96993 * 120.00391 * 218.46298 * 22 2 1 42 42 H 1.09003 * 109.47048 * 51.79046 * 24 23 22 43 43 H 1.09002 * 109.46924 * 171.79051 * 24 23 22 44 44 H 1.08996 * 109.47085 * 291.78560 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5050 -0.7206 1.2496 6 6 4.1789 -1.3045 2.2603 7 8 3.5712 -1.8319 3.1713 8 6 5.6577 -1.3044 2.2604 9 6 6.3579 -0.7034 1.2085 10 6 7.7411 -0.6947 1.2042 11 6 8.4453 -1.2873 2.2292 12 6 7.7584 -1.9015 3.2931 13 6 8.4785 -2.5103 4.3471 14 1 9.4627 -2.1499 4.6075 15 6 7.9157 -3.5798 5.0527 16 7 6.8285 -4.1563 4.6089 17 14 8.7170 -4.1842 6.6282 18 1 8.7538 -3.0797 7.6201 19 1 7.9328 -5.3188 7.1787 20 1 10.1019 -4.6350 6.3379 21 6 6.3532 -1.9059 3.3027 22 7 2.0184 -0.6907 -1.1961 23 16 1.2356 -0.4957 -2.6424 24 6 1.3442 1.2834 -2.9796 25 8 2.0251 -1.2281 -3.5695 26 8 -0.1073 -0.8700 -2.3672 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1292 1.4428 0.0416 31 1 1.7110 1.9441 -0.9102 32 1 1.6431 1.9682 0.8684 33 1 1.6766 -0.2073 2.1392 34 1 1.6768 -1.7488 1.2493 35 1 3.9900 -0.3001 0.5225 36 1 5.8154 -0.2398 0.3978 37 1 8.2723 -0.2242 0.3900 38 1 9.5253 -1.2803 2.2165 39 1 6.4385 -4.8979 5.0978 40 1 5.8170 -2.3740 4.1149 41 1 2.8002 -1.2621 -1.1409 42 1 2.3821 1.6062 -2.8967 43 1 0.9803 1.4851 -3.9870 44 1 0.7356 1.8278 -2.2577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068188630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:18 Heat of formation + Delta-G solvation = -111.296381 kcal Electronic energy + Delta-G solvation = -27663.040182 eV Core-core repulsion = 23706.338432 eV Total energy + Delta-G solvation = -3956.701750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08140 -39.42036 -38.62023 -37.98277 -36.96499 -35.62009 -34.85176 -32.17461 -31.62871 -31.25292 -30.46400 -28.11846 -27.71614 -26.92639 -23.94353 -22.77329 -21.73269 -21.16094 -20.10155 -19.59736 -18.70093 -17.96873 -17.42022 -17.19702 -17.07828 -16.64015 -16.37417 -16.30400 -15.71279 -15.44537 -15.05485 -14.79550 -14.52543 -14.37826 -14.26189 -14.19835 -14.03595 -13.67891 -13.62371 -13.43127 -13.15933 -12.99139 -12.88466 -12.80011 -12.77394 -12.51548 -12.43828 -12.23899 -12.18815 -11.88840 -11.85951 -11.64197 -11.50065 -11.10038 -10.78041 -10.53167 -10.15801 -9.44201 -9.33799 -8.60132 -6.39651 -0.64152 0.38914 1.03018 1.36743 1.48343 1.49902 1.71700 2.11844 2.20615 2.25449 2.82339 2.90674 3.31849 3.42508 3.70226 3.88550 3.92589 4.03530 4.07171 4.16835 4.31156 4.43100 4.57412 4.59743 4.70520 4.74693 4.83463 4.91905 4.96823 5.02193 5.10114 5.19756 5.20750 5.33170 5.35899 5.42920 5.48498 5.54058 5.87326 5.92459 5.97762 6.07712 6.30592 6.51665 6.69112 6.90165 6.96040 7.32134 8.34906 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.002567 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.777314 B =10903.637677 C =11387.267867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.173 3.827 3 C -0.189 4.189 4 C 0.121 3.879 5 N -0.710 5.710 6 C 0.561 3.439 7 O -0.587 6.587 8 C -0.142 4.142 9 C -0.190 4.190 10 C -0.098 4.098 11 C -0.212 4.212 12 C 0.065 3.935 13 C -0.499 4.499 14 H 0.082 0.918 15 C 0.026 3.974 16 N -0.834 5.834 17 Si 0.985 3.015 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.254 1.254 21 C -0.124 4.124 22 N -1.116 6.116 23 S 2.613 3.387 24 C -0.658 4.658 25 O -1.007 7.007 26 O -0.989 6.989 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.413 0.587 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.284 0.716 40 H 0.100 0.900 41 H 0.418 0.582 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 14.873 -13.524 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.084 3.916 3 C -0.247 4.247 4 C -0.004 4.004 5 N -0.364 5.364 6 C 0.351 3.649 7 O -0.469 6.469 8 C -0.145 4.145 9 C -0.210 4.210 10 C -0.116 4.116 11 C -0.232 4.232 12 C 0.063 3.937 13 C -0.529 4.529 14 H 0.101 0.899 15 C -0.188 4.188 16 N -0.460 5.460 17 Si 0.805 3.195 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.178 1.178 21 C -0.145 4.145 22 N -0.875 5.875 23 S 2.710 3.290 24 C -0.811 4.811 25 O -0.998 6.998 26 O -0.979 6.979 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.253 0.747 42 H 0.174 0.826 43 H 0.168 0.832 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.361 13.709 -13.378 22.797 hybrid contribution 1.075 -0.515 0.881 1.482 sum -11.286 13.193 -12.496 21.392 Atomic orbital electron populations 1.22574 0.91426 1.04345 1.05062 1.20488 0.95169 0.92808 0.83118 1.22780 1.03128 0.93165 1.05627 1.21674 0.79376 1.00981 0.98390 1.45684 1.07122 1.58625 1.24976 1.18701 0.87972 0.76843 0.81432 1.90690 1.70920 1.47050 1.38210 1.19803 0.91463 1.04568 0.98703 1.20889 0.94386 1.06590 0.99128 1.20940 0.94014 0.98747 0.97930 1.21465 0.98905 1.06996 0.95844 1.17954 0.91866 0.91112 0.92781 1.19835 1.03587 1.14442 1.15038 0.89949 1.26831 0.94833 0.95680 1.01422 1.69869 1.19225 1.18867 1.38087 0.85212 0.79097 0.78200 0.76967 1.18378 1.19867 1.17840 1.21512 0.94628 0.99990 0.98382 1.55651 1.46015 1.62017 1.23785 1.04536 0.73112 0.79338 0.72041 1.30616 1.14334 1.22158 1.14042 1.93568 1.71192 1.71782 1.63221 1.93613 1.37955 1.82662 1.83681 0.88884 0.89427 0.92133 0.91034 0.88518 0.89452 0.89960 0.92594 0.74783 0.84249 0.84243 0.87444 0.90548 0.88235 0.74685 0.82618 0.83207 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 7.10 71.98 0.51 -1.96 16 2 C 0.17 2.53 0.82 3.60 0.00 2.53 16 3 C -0.19 -1.62 8.42 71.98 0.61 -1.02 16 4 C 0.12 2.80 4.70 86.38 0.41 3.21 16 5 N -0.71 -19.65 4.77 -465.93 -2.22 -21.87 16 6 C 0.56 23.31 7.77 86.79 0.67 23.98 16 7 O -0.59 -29.62 16.33 -3.87 -0.06 -29.69 16 8 C -0.14 -6.45 5.87 -20.13 -0.12 -6.57 16 9 C -0.19 -6.98 9.55 22.70 0.22 -6.76 16 10 C -0.10 -3.70 10.01 22.18 0.22 -3.48 16 11 C -0.21 -9.68 9.78 22.77 0.22 -9.46 16 12 C 0.06 3.49 5.55 -21.32 -0.12 3.37 16 13 C -0.50 -27.13 9.06 23.47 0.21 -26.91 16 14 H 0.08 4.21 7.87 -2.91 -0.02 4.19 16 15 C 0.03 1.36 5.25 85.25 0.45 1.80 16 16 N -0.83 -46.94 10.82 21.82 0.24 -46.70 16 17 Si 0.98 39.93 29.57 68.60 2.03 41.96 16 18 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 21 C -0.12 -6.81 8.20 23.01 0.19 -6.62 16 22 N -1.12 -17.19 5.28 -152.22 -0.80 -17.99 16 23 S 2.61 39.50 5.64 -56.49 -0.32 39.18 16 24 C -0.66 -2.50 9.09 113.37 1.03 -1.47 16 25 O -1.01 -24.42 18.08 -127.65 -2.31 -26.73 16 26 O -0.99 -21.12 14.49 -127.65 -1.85 -22.97 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 0.95 5.29 -2.39 -0.01 0.94 16 29 H 0.06 1.15 7.74 -2.39 -0.02 1.13 16 30 H 0.07 0.65 6.80 -2.39 -0.02 0.64 16 31 H 0.10 0.25 4.23 -2.38 -0.01 0.24 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.41 8.76 4.92 -92.71 -0.46 8.31 16 36 H 0.14 3.63 6.38 -2.91 -0.02 3.61 16 37 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.28 14.87 8.30 -92.70 -0.77 14.10 16 40 H 0.10 6.13 5.77 -2.91 -0.02 6.12 16 41 H 0.42 7.10 8.01 -96.75 -0.77 6.33 16 42 H 0.16 0.07 7.99 -2.39 -0.02 0.06 16 43 H 0.15 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.16 -0.02 5.77 -2.39 -0.01 -0.04 16 Total: -1.00 -82.55 363.37 -0.97 -83.52 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.17 Total: 30.63 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 4.51 Total: -29.35 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.79 Total: -86.57 kcal Atomic # 8 Polarization: -75.17 SS G_CDS: -4.22 Total: -79.39 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Atomic # 16 Polarization: 39.50 SS G_CDS: -0.32 Total: 39.18 kcal Total: -82.55 -0.97 -83.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068188630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.772 kcal (2) G-P(sol) polarization free energy of solvation -82.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds