Wall clock time and date at job start Tue Mar 31 2020 23:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 H 1.08998 * 109.47540 * 54.99357 * 3 2 1 5 5 C 1.50700 * 109.46823 * 174.99569 * 3 2 1 6 6 H 1.08007 * 119.99896 * 120.00213 * 5 3 2 7 7 C 1.37876 * 120.00237 * 299.99622 * 5 3 2 8 8 N 1.31512 * 119.99877 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 119.99715 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.46977 * 90.00495 * 9 7 5 11 11 H 1.48505 * 109.46823 * 209.99648 * 9 7 5 12 12 H 1.48492 * 109.47332 * 329.99815 * 9 7 5 13 13 N 1.46497 * 109.46861 * 294.99498 * 3 2 1 14 14 C 1.34779 * 120.00075 * 85.00374 * 13 3 2 15 15 O 1.21581 * 119.99686 * 359.97438 * 14 13 3 16 16 N 1.34781 * 119.99769 * 180.02562 * 14 13 3 17 17 C 1.39951 * 119.99706 * 185.31678 * 16 14 13 18 18 C 1.38879 * 120.06856 * 213.28634 * 17 16 14 19 19 C 1.38095 * 119.93170 * 179.72180 * 18 17 16 20 20 C 1.38310 * 120.06543 * 0.50491 * 19 18 17 21 21 S 1.76197 * 119.92605 * 179.76741 * 20 19 18 22 22 C 1.81399 * 104.44867 * 114.72627 * 21 20 19 23 23 O 1.42098 * 104.28140 * 358.65197 * 21 20 19 24 24 O 1.42103 * 104.27399 * 230.79543 * 21 20 19 25 25 C 1.38258 * 120.14003 * 359.49447 * 20 19 18 26 26 C 1.50692 * 119.96372 * 180.27651 * 25 20 19 27 27 C 1.38137 * 120.06784 * 0.24790 * 25 20 19 28 28 H 1.08995 * 109.47490 * 300.00605 * 1 2 3 29 29 H 1.09000 * 109.46850 * 60.00802 * 1 2 3 30 30 H 1.09002 * 109.46646 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47699 * 239.99872 * 2 1 3 32 32 H 1.09000 * 109.46850 * 119.99197 * 2 1 3 33 33 H 0.96999 * 120.00331 * 179.97438 * 8 7 5 34 34 H 0.97006 * 120.00127 * 265.00065 * 13 3 2 35 35 H 0.96993 * 120.00413 * 5.30605 * 16 14 13 36 36 H 1.07999 * 120.03786 * 359.97438 * 18 17 16 37 37 H 1.07994 * 119.96905 * 180.25562 * 19 18 17 38 38 H 1.08996 * 109.47367 * 299.99569 * 22 21 20 39 39 H 1.09005 * 109.47102 * 59.99990 * 22 21 20 40 40 H 1.08998 * 109.47249 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47776 * 89.99597 * 26 25 20 42 42 H 1.08999 * 109.47100 * 209.99746 * 26 25 20 43 43 H 1.09002 * 109.47486 * 329.99521 * 26 25 20 44 44 H 1.08008 * 120.03200 * 179.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1472 1.8890 -0.6522 7 6 4.1431 0.8786 1.2281 8 7 5.4538 0.8807 1.3365 9 14 3.0961 0.1092 2.5702 10 1 2.8755 -1.3270 2.2636 11 1 3.7934 0.2351 3.8753 12 1 1.7875 0.8075 2.6386 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3416 2.6318 -0.4323 16 7 0.0784 3.2663 -2.5191 17 6 -1.1393 3.9510 -2.6029 18 6 -1.8452 3.9715 -3.7988 19 6 -3.0493 4.6430 -3.8768 20 6 -3.5473 5.3036 -2.7683 21 16 -5.0811 6.1645 -2.8737 22 6 -6.1856 5.2599 -1.7546 23 8 -5.4883 5.9912 -4.2240 24 8 -4.7943 7.4560 -2.3550 25 6 -2.8470 5.2851 -1.5764 26 6 -3.3964 6.0009 -0.3695 27 6 -1.6446 4.6106 -1.4905 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.8769 0.4830 2.1134 34 1 2.2720 2.1231 -1.9978 35 1 0.6657 3.2253 -3.2899 36 1 -1.4548 3.4593 -4.6658 37 1 -3.6007 4.6559 -4.8052 38 1 -6.2753 4.2265 -2.0894 39 1 -5.7759 5.2805 -0.7446 40 1 -7.1692 5.7295 -1.7569 41 1 -4.0275 5.3195 0.2012 42 1 -2.5723 6.3429 0.2564 43 1 -3.9870 6.8580 -0.6930 44 1 -1.0978 4.5968 -0.5592 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158602469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:43 Heat of formation + Delta-G solvation = -89.529883 kcal Electronic energy + Delta-G solvation = -27674.203605 eV Core-core repulsion = 23718.445721 eV Total energy + Delta-G solvation = -3955.757884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84386 -40.10918 -38.20660 -37.51508 -36.95036 -35.99326 -34.46685 -33.70525 -33.12764 -30.98661 -30.18812 -29.26141 -28.03385 -25.05952 -24.27579 -22.96835 -22.39219 -21.55874 -20.03890 -20.01600 -18.55943 -18.48990 -18.20844 -17.38111 -17.25158 -17.02787 -16.50365 -16.16581 -15.78473 -15.38409 -15.20587 -15.08105 -14.98242 -14.41715 -14.33573 -14.20004 -13.97359 -13.87283 -13.79504 -13.67133 -13.54395 -13.14640 -13.07107 -12.96510 -12.80219 -12.68406 -12.45731 -12.31797 -11.91433 -11.89615 -11.72293 -11.51626 -11.35000 -11.26395 -11.08952 -10.87399 -9.91504 -9.81258 -9.35760 -8.39457 -6.45507 -0.80464 -0.19330 0.31517 1.27077 1.35459 1.44634 1.58081 1.94164 2.01469 2.24990 2.52554 2.96305 2.97055 3.23356 3.30054 3.68561 3.82814 4.12349 4.15368 4.19539 4.22686 4.29580 4.31215 4.42695 4.45600 4.61152 4.69028 4.75130 4.84210 4.92618 4.98140 4.99570 5.08872 5.14844 5.18240 5.21832 5.27332 5.37580 5.43922 5.51799 5.60172 5.90624 5.91890 6.23775 6.57354 7.04751 7.20047 7.52338 8.75696 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.002535 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.147198 B =11041.685796 C =11313.744749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.139 4.139 3 C 0.269 3.731 4 H 0.026 0.974 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.259 1.259 11 H -0.295 1.295 12 H -0.258 1.258 13 N -0.708 5.708 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.679 5.679 17 C 0.220 3.780 18 C -0.176 4.176 19 C -0.003 4.003 20 C -0.693 4.693 21 S 2.512 3.488 22 C -0.635 4.635 23 O -0.973 6.973 24 O -0.971 6.971 25 C 0.027 3.973 26 C -0.179 4.179 27 C -0.171 4.171 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.270 0.730 34 H 0.405 0.595 35 H 0.424 0.576 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.060 6.151 -9.482 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.177 4.177 3 C 0.164 3.836 4 H 0.043 0.957 5 C -0.572 4.572 6 H 0.075 0.925 7 C -0.170 4.170 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.182 1.182 13 N -0.360 5.360 14 C 0.397 3.603 15 O -0.480 6.480 16 N -0.327 5.327 17 C 0.122 3.878 18 C -0.198 4.198 19 C -0.023 4.023 20 C -0.780 4.780 21 S 2.695 3.305 22 C -0.789 4.789 23 O -0.970 6.970 24 O -0.968 6.968 25 C 0.025 3.975 26 C -0.235 4.235 27 C -0.193 4.193 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.240 0.760 35 H 0.263 0.737 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.177 0.823 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.604 6.744 -9.009 26.150 hybrid contribution 1.580 -1.155 0.603 2.048 sum -22.024 5.590 -8.407 24.228 Atomic orbital electron populations 1.21721 0.95162 1.00365 1.01529 1.22233 0.95848 0.98512 1.01112 1.18690 0.93008 0.89358 0.82549 0.95652 1.21262 0.90284 1.38667 1.07013 0.92541 1.25533 0.95717 0.95865 0.99852 1.69970 1.10335 1.46074 1.30867 0.86040 0.79364 0.79984 0.78274 1.18525 1.22219 1.18223 1.45171 1.13977 1.58817 1.18073 1.16069 0.82796 0.78515 0.82910 1.90896 1.52373 1.65260 1.39511 1.42710 1.20631 1.54806 1.14588 1.18010 0.85169 0.89360 0.95221 1.21222 0.96000 1.04841 0.97697 1.21006 0.93943 0.89851 0.97461 1.30356 1.25205 1.22076 1.00330 1.04665 0.75208 0.75074 0.75537 1.30159 1.15821 1.16287 1.16621 1.93504 1.82452 1.86963 1.34131 1.93498 1.84190 1.37915 1.81192 1.19558 0.92394 0.91523 0.93999 1.21794 1.04235 1.01938 0.95519 1.21219 0.98684 1.00024 0.99354 0.94353 0.92959 0.92500 0.91278 0.93725 0.92045 0.75951 0.73689 0.82089 0.81776 0.82888 0.83330 0.82251 0.87195 0.89968 0.87318 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.51 71.98 0.61 -4.19 16 2 C -0.14 -5.69 5.11 30.60 0.16 -5.53 16 3 C 0.27 12.06 1.83 44.25 0.08 12.14 16 4 H 0.03 1.28 6.64 -2.39 -0.02 1.27 16 5 C -0.53 -28.10 9.31 25.60 0.24 -27.86 16 6 H 0.06 3.17 7.98 -2.91 -0.02 3.15 16 7 C 0.03 1.66 5.45 84.65 0.46 2.13 16 8 N -0.93 -55.01 13.96 21.45 0.30 -54.71 16 9 Si 0.94 43.51 24.41 68.60 1.67 45.19 16 10 H -0.26 -11.34 6.83 99.48 0.68 -10.66 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.26 -11.80 6.53 99.48 0.65 -11.15 16 13 N -0.71 -25.69 5.03 -461.41 -2.32 -28.01 16 14 C 0.70 23.96 6.87 179.05 1.23 25.19 16 15 O -0.60 -24.35 11.16 -3.97 -0.04 -24.39 16 16 N -0.68 -17.41 5.35 -317.18 -1.70 -19.11 16 17 C 0.22 5.67 6.28 38.14 0.24 5.91 16 18 C -0.18 -3.51 9.96 22.39 0.22 -3.29 16 19 C 0.00 -0.06 9.49 22.25 0.21 0.15 16 20 C -0.69 -13.93 5.58 22.29 0.12 -13.81 16 21 S 2.51 39.90 5.20 -56.49 -0.29 39.61 16 22 C -0.64 -3.82 10.59 113.37 1.20 -2.62 16 23 O -0.97 -20.50 16.73 -127.65 -2.14 -22.63 16 24 O -0.97 -21.51 15.35 -127.65 -1.96 -23.47 16 25 C 0.03 0.62 5.86 -19.89 -0.12 0.51 16 26 C -0.18 -3.23 8.45 71.23 0.60 -2.63 16 27 C -0.17 -4.88 8.31 22.39 0.19 -4.69 16 28 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 29 H 0.05 1.90 5.64 -2.39 -0.01 1.89 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.04 1.93 3.21 -2.39 -0.01 1.92 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.41 12.68 8.56 -92.70 -0.79 11.88 16 35 H 0.42 7.77 8.83 -92.71 -0.82 6.95 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.16 2.52 7.20 -2.91 -0.02 2.50 16 38 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.15 0.59 6.00 -2.39 -0.01 0.58 16 40 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.11 1.35 7.09 -2.39 -0.02 1.33 16 42 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 43 H 0.11 1.83 4.88 -2.39 -0.01 1.81 16 44 H 0.12 4.07 6.42 -2.91 -0.02 4.05 16 Total: -1.00 -77.38 356.58 -1.65 -79.03 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.63 Total: 27.08 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 5.45 Total: -18.59 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -3.72 Total: -101.83 kcal Atomic # 8 Polarization: -66.35 SS G_CDS: -4.14 Total: -70.49 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.67 Total: 45.19 kcal Atomic # 16 Polarization: 39.90 SS G_CDS: -0.29 Total: 39.61 kcal Total: -77.38 -1.65 -79.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158602469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.497 kcal (2) G-P(sol) polarization free energy of solvation -77.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds