Wall clock time and date at job start Tue Mar 31 2020 23:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48491 * 109.47220 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.46897 * 300.00742 * 9 7 5 12 12 H 1.48499 * 109.47015 * 60.00212 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21280 * 120.00006 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99820 * 180.02562 * 14 13 3 17 17 N 1.46497 * 109.47199 * 179.97438 * 16 14 13 18 18 C 1.46502 * 119.99879 * 84.99586 * 17 16 14 19 19 S 1.65592 * 120.00022 * 264.99832 * 17 16 14 20 20 O 1.42096 * 106.40578 * 203.53581 * 19 17 16 21 21 O 1.42102 * 106.40475 * 336.46038 * 19 17 16 22 22 C 1.76202 * 107.21862 * 89.99923 * 19 17 16 23 23 C 1.38233 * 120.00128 * 269.72868 * 22 19 17 24 24 C 1.38240 * 120.00012 * 179.76483 * 23 22 19 25 25 C 1.38236 * 119.99884 * 0.50456 * 24 23 22 26 26 C 1.38227 * 120.00035 * 359.74837 * 25 24 23 27 27 C 1.38236 * 119.99906 * 89.99808 * 22 19 17 28 28 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 29 29 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 31 31 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 32 32 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 33 33 H 0.97001 * 119.99410 * 354.82986 * 8 7 5 34 34 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 35 35 H 1.08999 * 109.46857 * 299.99948 * 16 14 13 36 36 H 1.09004 * 109.47149 * 59.99646 * 16 14 13 37 37 H 1.08998 * 109.46912 * 90.00418 * 18 17 16 38 38 H 1.09005 * 109.47184 * 209.99930 * 18 17 16 39 39 H 1.08993 * 109.47607 * 330.00472 * 18 17 16 40 40 H 1.08001 * 120.00171 * 359.97438 * 23 22 19 41 41 H 1.08004 * 119.99865 * 180.23138 * 24 23 22 42 42 H 1.08001 * 119.99843 * 179.71915 * 25 24 23 43 43 H 1.08003 * 120.00514 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00182 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9879 -1.2986 8 7 5.4073 0.6859 -1.3141 9 14 3.1041 0.7977 -2.8498 10 1 3.9633 0.2934 -3.9509 11 1 2.0024 -0.1665 -2.6009 12 1 2.5328 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3355 2.6305 0.4598 16 6 0.0609 3.3301 2.6786 17 7 -1.2987 3.8636 2.5647 18 6 -2.4500 2.9979 2.8319 19 16 -1.5342 5.4450 2.1338 20 8 -2.8150 5.8096 2.6294 21 8 -0.3417 6.1367 2.4784 22 6 -1.6481 5.4953 0.3762 23 6 -0.5090 5.6773 -0.3854 24 6 -0.5978 5.7119 -1.7645 25 6 -1.8271 5.5749 -2.3816 26 6 -2.9669 5.3981 -1.6199 27 6 -2.8775 5.3583 -0.2409 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.9549 0.8550 -0.5315 34 1 2.2901 2.1167 1.9977 35 1 0.0997 2.6034 3.4901 36 1 0.7543 4.1449 2.8871 37 1 -2.7112 3.0567 3.8885 38 1 -3.2977 3.3244 2.2294 39 1 -2.1978 1.9687 2.5768 40 1 0.4509 5.7892 0.0968 41 1 0.2928 5.8504 -2.3597 42 1 -1.8971 5.6064 -3.4589 43 1 -3.9275 5.2915 -2.1020 44 1 -3.7682 5.2208 0.3542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183892366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:24 Heat of formation + Delta-G solvation = -76.434629 kcal Electronic energy + Delta-G solvation = -29107.192223 eV Core-core repulsion = 25152.002192 eV Total energy + Delta-G solvation = -3955.190031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.42452 -38.98958 -37.34077 -36.23273 -35.91118 -34.93626 -32.50498 -31.60063 -31.26325 -30.98746 -28.80268 -27.12407 -25.11214 -23.17779 -22.71566 -22.38883 -20.89289 -19.60707 -19.10733 -18.16372 -17.96114 -17.52189 -16.51569 -16.38217 -15.95500 -15.45258 -15.18686 -14.71432 -14.59314 -14.22695 -14.00708 -13.60163 -13.51594 -13.26397 -13.06960 -12.85782 -12.67696 -12.59273 -12.46643 -12.29834 -12.18909 -12.13061 -11.88374 -11.66203 -11.40762 -11.26063 -10.97569 -10.81364 -10.74973 -10.50370 -9.97766 -9.88243 -9.60818 -9.36345 -9.11799 -8.97266 -8.79529 -8.39315 -8.14342 -6.62514 -4.26881 0.31473 0.90442 1.36332 2.75422 3.11946 3.32034 3.37607 3.50759 3.53062 3.77960 3.92169 4.23117 4.35931 4.63140 4.78823 4.88895 4.96811 5.11035 5.16116 5.26404 5.30704 5.32175 5.44586 5.47342 5.67257 5.72739 5.82285 5.92551 6.00818 6.03015 6.07130 6.20816 6.24351 6.31583 6.38829 6.62536 6.72765 6.87300 6.88924 6.97917 7.29923 7.34748 7.59812 8.18830 8.40030 8.65104 8.90091 9.42378 10.78032 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.004503 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.458182 B = 6217.159466 C = 7060.095748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.139 4.139 3 C 0.249 3.751 4 H 0.041 0.959 5 C -0.616 4.616 6 H 0.062 0.938 7 C 0.039 3.961 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.270 1.270 12 H -0.281 1.281 13 N -0.699 5.699 14 C 0.474 3.526 15 O -0.533 6.533 16 C 0.091 3.909 17 N -0.978 5.978 18 C 0.100 3.900 19 S 2.695 3.305 20 O -0.959 6.959 21 O -0.958 6.958 22 C -0.661 4.661 23 C -0.001 4.001 24 C -0.134 4.134 25 C -0.064 4.064 26 C -0.144 4.144 27 C -0.020 4.020 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.394 0.606 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.549 6.570 5.120 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C 0.146 3.854 4 H 0.059 0.941 5 C -0.654 4.654 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.531 5.531 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.196 1.196 12 H -0.207 1.207 13 N -0.348 5.348 14 C 0.256 3.744 15 O -0.411 6.411 16 C -0.039 4.039 17 N -0.814 5.814 18 C -0.045 4.045 19 S 2.786 3.214 20 O -0.950 6.950 21 O -0.949 6.949 22 C -0.749 4.749 23 C -0.020 4.020 24 C -0.153 4.153 25 C -0.082 4.082 26 C -0.162 4.162 27 C -0.039 4.039 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.090 6.693 3.459 17.767 hybrid contribution 0.428 0.006 1.121 1.199 sum -15.663 6.699 4.580 17.640 Atomic orbital electron populations 1.21862 0.97390 0.98709 1.01866 1.22358 0.93764 0.99872 1.01791 1.19023 0.95743 0.88444 0.82235 0.94117 1.22099 0.89743 1.49476 1.04119 0.91994 1.25644 0.97530 0.92428 1.01136 1.70872 1.07088 1.40827 1.34353 0.84117 0.75488 0.77586 0.76010 1.20975 1.19613 1.20733 1.46255 1.14512 1.55866 1.18195 1.21043 0.83122 0.80229 0.89977 1.90698 1.50539 1.59227 1.40670 1.21400 0.83335 1.01524 0.97610 1.56982 1.11354 1.29882 1.83185 1.21461 0.86518 0.95690 1.00859 1.01865 0.73356 0.72128 0.74017 1.93562 1.41434 1.81124 1.78835 1.93567 1.47858 1.70617 1.82840 1.30695 1.00055 1.17671 1.26478 1.20802 0.96658 0.90188 0.94374 1.21276 0.98125 1.01107 0.94787 1.21425 0.92758 0.93975 1.00069 1.21179 0.98794 1.02394 0.93883 1.20768 0.95458 0.92346 0.95369 0.93152 0.95293 0.93240 0.91434 0.93127 0.92045 0.77357 0.87128 0.86383 0.92183 0.91093 0.90574 0.84881 0.85180 0.85560 0.85481 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.53 37.15 0.32 -2.33 16 2 C -0.14 -2.93 5.27 -26.73 -0.14 -3.07 16 3 C 0.25 5.54 1.82 -69.08 -0.13 5.41 16 4 H 0.04 1.00 6.26 -51.93 -0.32 0.67 16 5 C -0.62 -15.89 9.01 -34.44 -0.31 -16.20 16 6 H 0.06 1.68 7.96 -52.49 -0.42 1.26 16 7 C 0.04 1.07 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.12 13.70 55.43 0.76 -25.36 16 9 Si 1.04 24.40 26.27 -169.99 -4.47 19.93 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.92 5.67 56.52 0.32 -5.60 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -12.64 5.03 -54.93 -0.28 -12.92 16 14 C 0.47 7.75 6.49 -10.98 -0.07 7.68 16 15 O -0.53 -9.93 12.95 5.56 0.07 -9.85 16 16 C 0.09 1.12 6.14 -5.20 -0.03 1.09 16 17 N -0.98 -12.19 2.68 -123.05 -0.33 -12.52 16 18 C 0.10 1.02 10.30 59.85 0.62 1.64 16 19 S 2.69 38.11 5.65 -107.50 -0.61 37.50 16 20 O -0.96 -14.50 16.36 -57.17 -0.94 -15.43 16 21 O -0.96 -15.38 15.83 -57.17 -0.90 -16.28 16 22 C -0.66 -9.60 5.63 -39.58 -0.22 -9.83 16 23 C 0.00 -0.01 9.25 -39.58 -0.37 -0.38 16 24 C -0.13 -1.88 10.05 -39.58 -0.40 -2.27 16 25 C -0.06 -0.79 10.05 -39.59 -0.40 -1.18 16 26 C -0.14 -1.71 10.05 -39.58 -0.40 -2.11 16 27 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16 28 H 0.05 1.00 7.88 -51.93 -0.41 0.59 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.89 5.63 -51.93 -0.29 0.59 16 31 H 0.07 1.52 4.74 -51.93 -0.25 1.27 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16 34 H 0.39 6.29 8.53 -40.82 -0.35 5.95 16 35 H 0.11 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.12 1.38 6.91 -51.93 -0.36 1.03 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 39 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.13 2.00 7.61 -52.49 -0.40 1.60 16 41 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.13 1.47 7.62 -52.49 -0.40 1.07 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -33.09 370.18 -9.32 -42.42 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.21 Total: 8.16 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.00 Total: -21.21 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.15 Total: -50.80 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -1.77 Total: -41.57 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -4.47 Total: 19.93 kcal Atomic # 16 Polarization: 38.11 SS G_CDS: -0.61 Total: 37.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.09 -9.32 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183892366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.018 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds