Wall clock time and date at job start Wed Apr 1 2020 00:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00423 * 2 1 4 4 C 1.52995 * 109.47487 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47060 * 305.00180 * 4 3 2 6 6 O 1.42904 * 109.47040 * 65.00209 * 4 3 2 7 7 C 1.52997 * 109.47324 * 184.99966 * 4 3 2 8 8 N 1.46501 * 109.47411 * 180.02562 * 7 4 3 9 9 C 1.34772 * 120.00409 * 180.02562 * 8 7 4 10 10 O 1.21584 * 119.99788 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00174 * 179.97438 * 9 8 7 12 12 C 1.39948 * 119.99940 * 175.49440 * 11 9 8 13 13 C 1.38953 * 120.03365 * 214.85766 * 12 11 9 14 14 C 1.38156 * 120.06617 * 179.74774 * 13 12 11 15 15 C 1.38165 * 120.13893 * 0.54613 * 14 13 12 16 16 C 1.38906 * 120.07048 * 359.70417 * 15 14 13 17 17 O 1.35743 * 120.03831 * 179.97438 * 16 15 14 18 18 C 1.34837 * 117.00135 * 5.36926 * 17 16 15 19 19 H 1.07997 * 119.99411 * 354.95734 * 18 17 16 20 20 C 1.38651 * 119.99987 * 174.96572 * 18 17 16 21 21 N 1.31565 * 119.99388 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00246 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46774 * 90.00398 * 22 20 18 24 24 H 1.48504 * 109.46889 * 210.00167 * 22 20 18 25 25 H 1.48492 * 109.47267 * 330.00550 * 22 20 18 26 26 C 1.38700 * 120.03566 * 35.12774 * 12 11 9 27 27 H 1.09003 * 109.46668 * 299.99917 * 1 2 3 28 28 H 1.09001 * 109.47322 * 59.99429 * 1 2 3 29 29 H 1.09000 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46982 * 300.00446 * 3 2 1 31 31 H 1.09007 * 109.46907 * 60.00097 * 3 2 1 32 32 H 1.09002 * 109.47344 * 60.00149 * 5 4 3 33 33 H 1.09005 * 109.47157 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47454 * 299.99956 * 5 4 3 35 35 H 0.96696 * 114.00196 * 60.00043 * 6 4 3 36 36 H 1.08999 * 109.47121 * 300.00194 * 7 4 3 37 37 H 1.09003 * 109.46839 * 60.00149 * 7 4 3 38 38 H 0.97003 * 119.99582 * 0.02562 * 8 7 4 39 39 H 0.96997 * 119.99990 * 355.49644 * 11 9 8 40 40 H 1.08001 * 119.97019 * 359.97438 * 13 12 11 41 41 H 1.07999 * 119.93397 * 180.27056 * 14 13 12 42 42 H 1.08005 * 119.96707 * 179.72382 * 15 14 13 43 43 H 0.96995 * 119.99691 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.07146 * 359.95683 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 6 4.3429 1.1751 1.1806 6 8 4.2793 1.4279 -1.2220 7 6 4.0873 3.4252 0.1251 8 7 5.5430 3.5903 0.1238 9 6 6.0816 4.8215 0.2258 10 8 5.3594 5.7951 0.3194 11 7 7.4208 4.9734 0.2252 12 6 7.9795 6.2564 0.2360 13 6 9.1612 6.5062 -0.4511 14 6 9.7106 7.7738 -0.4452 15 6 9.0934 8.7941 0.2526 16 6 7.9147 8.5496 0.9457 17 8 7.3092 9.5524 1.6316 18 6 7.8407 10.7856 1.5093 19 1 8.7558 10.9264 0.9534 20 6 7.2123 11.8727 2.0973 21 7 7.7307 13.0760 1.9774 22 14 5.6291 11.6291 3.0582 23 1 5.9512 11.3605 4.4828 24 1 4.7977 12.8558 2.9614 25 1 4.8801 10.4776 2.4945 26 6 7.3573 7.2787 0.9371 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8032 2.2371 -0.8900 31 1 1.8033 2.2371 0.8901 32 1 4.0972 0.1169 1.0910 33 1 5.4260 1.2976 1.1799 34 1 3.9334 1.5655 2.1122 35 1 3.9420 1.8673 -2.0146 36 1 3.6595 3.9700 -0.7165 37 1 3.6777 3.8156 1.0567 38 1 6.1191 2.8135 0.0496 39 1 7.9973 4.1934 0.2173 40 1 9.6488 5.7095 -0.9933 41 1 10.6268 7.9666 -0.9836 42 1 9.5278 9.7830 0.2590 43 1 7.2909 13.8366 2.3884 44 1 6.4407 7.0863 1.4749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265687923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:48 Heat of formation + Delta-G solvation = -97.523625 kcal Electronic energy + Delta-G solvation = -26520.180005 eV Core-core repulsion = 22564.075487 eV Total energy + Delta-G solvation = -3956.104518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77165 -40.64794 -39.55401 -38.29181 -35.56741 -35.39737 -34.43030 -33.22805 -31.25510 -30.16835 -29.93174 -28.36922 -27.43596 -27.09849 -24.00864 -22.95232 -21.98008 -21.64242 -19.95992 -19.74122 -19.19454 -18.33490 -17.18983 -17.02969 -16.83465 -16.56198 -16.46649 -16.23767 -16.08477 -15.71176 -15.68152 -15.48499 -14.96623 -14.74317 -14.52413 -14.35729 -14.28959 -14.18529 -13.90661 -13.39423 -13.31330 -13.14147 -12.96575 -12.95830 -12.79206 -12.72941 -12.49719 -12.11304 -12.06219 -11.60596 -11.34647 -11.19882 -10.99211 -10.86394 -10.82655 -10.23071 -9.35081 -8.88766 -8.60541 -8.50574 -6.22244 0.44967 0.64965 0.66885 1.27467 1.31831 1.49358 1.52511 1.65993 2.03496 2.27207 2.76124 2.94747 3.11473 3.20989 3.35518 3.53383 3.65515 3.72383 4.13881 4.21759 4.32886 4.34987 4.37433 4.41321 4.49156 4.56271 4.65645 4.70189 4.73872 4.86342 4.89881 4.92539 4.95101 5.25040 5.33446 5.36145 5.38755 5.46134 5.69843 5.80770 5.91538 5.95201 6.24765 6.71325 6.84414 6.96755 7.46807 7.61364 8.60848 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.002212 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.231402 B =12656.049177 C =14181.991287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.267 6.267 3 C -0.112 4.112 4 C 0.154 3.846 5 C -0.143 4.143 6 O -0.553 6.553 7 C 0.117 3.883 8 N -0.714 5.714 9 C 0.696 3.304 10 O -0.617 6.617 11 N -0.665 5.665 12 C 0.201 3.799 13 C -0.195 4.195 14 C -0.051 4.051 15 C -0.250 4.250 16 C 0.133 3.867 17 O -0.249 6.249 18 C -0.396 4.396 19 H 0.088 0.912 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.964 3.036 23 H -0.263 1.263 24 H -0.263 1.263 25 H -0.275 1.275 26 C -0.203 4.203 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.391 0.609 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.415 0.585 39 H 0.427 0.573 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.113 0.887 43 H 0.285 0.715 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.077 -30.580 -5.926 32.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.042 6.042 3 C -0.261 4.261 4 C 0.112 3.888 5 C -0.201 4.201 6 O -0.361 6.361 7 C -0.009 4.009 8 N -0.372 5.372 9 C 0.396 3.604 10 O -0.496 6.496 11 N -0.314 5.314 12 C 0.105 3.895 13 C -0.215 4.215 14 C -0.070 4.070 15 C -0.270 4.270 16 C 0.084 3.916 17 O -0.157 6.157 18 C -0.473 4.473 19 H 0.105 0.895 20 C -0.186 4.186 21 N -0.560 5.560 22 Si 0.787 3.213 23 H -0.188 1.188 24 H -0.188 1.188 25 H -0.200 1.200 26 C -0.224 4.224 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.240 0.760 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.267 0.733 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.030 -30.850 -5.259 32.572 hybrid contribution -1.241 1.550 0.050 1.986 sum -10.272 -29.301 -5.210 31.483 Atomic orbital electron populations 1.23509 0.93028 1.07284 1.05609 1.87182 1.08548 1.10362 1.98077 1.24117 0.99281 0.95687 1.07019 1.20931 0.90032 0.90489 0.87377 1.21830 1.01688 1.01109 0.95431 1.86584 1.70220 1.63785 1.15466 1.21899 0.79569 0.96342 1.03091 1.44691 1.07948 1.06037 1.78491 1.16155 0.82203 0.84158 0.77870 1.91000 1.61018 1.39773 1.57792 1.42210 1.05307 1.07041 1.76852 1.17038 0.93685 0.83706 0.95032 1.20895 0.97580 0.98426 1.04646 1.21002 0.99097 0.91244 0.95649 1.21348 0.98208 1.01473 1.05936 1.19384 0.92207 0.88510 0.91533 1.83528 1.53386 1.16332 1.62461 1.20764 1.09518 0.81232 1.35743 0.89477 1.25188 1.01903 0.93335 0.98194 1.69717 1.41807 0.99159 1.45357 0.85315 0.78808 0.78027 0.79152 1.18823 1.18779 1.19953 1.20226 1.03435 0.91365 1.07419 0.89874 0.89825 0.87317 0.88349 0.88183 0.90895 0.91167 0.90198 0.75966 0.91311 0.91114 0.74689 0.73314 0.81744 0.82644 0.86881 0.90573 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 10.76 113.37 1.22 0.25 16 2 S -0.27 -3.37 20.42 -56.49 -1.15 -4.52 16 3 C -0.11 -1.12 5.16 71.98 0.37 -0.74 16 4 C 0.15 1.73 0.73 -10.80 -0.01 1.72 16 5 C -0.14 -1.66 8.35 71.98 0.60 -1.06 16 6 O -0.55 -6.40 12.48 -148.98 -1.86 -8.26 16 7 C 0.12 1.83 4.78 86.38 0.41 2.25 16 8 N -0.71 -12.42 5.15 -478.54 -2.47 -14.89 16 9 C 0.70 19.28 8.41 179.06 1.51 20.78 16 10 O -0.62 -24.39 13.78 -3.98 -0.05 -24.44 16 11 N -0.66 -16.18 5.34 -317.24 -1.70 -17.87 16 12 C 0.20 6.73 6.30 38.13 0.24 6.97 16 13 C -0.19 -5.52 9.96 22.42 0.22 -5.29 16 14 C -0.05 -1.69 10.03 22.23 0.22 -1.47 16 15 C -0.25 -11.16 9.17 22.41 0.21 -10.95 16 16 C 0.13 6.76 6.64 22.56 0.15 6.91 16 17 O -0.25 -14.66 8.58 -22.73 -0.20 -14.85 16 18 C -0.40 -24.34 9.95 67.92 0.68 -23.66 16 19 H 0.09 5.48 5.43 -2.91 -0.02 5.47 16 20 C 0.01 0.74 5.49 84.83 0.47 1.21 16 21 N -0.92 -56.18 13.96 21.61 0.30 -55.87 16 22 Si 0.96 48.26 28.62 68.60 1.96 50.22 16 23 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -14.34 7.11 99.48 0.71 -13.64 16 26 C -0.20 -9.07 8.64 22.51 0.19 -8.88 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.98 6.72 -2.39 -0.02 0.97 16 33 H 0.07 0.74 6.86 -2.38 -0.02 0.73 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.39 2.59 9.05 -74.06 -0.67 1.92 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 4.88 7.21 -92.71 -0.67 4.21 16 39 H 0.43 6.16 8.84 -92.71 -0.82 5.34 16 40 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.11 5.46 5.63 -2.91 -0.02 5.45 16 43 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.11 5.55 6.22 -2.91 -0.02 5.53 16 Total: -1.00 -81.44 379.55 0.23 -81.21 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -1.09 Total: 21.27 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 6.48 Total: -11.98 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -3.86 Total: -88.64 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -2.11 Total: -47.56 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.96 Total: 50.22 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.15 Total: -4.52 kcal Total: -81.44 0.23 -81.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265687923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.310 kcal (2) G-P(sol) polarization free energy of solvation -81.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds