Wall clock time and date at job start Tue Mar 31 2020 23:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47152 * 2 1 4 4 S 1.65605 * 119.99729 * 165.00038 * 3 2 1 5 5 O 1.42101 * 106.40144 * 311.46078 * 4 3 2 6 6 O 1.42099 * 106.39763 * 178.53881 * 4 3 2 7 7 C 1.76196 * 107.21847 * 64.99954 * 4 3 2 8 8 C 1.38364 * 119.85498 * 269.72218 * 7 4 3 9 9 C 1.37956 * 120.14261 * 180.27214 * 8 7 4 10 10 C 1.39576 * 119.85607 * 0.02562 * 9 8 7 11 11 C 1.47848 * 120.14271 * 179.97438 * 10 9 8 12 12 O 1.21548 * 119.99946 * 180.02562 * 11 10 9 13 13 N 1.34776 * 119.99889 * 0.02562 * 11 10 9 14 14 C 1.46501 * 119.99681 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47104 * 35.00048 * 14 13 11 16 16 C 1.50697 * 109.47070 * 154.99786 * 14 13 11 17 17 H 1.08005 * 120.00372 * 0.02562 * 16 14 13 18 18 C 1.37878 * 120.00180 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99688 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00156 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47281 * 89.99914 * 20 18 16 22 22 H 1.48508 * 109.46958 * 210.00119 * 20 18 16 23 23 H 1.48498 * 109.46960 * 329.99595 * 20 18 16 24 24 C 1.52997 * 109.47284 * 275.00029 * 14 13 11 25 25 C 1.53002 * 109.47137 * 64.99942 * 24 14 13 26 26 C 1.39575 * 119.71175 * 359.97438 * 10 9 8 27 27 C 1.37955 * 119.85210 * 0.02562 * 26 10 9 28 28 H 1.09004 * 109.46948 * 59.99515 * 1 2 3 29 29 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47294 * 300.00496 * 1 2 3 31 31 H 1.08998 * 109.47202 * 240.00261 * 2 1 3 32 32 H 1.08993 * 109.46989 * 119.99971 * 2 1 3 33 33 H 0.96999 * 119.99920 * 344.99706 * 3 2 1 34 34 H 1.07993 * 119.92279 * 0.25977 * 8 7 4 35 35 H 1.08000 * 120.06785 * 179.97438 * 9 8 7 36 36 H 0.96994 * 120.00403 * 0.02562 * 13 11 10 37 37 H 0.97003 * 119.99882 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.47309 * 185.00152 * 24 14 13 39 39 H 1.09001 * 109.46930 * 305.00110 * 24 14 13 40 40 H 1.08994 * 109.47193 * 300.00281 * 25 24 14 41 41 H 1.09001 * 109.47073 * 60.00256 * 25 24 14 42 42 H 1.09005 * 109.47115 * 179.97438 * 25 24 14 43 43 H 1.08000 * 120.07334 * 179.97438 * 26 10 9 44 44 H 1.08004 * 119.92775 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8849 0.9832 1.5647 6 8 3.7651 3.1064 0.2512 7 6 4.5894 0.9736 -0.8932 8 6 5.0383 -0.3278 -0.7542 9 6 5.8177 -0.9005 -1.7379 10 6 6.1537 -0.1641 -2.8750 11 6 6.9890 -0.7715 -3.9329 12 8 7.2804 -0.1276 -4.9218 13 7 7.4274 -2.0391 -3.8007 14 6 8.2556 -2.6407 -4.8488 15 1 8.9049 -1.8791 -5.2807 16 6 9.0974 -3.7403 -4.2545 17 1 9.0227 -3.9686 -3.2015 18 6 9.9623 -4.4557 -5.0552 19 7 10.0530 -4.1781 -6.3375 20 14 11.0052 -5.8193 -4.3187 21 1 10.2655 -7.1047 -4.3953 22 1 12.2771 -5.9340 -5.0767 23 1 11.3023 -5.5030 -2.8985 24 6 7.3546 -3.2214 -5.9404 25 6 6.5914 -2.0878 -6.6284 26 6 5.6976 1.1482 -3.0090 27 6 4.9189 1.7091 -2.0179 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.4150 2.1090 -0.2175 34 1 4.7781 -0.8962 0.1264 35 1 6.1677 -1.9163 -1.6280 36 1 7.1946 -2.5530 -3.0118 37 1 10.6612 -4.6817 -6.9009 38 1 7.9655 -3.7462 -6.6748 39 1 6.6452 -3.9180 -5.4935 40 1 5.9805 -1.5630 -5.8941 41 1 7.3007 -1.3912 -7.0753 42 1 5.9498 -2.5015 -7.4065 43 1 5.9544 1.7235 -3.8862 44 1 4.5657 2.7246 -2.1201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273906875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:06 Heat of formation + Delta-G solvation = -117.524442 kcal Electronic energy + Delta-G solvation = -27238.077928 eV Core-core repulsion = 23281.106109 eV Total energy + Delta-G solvation = -3956.971819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34328 -39.53172 -38.40590 -37.02557 -36.99119 -36.75330 -34.49871 -33.34597 -32.25723 -31.94353 -30.57265 -28.99797 -25.84993 -24.76494 -23.93946 -23.60558 -22.21517 -21.31843 -20.60231 -19.67568 -18.98939 -18.38099 -17.77192 -17.47298 -17.14438 -16.56915 -16.37193 -15.98243 -15.86069 -15.64434 -15.44141 -15.14786 -14.66529 -14.60651 -14.41434 -14.10393 -14.05847 -13.70543 -13.47009 -13.28083 -13.19838 -13.18797 -12.93428 -12.71590 -12.68287 -12.54864 -12.42250 -12.36054 -12.20820 -12.09721 -12.02668 -11.62564 -11.08732 -10.90772 -10.57895 -10.55076 -10.43987 -10.19225 -9.72869 -8.18282 -6.35831 -0.82916 -0.56835 0.17392 1.44440 1.45547 1.55445 1.59929 2.04839 2.27868 2.49475 2.56106 2.75892 3.11758 3.22919 3.63756 3.74119 3.81072 4.08124 4.16223 4.25131 4.33694 4.44771 4.47774 4.53268 4.54226 4.70031 4.71351 4.80534 4.88494 4.91098 5.03826 5.14586 5.14807 5.19412 5.25295 5.39706 5.40013 5.48670 5.56422 5.62002 5.75820 5.87160 6.10831 6.13248 6.70615 6.84131 7.27747 7.43403 8.87126 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.002505 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.944074 B =11173.726926 C =11440.456573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -1.105 6.105 4 S 2.723 3.277 5 O -0.977 6.977 6 O -0.983 6.983 7 C -0.663 4.663 8 C -0.025 4.025 9 C -0.108 4.108 10 C -0.084 4.084 11 C 0.533 3.467 12 O -0.576 6.576 13 N -0.693 5.693 14 C 0.277 3.723 15 H 0.001 0.999 16 C -0.550 4.550 17 H 0.073 0.927 18 C 0.017 3.983 19 N -0.914 5.914 20 Si 0.970 3.030 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.097 4.097 27 C -0.025 4.025 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.429 0.571 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.404 0.596 37 H 0.265 0.735 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.026 0.974 42 H 0.047 0.953 43 H 0.138 0.862 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.363 7.157 13.873 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.028 4.028 3 N -0.869 5.869 4 S 2.812 3.188 5 O -0.967 6.967 6 O -0.973 6.973 7 C -0.749 4.749 8 C -0.044 4.044 9 C -0.127 4.127 10 C -0.087 4.087 11 C 0.320 3.680 12 O -0.457 6.457 13 N -0.342 5.342 14 C 0.174 3.826 15 H 0.019 0.981 16 C -0.588 4.588 17 H 0.091 0.909 18 C -0.183 4.183 19 N -0.552 5.552 20 Si 0.794 3.206 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.160 4.160 25 C -0.182 4.182 26 C -0.117 4.117 27 C -0.044 4.044 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.266 0.734 34 H 0.189 0.811 35 H 0.173 0.827 36 H 0.241 0.759 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.156 0.844 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.609 7.806 13.757 25.193 hybrid contribution 0.898 -0.889 -0.784 1.487 sum -18.711 6.918 12.973 23.796 Atomic orbital electron populations 1.21965 0.92708 1.03930 1.03123 1.21565 0.97726 0.80459 1.03009 1.55294 1.27253 1.16033 1.88321 1.00955 0.72665 0.72140 0.73080 1.93567 1.84586 1.74860 1.43657 1.93566 1.85909 1.30675 1.87137 1.31246 1.19768 1.06397 1.17483 1.21175 0.92468 0.92529 0.98231 1.21712 0.97602 1.01063 0.92347 1.20465 0.97433 0.95905 0.94924 1.18744 0.80527 0.82361 0.86376 1.90739 1.59537 1.62891 1.32577 1.46242 1.50970 1.12892 1.24095 1.18455 0.87674 0.91471 0.84980 0.98137 1.21555 1.23384 1.17807 0.96033 0.90889 1.25749 0.97861 0.99611 0.95098 1.70042 1.37648 1.41691 1.05832 0.85379 0.77685 0.78984 0.78503 1.19536 1.21399 1.18944 1.21788 0.97580 0.97157 0.99445 1.21692 0.99012 0.98133 0.99376 1.21477 0.96440 0.93801 0.99963 1.21070 0.93205 0.99914 0.90233 0.91382 0.89878 0.91585 0.90673 0.89854 0.73361 0.81051 0.82713 0.75932 0.92539 0.90801 0.93777 0.93915 0.95488 0.93397 0.84384 0.81756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.05 71.98 0.72 -0.13 16 2 C 0.10 0.80 6.94 86.38 0.60 1.40 16 3 N -1.10 -11.18 6.00 -187.49 -1.12 -12.30 16 4 S 2.72 46.38 5.74 -56.49 -0.32 46.06 16 5 O -0.98 -21.43 16.73 -128.00 -2.14 -23.57 16 6 O -0.98 -22.06 17.27 -128.00 -2.21 -24.27 16 7 C -0.66 -12.64 5.95 22.33 0.13 -12.51 16 8 C -0.03 -0.47 9.50 22.23 0.21 -0.26 16 9 C -0.11 -2.47 9.54 22.53 0.21 -2.25 16 10 C -0.08 -2.50 5.87 -20.09 -0.12 -2.61 16 11 C 0.53 20.88 6.34 86.79 0.55 21.43 16 12 O -0.58 -26.93 13.48 -3.87 -0.05 -26.98 16 13 N -0.69 -27.72 4.97 -448.99 -2.23 -29.95 16 14 C 0.28 13.84 2.24 44.24 0.10 13.94 16 15 H 0.00 0.04 7.58 -2.39 -0.02 0.03 16 16 C -0.55 -28.25 8.73 25.60 0.22 -28.03 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.02 0.90 5.29 84.65 0.45 1.35 16 19 N -0.91 -51.29 11.29 21.45 0.24 -51.04 16 20 Si 0.97 41.14 29.54 68.60 2.03 43.16 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 24 C -0.12 -5.78 5.45 30.59 0.17 -5.62 16 25 C -0.12 -5.49 8.51 71.98 0.61 -4.87 16 26 C -0.10 -2.60 9.60 22.53 0.22 -2.38 16 27 C -0.03 -0.53 9.50 22.23 0.21 -0.32 16 28 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.69 7.75 -2.39 -0.02 0.67 16 33 H 0.43 2.70 8.65 -96.74 -0.84 1.86 16 34 H 0.17 2.26 7.60 -2.91 -0.02 2.23 16 35 H 0.16 2.95 6.41 -2.91 -0.02 2.93 16 36 H 0.40 13.37 6.57 -92.71 -0.61 12.76 16 37 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.07 3.97 5.95 -2.39 -0.01 3.96 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.80 5.64 -2.39 -0.01 1.79 16 41 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 42 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.14 3.83 7.65 -2.91 -0.02 3.81 16 44 H 0.16 2.70 7.61 -2.91 -0.02 2.67 16 Total: -1.00 -73.83 374.02 -1.93 -75.76 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.40 Total: 24.00 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 4.29 Total: -20.85 kcal Atomic # 7 Polarization: -90.19 SS G_CDS: -3.11 Total: -93.30 kcal Atomic # 8 Polarization: -70.43 SS G_CDS: -4.40 Total: -74.83 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 46.38 SS G_CDS: -0.32 Total: 46.06 kcal Total: -73.83 -1.93 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273906875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.762 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds