Wall clock time and date at job start Wed Apr 1 2020 00:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46769 * 252.07765 * 3 2 1 5 5 C 1.36791 * 120.00035 * 96.35155 * 4 3 2 6 6 H 1.08002 * 119.99910 * 166.48750 * 5 4 3 7 7 C 1.39055 * 119.99968 * 346.49300 * 5 4 3 8 8 N 1.31366 * 120.00190 * 331.28684 * 7 5 4 9 9 Si 1.86805 * 120.00235 * 151.29368 * 7 5 4 10 10 H 1.48500 * 109.47259 * 94.98417 * 9 7 5 11 11 H 1.48495 * 109.47195 * 214.98701 * 9 7 5 12 12 H 1.48499 * 109.46890 * 334.98467 * 9 7 5 13 13 C 1.34775 * 119.99876 * 276.34896 * 4 3 2 14 14 O 1.21778 * 120.00341 * 185.46180 * 13 4 3 15 15 C 1.46123 * 120.00310 * 5.46468 * 13 4 3 16 16 N 1.29528 * 125.28638 * 5.22026 * 15 13 4 17 17 N 1.39336 * 113.97812 * 180.02562 * 16 15 13 18 18 C 1.39557 * 125.54249 * 179.97438 * 17 16 15 19 19 C 1.38978 * 120.08416 * 179.72385 * 18 17 16 20 20 C 1.38085 * 119.92386 * 179.79228 * 19 18 17 21 21 C 1.38301 * 120.07559 * 0.48969 * 20 19 18 22 22 C 1.38304 * 120.16380 * 359.74115 * 21 20 19 23 23 C 1.38080 * 120.08286 * 0.02609 * 22 21 20 24 24 C 1.47130 * 108.92253 * 0.02562 * 17 16 15 25 25 H 1.09006 * 110.57816 * 241.30043 * 24 17 16 26 26 C 1.50700 * 110.58442 * 118.55096 * 24 17 16 27 27 N 1.34775 * 120.00254 * 161.45489 * 26 24 17 28 28 O 1.21286 * 119.99871 * 341.45017 * 26 24 17 29 29 C 1.51199 * 125.29084 * 185.22580 * 15 13 4 30 30 H 4.40640 * 5.51320 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.46950 * 132.07715 * 3 2 1 32 32 H 1.09000 * 109.47194 * 12.07907 * 3 2 1 33 33 H 0.96995 * 120.00470 * 180.02562 * 8 7 5 34 34 H 1.08006 * 120.04153 * 0.02562 * 19 18 17 35 35 H 1.07994 * 119.96464 * 180.23193 * 20 19 18 36 36 H 1.07996 * 119.92012 * 179.72501 * 21 20 19 37 37 H 1.07996 * 119.95976 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.04381 * 179.97438 * 23 22 21 39 39 H 0.97004 * 119.99939 * 359.97438 * 27 26 24 40 40 H 0.96998 * 120.00004 * 179.72641 * 27 26 24 41 41 H 1.09002 * 110.52696 * 61.36894 * 29 15 13 42 42 H 1.09000 * 110.52396 * 298.62446 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4259 1.3142 5 6 3.4860 -0.5092 2.2485 6 1 4.0445 -0.2137 3.1245 7 6 3.1248 -1.8401 2.0705 8 7 2.0403 -2.1415 1.3931 9 14 4.1816 -3.1997 2.7946 10 1 3.6378 -3.5978 4.1178 11 1 4.1733 -4.3719 1.8829 12 1 5.5740 -2.7101 2.9586 13 6 3.2364 1.7385 1.6027 14 8 3.7345 2.0935 2.6557 15 6 2.7496 2.7356 0.6519 16 7 2.1188 2.4746 -0.4489 17 7 1.7627 3.6064 -1.1794 18 6 1.0797 3.6046 -2.3965 19 6 0.7764 4.8055 -3.0269 20 6 0.1042 4.7997 -4.2331 21 6 -0.2760 3.6011 -4.8089 22 6 0.0199 2.4043 -4.1821 23 6 0.6959 2.4021 -2.9782 24 6 2.2248 4.8036 -0.4599 25 1 1.3803 5.4371 -0.1881 26 6 3.2157 5.5737 -1.2943 27 7 3.4791 6.8640 -1.0078 28 8 3.7763 5.0322 -2.2236 29 6 2.9039 4.2324 0.8002 30 1 -1.0501 -0.0002 -0.0001 31 1 3.0090 0.6895 -0.7628 32 1 3.0098 -1.0041 -0.2150 33 1 1.7881 -3.0698 1.2692 34 1 1.0694 5.7420 -2.5757 35 1 -0.1285 5.7323 -4.7253 36 1 -0.8055 3.5998 -5.7501 37 1 -0.2783 1.4703 -4.6349 38 1 0.9263 1.4671 -2.4891 39 1 3.0306 7.2972 -0.2648 40 1 4.1199 7.3585 -1.5424 41 1 3.9584 4.5075 0.8231 42 1 2.3973 4.5815 1.7000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281479490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:54 Heat of formation + Delta-G solvation = 104.096035 kcal Electronic energy + Delta-G solvation = -29810.969136 eV Core-core repulsion = 25760.456302 eV Total energy + Delta-G solvation = -4050.512834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84962 -38.93833 -38.74806 -37.56887 -35.24702 -33.92362 -33.04613 -32.21945 -31.26373 -31.06198 -30.32648 -28.66888 -26.52987 -25.33896 -24.44882 -23.01582 -22.28167 -21.21095 -20.28305 -18.75665 -18.01061 -17.88665 -17.45189 -17.06309 -16.61347 -16.14061 -15.82543 -15.14405 -14.92827 -14.70039 -14.50850 -14.32600 -14.03203 -13.93169 -13.31950 -13.21735 -13.07168 -12.87224 -12.86006 -12.36692 -12.29185 -12.04007 -11.79037 -11.60305 -11.36103 -11.08185 -10.89808 -10.65172 -10.43668 -10.20876 -9.91332 -9.87348 -9.44458 -9.32940 -9.22908 -8.86408 -8.77112 -8.64336 -8.05580 -7.16730 -6.61431 -3.94669 1.41230 1.59339 2.09291 2.32697 2.63441 3.08188 3.17798 3.24976 3.31240 3.74804 4.00497 4.06780 4.10197 4.24245 4.27679 4.38723 4.69231 4.71966 4.87198 4.92198 5.08642 5.12904 5.33125 5.45576 5.58844 5.60021 5.64032 5.72886 5.80597 5.86108 6.14886 6.26935 6.48573 6.54596 6.58629 6.69365 6.74890 6.77082 6.96699 7.06532 7.08723 7.34852 7.50743 7.84913 8.05712 8.06746 8.26228 8.92297 8.93963 9.13595 9.74137 10.38108 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.004096 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.247513 B = 6835.019420 C = 8407.170100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.094 4.094 3 C 0.224 3.776 4 N -0.394 5.394 5 C -0.314 4.314 6 H 0.115 0.885 7 C 0.040 3.960 8 N -0.826 5.826 9 Si 0.920 3.080 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.264 1.264 13 C 0.487 3.513 14 O -0.586 6.586 15 C 0.061 3.939 16 N -0.195 5.195 17 N -0.455 5.455 18 C 0.247 3.753 19 C -0.181 4.181 20 C -0.082 4.082 21 C -0.173 4.173 22 C -0.081 4.081 23 C -0.155 4.155 24 C 0.091 3.909 25 H 0.106 0.894 26 C 0.508 3.492 27 N -0.854 5.854 28 O -0.515 6.515 29 C -0.094 4.094 30 H 0.196 0.804 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.275 0.725 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.402 0.598 40 H 0.403 0.597 41 H 0.102 0.898 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 13.496 -8.187 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.095 4.095 3 C 0.101 3.899 4 N -0.109 5.109 5 C -0.443 4.443 6 H 0.133 0.867 7 C -0.170 4.170 8 N -0.460 5.460 9 Si 0.745 3.255 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.188 1.188 13 C 0.276 3.724 14 O -0.471 6.471 15 C -0.131 4.131 16 N -0.004 5.004 17 N -0.253 5.253 18 C 0.149 3.851 19 C -0.204 4.204 20 C -0.101 4.101 21 C -0.192 4.192 22 C -0.100 4.100 23 C -0.177 4.177 24 C -0.019 4.019 25 H 0.124 0.876 26 C 0.290 3.710 27 N -0.419 5.419 28 O -0.388 6.388 29 C -0.135 4.135 30 H 0.213 0.787 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.230 0.770 40 H 0.234 0.766 41 H 0.120 0.880 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.573 12.277 -8.934 15.598 hybrid contribution 0.326 0.518 0.843 1.041 sum -3.247 12.794 -8.091 15.482 Atomic orbital electron populations 1.24101 0.95177 1.06108 1.02624 1.22638 0.93722 0.95405 0.97768 1.18550 0.85143 1.01457 0.84749 1.43724 1.50950 1.04114 1.12083 1.19805 1.33329 0.86459 1.04710 0.86733 1.25425 0.95186 0.98965 0.97406 1.70201 1.17933 1.20266 1.37631 0.86034 0.81021 0.79636 0.78852 1.20098 1.20440 1.18818 1.16214 0.88711 0.81383 0.86087 1.90688 1.51201 1.79341 1.25826 1.25087 0.99173 0.95205 0.93665 1.75507 1.10452 1.09695 1.04790 1.48096 1.57056 1.00178 1.19950 1.17203 0.90931 0.94451 0.82515 1.20425 1.06349 0.95404 0.98178 1.20724 0.97134 0.97942 0.94282 1.20909 1.04723 0.92501 1.01102 1.20941 0.96759 0.98017 0.94277 1.20859 1.02651 0.97232 0.96931 1.22211 0.96814 0.90428 0.92438 0.87648 1.20863 0.83091 0.82276 0.84776 1.43824 1.48183 1.12762 1.37146 1.90806 1.50248 1.68470 1.29325 1.21795 1.03044 0.92577 0.96042 0.78724 0.89928 0.87775 0.91431 0.87285 0.86352 0.86557 0.85976 0.84680 0.76964 0.76612 0.87983 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.56 19.25 29.55 0.57 -4.99 16 2 C -0.09 -2.14 9.97 -37.12 -0.37 -2.51 16 3 C 0.22 5.17 4.75 -6.83 -0.03 5.13 16 4 N -0.39 -9.95 2.60 -119.62 -0.31 -10.26 16 5 C -0.31 -8.32 9.34 -15.04 -0.14 -8.46 16 6 H 0.12 3.15 7.36 -52.49 -0.39 2.76 16 7 C 0.04 0.98 4.70 -17.45 -0.08 0.90 16 8 N -0.83 -20.71 9.87 55.50 0.55 -20.16 16 9 Si 0.92 19.21 29.64 -169.99 -5.04 14.17 16 10 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 13 C 0.49 11.97 7.51 -13.10 -0.10 11.87 16 14 O -0.59 -15.67 16.53 5.12 0.08 -15.58 16 15 C 0.06 1.24 6.90 -80.16 -0.55 0.69 16 16 N -0.20 -3.89 6.59 34.90 0.23 -3.66 16 17 N -0.45 -7.92 3.52 -52.30 -0.18 -8.11 16 18 C 0.25 4.15 6.27 -83.79 -0.53 3.62 16 19 C -0.18 -2.60 8.84 -39.36 -0.35 -2.94 16 20 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 21 C -0.17 -2.15 10.04 -39.53 -0.40 -2.55 16 22 C -0.08 -1.13 10.04 -39.62 -0.40 -1.52 16 23 C -0.16 -2.58 9.64 -39.36 -0.38 -2.96 16 24 C 0.09 1.26 3.20 -68.15 -0.22 1.05 16 25 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 26 C 0.51 6.80 5.52 -10.99 -0.06 6.74 16 27 N -0.85 -6.83 8.87 31.22 0.28 -6.56 16 28 O -0.52 -9.35 16.86 5.55 0.09 -9.26 16 29 C -0.09 -1.45 6.39 -27.05 -0.17 -1.62 16 30 H 0.20 3.49 7.80 -54.09 -0.42 3.07 16 31 H 0.08 1.82 5.98 -51.93 -0.31 1.51 16 32 H 0.10 2.47 6.34 -51.93 -0.33 2.14 16 33 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 34 H 0.11 1.40 6.40 -52.48 -0.34 1.07 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.14 2.46 7.66 -52.48 -0.40 2.05 16 39 H 0.40 1.89 8.83 -40.82 -0.36 1.53 16 40 H 0.40 2.77 8.93 -40.82 -0.36 2.41 16 41 H 0.10 1.51 7.72 -51.93 -0.40 1.11 16 42 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -33.72 364.00 -6.98 -40.70 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.56 Total: 12.23 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.60 Total: 1.01 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.56 Total: -48.75 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.18 Total: -24.84 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.04 Total: 14.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.72 -6.98 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281479490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.796 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds