Wall clock time and date at job start Tue Mar 31 2020 23:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00244 * 2 1 4 4 C 1.52994 * 109.47253 * 125.00038 * 3 2 1 5 5 C 1.52996 * 109.47386 * 180.02562 * 4 3 2 6 6 S 1.81401 * 109.47456 * 180.02562 * 5 4 3 7 7 O 1.42098 * 110.54044 * 68.37441 * 6 5 4 8 8 O 1.42097 * 110.54045 * 291.62687 * 6 5 4 9 9 N 1.65596 * 104.44815 * 179.97438 * 6 5 4 10 10 C 1.39247 * 120.00160 * 65.00390 * 9 6 5 11 11 N 1.32299 * 119.73076 * 359.97258 * 10 9 6 12 12 C 1.32027 * 121.67598 * 180.02562 * 11 10 9 13 13 C 1.38004 * 120.95275 * 0.02562 * 12 11 10 14 14 C 1.38850 * 119.37093 * 359.68294 * 13 12 11 15 15 C 1.38703 * 118.45584 * 0.57986 * 14 13 12 16 16 O 1.36014 * 120.49540 * 179.70984 * 15 14 13 17 17 C 1.42906 * 116.99807 * 359.73017 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47141 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47494 * 119.99680 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99860 * 23 21 19 27 27 H 1.08002 * 120.00295 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00064 * 180.02562 * 1 2 3 29 29 H 1.08006 * 119.99649 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46725 * 5.00116 * 3 2 1 31 31 H 1.09002 * 109.46683 * 245.00401 * 3 2 1 32 32 H 1.09007 * 109.47027 * 60.00013 * 4 3 2 33 33 H 1.09003 * 109.47516 * 300.00368 * 4 3 2 34 34 H 1.09007 * 109.47059 * 59.99993 * 5 4 3 35 35 H 1.09003 * 109.47061 * 300.00607 * 5 4 3 36 36 H 0.96999 * 120.00164 * 244.99831 * 9 6 5 37 37 H 1.08004 * 119.52179 * 180.02562 * 12 11 10 38 38 H 1.08008 * 120.31350 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.77060 * 180.31505 * 14 13 12 40 40 H 1.09000 * 109.47490 * 59.99654 * 17 16 15 41 41 H 1.09001 * 109.47232 * 299.99008 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 44 44 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6583 1.1820 6 16 4.9521 2.6911 2.5825 7 8 5.9964 1.7468 2.3910 8 8 4.2417 2.7587 3.8112 9 7 5.7048 4.1613 2.4637 10 6 4.9716 5.3340 2.6254 11 7 3.6738 5.2675 2.8732 12 6 2.9418 6.3546 3.0326 13 6 3.5075 7.6103 2.9455 14 6 4.8677 7.7284 2.6929 15 6 5.6115 6.5700 2.5240 16 8 6.9459 6.6375 2.2689 17 6 7.5243 7.9413 2.1807 18 6 9.0216 7.8163 1.8916 19 6 9.6315 9.1912 1.7979 20 1 9.0130 10.0665 1.9308 21 6 10.9789 9.3317 1.5415 22 7 11.7320 8.2657 1.3792 23 14 11.7351 11.0358 1.4261 24 1 10.6826 12.0603 1.6456 25 1 12.7905 11.1802 2.4607 26 1 12.3331 11.2218 0.0796 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6212 1.4025 -0.9314 32 1 3.7400 0.5064 1.0920 33 1 2.4773 1.2355 2.1130 34 1 3.0944 3.4846 1.2718 35 1 4.3573 2.7562 0.2505 36 1 6.6565 4.2056 2.2816 37 1 1.8849 6.2598 3.2341 38 1 2.8990 8.4928 3.0780 39 1 5.3348 8.6998 2.6251 40 1 7.3794 8.4677 3.1241 41 1 7.0439 8.4982 1.3762 42 1 9.5017 7.2595 2.6962 43 1 9.1668 7.2897 0.9484 44 1 12.6800 8.3645 1.1992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291890890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:27 Heat of formation + Delta-G solvation = -91.777418 kcal Electronic energy + Delta-G solvation = -26736.510378 eV Core-core repulsion = 22780.655033 eV Total energy + Delta-G solvation = -3955.855344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76578 -39.28445 -38.21895 -37.26110 -37.08687 -36.37035 -35.47408 -33.46983 -32.91872 -32.13756 -30.08278 -27.99019 -27.17432 -24.86454 -24.05685 -23.14373 -22.58366 -20.78577 -20.46002 -19.72884 -18.93740 -18.91612 -18.04339 -17.52182 -17.11181 -17.06248 -16.96736 -16.47596 -16.22532 -15.80341 -15.54428 -15.23502 -15.19034 -14.62718 -14.39477 -14.25091 -13.95137 -13.73422 -13.52958 -13.29427 -13.28065 -13.10430 -13.10179 -12.94935 -12.79533 -12.77546 -12.58961 -12.43451 -12.02083 -11.84673 -11.75266 -11.62268 -11.44633 -11.41730 -10.75220 -10.63188 -10.47555 -10.19818 -8.94750 -8.26594 -6.39721 -0.86357 0.16060 0.25351 1.37744 1.41722 1.42049 1.44124 1.55189 2.13239 2.43918 2.61920 2.80722 3.05693 3.08617 3.19734 3.52115 3.70668 3.83433 3.87781 4.06370 4.12878 4.27008 4.28868 4.32174 4.34335 4.43651 4.50869 4.61494 4.70064 4.75924 4.81120 4.97035 5.09723 5.11395 5.17751 5.20628 5.30994 5.48411 5.51550 5.55790 5.73305 5.78257 5.90417 6.06458 6.38547 6.75977 6.80100 7.30657 8.86356 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.002327 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.112232 B =12027.957672 C =12727.138739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.170 4.170 3 C -0.084 4.084 4 C -0.113 4.113 5 C -0.593 4.593 6 S 2.610 3.390 7 O -0.989 6.989 8 O -0.965 6.965 9 N -1.035 6.035 10 C 0.332 3.668 11 N -0.509 5.509 12 C 0.096 3.904 13 C -0.145 4.145 14 C -0.142 4.142 15 C 0.038 3.962 16 O -0.333 6.333 17 C 0.084 3.916 18 C 0.026 3.974 19 C -0.542 4.542 20 H 0.074 0.926 21 C 0.000 4.000 22 N -0.931 5.931 23 Si 0.974 3.026 24 H -0.255 1.255 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.437 0.563 37 H 0.203 0.797 38 H 0.179 0.821 39 H 0.155 0.845 40 H 0.063 0.937 41 H 0.069 0.931 42 H -0.003 1.003 43 H 0.001 0.999 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.098 -8.127 -2.323 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.189 4.189 3 C -0.122 4.122 4 C -0.153 4.153 5 C -0.727 4.727 6 S 2.709 3.291 7 O -0.979 6.979 8 O -0.955 6.955 9 N -0.783 5.783 10 C 0.099 3.901 11 N -0.226 5.226 12 C -0.060 4.060 13 C -0.166 4.166 14 C -0.169 4.169 15 C -0.014 4.014 16 O -0.246 6.246 17 C 0.009 3.991 18 C -0.011 4.011 19 C -0.580 4.580 20 H 0.092 0.908 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.798 3.202 24 H -0.179 1.179 25 H -0.206 1.206 26 H -0.204 1.204 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.274 0.726 37 H 0.220 0.780 38 H 0.197 0.803 39 H 0.172 0.828 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.016 0.984 43 H 0.019 0.981 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -25.078 -9.857 -1.582 26.992 hybrid contribution 1.770 1.763 -0.626 2.575 sum -23.308 -8.094 -2.208 24.772 Atomic orbital electron populations 1.24061 0.95940 1.02684 1.00319 1.23087 0.96469 0.98671 1.00636 1.20710 0.97713 0.96170 0.97631 1.21400 0.98988 0.93176 1.01703 1.30313 1.15426 1.08305 1.18630 1.05032 0.75095 0.71338 0.77677 1.93581 1.56189 1.60071 1.88084 1.93556 1.75010 1.84821 1.42162 1.53397 1.21024 1.20098 1.83814 1.17408 0.88934 0.83875 0.99903 1.67140 1.02489 1.35791 1.17151 1.22995 1.00877 0.86144 0.95979 1.22270 0.93772 1.00520 1.00005 1.21983 0.96010 0.97755 1.01134 1.19796 0.84939 0.94346 1.02357 1.86056 1.18874 1.33683 1.86011 1.22948 0.94530 0.80756 1.00827 1.18980 0.89210 0.97047 0.95896 1.21434 0.94365 0.92609 1.49613 0.90831 1.26025 0.97878 1.01469 0.94457 1.70124 1.06648 1.31173 1.49071 0.85267 0.78463 0.78790 0.77717 1.17885 1.20616 1.20450 0.88001 0.87617 0.86755 0.90273 0.89741 0.89836 0.90004 0.82727 0.82938 0.72555 0.78011 0.80316 0.82771 0.91831 0.91309 0.98440 0.98059 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 14.32 67.79 0.97 -1.19 16 2 C -0.17 -2.10 9.52 25.65 0.24 -1.86 16 3 C -0.08 -1.03 5.66 29.85 0.17 -0.86 16 4 C -0.11 -1.72 5.20 30.59 0.16 -1.56 16 5 C -0.59 -10.01 5.90 71.98 0.42 -9.59 16 6 S 2.61 68.88 5.10 -56.49 -0.29 68.59 16 7 O -0.99 -31.60 18.08 -127.65 -2.31 -33.90 16 8 O -0.97 -31.21 16.98 -127.65 -2.17 -33.38 16 9 N -1.03 -29.74 5.74 -55.07 -0.32 -30.06 16 10 C 0.33 9.68 7.25 133.11 0.97 10.64 16 11 N -0.51 -12.63 7.47 -192.78 -1.44 -14.07 16 12 C 0.10 1.71 11.17 84.61 0.94 2.65 16 13 C -0.14 -2.44 10.10 22.36 0.23 -2.21 16 14 C -0.14 -3.41 9.14 22.53 0.21 -3.21 16 15 C 0.04 1.17 6.72 22.70 0.15 1.32 16 16 O -0.33 -12.47 9.38 -93.71 -0.88 -13.35 16 17 C 0.08 3.27 4.70 71.98 0.34 3.61 16 18 C 0.03 1.33 5.34 29.85 0.16 1.49 16 19 C -0.54 -29.18 9.11 25.60 0.23 -28.95 16 20 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 21 C 0.00 0.01 5.46 84.65 0.46 0.48 16 22 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 23 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 27 H 0.10 1.01 7.84 -2.91 -0.02 0.99 16 28 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 29 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.08 0.87 7.79 -2.39 -0.02 0.85 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.15 2.39 7.04 -2.39 -0.02 2.37 16 35 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.44 12.88 8.13 -96.75 -0.79 12.09 16 37 H 0.20 1.90 8.06 -2.91 -0.02 1.87 16 38 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.15 3.40 6.44 -2.91 -0.02 3.38 16 40 H 0.06 2.32 7.69 -2.39 -0.02 2.30 16 41 H 0.07 2.44 7.71 -2.39 -0.02 2.42 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -76.32 386.28 0.78 -75.54 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.22 Total: 20.71 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 5.66 Total: -29.23 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -1.47 Total: -99.30 kcal Atomic # 8 Polarization: -75.28 SS G_CDS: -5.35 Total: -80.63 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 68.88 SS G_CDS: -0.29 Total: 68.59 kcal Total: -76.32 0.78 -75.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291890890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.241 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds