Wall clock time and date at job start Tue Mar 31 2020 22:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47265 * 239.99243 * 2 1 3 5 5 C 1.50704 * 109.46560 * 119.99730 * 2 1 3 6 6 C 1.38234 * 120.00277 * 60.00257 * 5 2 1 7 7 C 1.38230 * 119.99885 * 180.02562 * 6 5 2 8 8 C 1.38235 * 120.00326 * 359.97438 * 7 6 5 9 9 S 1.76199 * 120.00342 * 179.70391 * 8 7 6 10 10 O 1.42099 * 106.40466 * 203.54194 * 9 8 7 11 11 O 1.42098 * 106.40181 * 336.46004 * 9 8 7 12 12 N 1.65602 * 107.21888 * 89.99875 * 9 8 7 13 13 C 1.46500 * 119.99756 * 65.00258 * 12 9 8 14 14 C 1.50704 * 109.46838 * 165.00218 * 13 12 9 15 15 O 1.21292 * 120.00090 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99796 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99300 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00637 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99388 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00083 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47018 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47530 * 119.99542 * 21 19 17 24 24 H 1.48503 * 109.46842 * 239.99860 * 21 19 17 25 25 C 1.38234 * 119.99814 * 359.97438 * 8 7 6 26 26 C 1.38235 * 119.99518 * 240.01939 * 5 2 1 27 27 H 1.08997 * 109.47500 * 300.00350 * 1 2 3 28 28 H 1.08999 * 109.46956 * 60.00519 * 1 2 3 29 29 H 1.08994 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47229 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46988 * 299.99613 * 3 2 1 32 32 H 1.08997 * 109.47601 * 59.99131 * 3 2 1 33 33 H 1.09000 * 109.47416 * 300.00969 * 4 2 1 34 34 H 1.08999 * 109.46939 * 60.00228 * 4 2 1 35 35 H 1.08993 * 109.47194 * 180.02562 * 4 2 1 36 36 H 1.07992 * 119.99701 * 359.97438 * 6 5 2 37 37 H 1.08000 * 120.00356 * 179.97438 * 7 6 5 38 38 H 0.97000 * 119.99945 * 245.00458 * 12 9 8 39 39 H 1.09000 * 109.47104 * 284.99861 * 13 12 9 40 40 H 1.08996 * 109.47400 * 45.00315 * 13 12 9 41 41 H 0.96994 * 119.99743 * 359.97438 * 16 14 13 42 42 H 0.97009 * 119.99753 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.00299 * 179.97438 * 25 8 7 44 44 H 1.07997 * 120.00423 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0322 -0.7104 1.2306 6 6 1.6982 -2.0338 1.4494 7 6 2.1585 -2.6852 2.5784 8 6 2.9531 -2.0133 3.4884 9 16 3.5334 -2.8413 4.9314 10 8 3.8127 -1.8298 5.8895 11 8 2.6289 -3.9106 5.1715 12 7 4.9868 -3.5357 4.5472 13 6 6.1354 -2.6914 4.2092 14 6 7.3968 -3.5143 4.2628 15 8 7.3418 -4.6902 4.5549 16 7 8.5861 -2.9433 3.9870 17 6 9.7336 -3.6919 4.0362 18 1 9.6846 -4.7390 4.2963 19 6 10.9597 -3.1034 3.7513 20 7 11.0192 -1.8295 3.4343 21 14 12.5232 -4.1234 3.8176 22 1 12.1877 -5.5197 4.1959 23 1 13.1768 -4.1148 2.4843 24 1 13.4481 -3.5464 4.8261 25 6 3.2880 -0.6902 3.2690 26 6 2.8265 -0.0384 2.1407 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1391 35 1 3.1300 -0.7218 -1.2489 36 1 1.0771 -2.5585 0.7387 37 1 1.8973 -3.7190 2.7496 38 1 5.0777 -4.5014 4.5458 39 1 6.0069 -2.2883 3.2047 40 1 6.2061 -1.8712 4.9236 41 1 8.6300 -2.0029 3.7537 42 1 11.8752 -1.4185 3.2358 43 1 3.9085 -0.1651 3.9801 44 1 3.0876 0.9955 1.9697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352512987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:09 Heat of formation + Delta-G solvation = -124.241674 kcal Electronic energy + Delta-G solvation = -27148.792893 eV Core-core repulsion = 23191.529793 eV Total energy + Delta-G solvation = -3957.263100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91134 -40.26506 -38.39991 -37.38967 -37.01245 -36.33534 -35.38414 -33.32561 -32.23874 -31.28011 -28.77483 -28.27708 -28.11925 -26.16889 -24.59103 -23.50459 -21.42116 -20.79709 -20.18665 -20.05741 -19.25039 -18.69146 -17.43106 -17.27445 -16.79359 -16.55465 -16.31999 -16.04709 -15.83381 -15.72458 -15.32294 -15.20295 -14.69516 -14.42059 -14.23445 -14.16673 -14.03243 -13.81011 -13.59762 -13.30461 -13.22194 -13.13558 -13.06600 -12.92095 -12.84885 -12.54916 -12.52206 -12.42095 -12.21071 -12.11277 -11.90131 -11.57671 -11.54933 -11.47097 -10.72150 -10.43883 -10.14076 -10.05956 -10.02748 -8.49245 -5.98277 -0.71640 -0.21495 0.31716 1.36012 1.43692 1.56993 1.89078 1.94929 2.29660 2.45351 2.74151 3.06397 3.18053 3.31243 3.52158 3.68807 3.93585 3.98227 4.07439 4.07726 4.30472 4.33357 4.37654 4.42569 4.44644 4.71282 4.74222 4.77297 4.78322 4.90003 4.93313 4.97554 5.02891 5.03153 5.07994 5.19718 5.30597 5.38676 5.40754 5.41952 5.56766 5.85558 5.88011 5.99850 6.53025 7.07671 7.48134 8.00985 8.67781 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.002875 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.912085 B = 9735.963585 C =11239.037698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.016 4.016 6 C -0.141 4.141 7 C -0.028 4.028 8 C -0.686 4.686 9 S 2.717 3.283 10 O -0.983 6.983 11 O -0.984 6.984 12 N -1.103 6.103 13 C 0.114 3.886 14 C 0.434 3.566 15 O -0.625 6.625 16 N -0.562 5.562 17 C -0.336 4.336 18 H 0.082 0.918 19 C -0.008 4.008 20 N -0.914 5.914 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.029 4.029 26 C -0.147 4.147 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.424 0.576 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.401 0.599 42 H 0.279 0.721 43 H 0.149 0.851 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.099 8.899 -10.535 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.037 4.037 3 C -0.206 4.206 4 C -0.198 4.198 5 C -0.016 4.016 6 C -0.159 4.159 7 C -0.048 4.048 8 C -0.776 4.776 9 S 2.810 3.190 10 O -0.973 6.973 11 O -0.975 6.975 12 N -0.865 5.865 13 C -0.016 4.016 14 C 0.220 3.780 15 O -0.513 6.513 16 N -0.198 5.198 17 C -0.466 4.466 18 H 0.100 0.900 19 C -0.209 4.209 20 N -0.554 5.554 21 Si 0.816 3.184 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.048 4.048 26 C -0.165 4.165 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.262 0.738 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.235 0.765 42 H 0.089 0.911 43 H 0.167 0.833 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.374 8.400 -9.564 24.024 hybrid contribution 1.074 -0.322 -0.493 1.225 sum -19.300 8.077 -10.057 23.214 Atomic orbital electron populations 1.21903 0.92337 1.02664 1.02667 1.19720 0.96691 0.95676 0.91576 1.22019 1.01462 0.94105 1.02974 1.21916 1.01033 1.00580 0.96227 1.20549 0.92382 0.93682 0.94993 1.21361 1.01746 0.94959 0.97875 1.21113 0.91659 1.00060 0.91932 1.30548 1.16570 1.07612 1.22869 1.00891 0.71478 0.72556 0.74120 1.93539 1.84653 1.60425 1.58727 1.93539 1.62853 1.55747 1.85318 1.55119 1.24592 1.18659 1.88102 1.20958 0.83799 0.92877 1.03945 1.20539 0.85638 0.88510 0.83293 1.90484 1.86894 1.18520 1.55399 1.41851 1.05142 1.12718 1.60103 1.19725 0.84998 0.95381 1.46453 0.90034 1.26034 1.01861 0.97172 0.95834 1.69666 1.28155 1.11516 1.46080 0.84877 0.77163 0.77987 0.78351 1.19835 1.19495 1.19690 1.21214 0.94967 0.91758 0.96891 1.21616 0.99018 1.01889 0.93989 0.92745 0.90658 0.92009 0.92132 0.90917 0.91824 0.92024 0.90654 0.93093 0.83058 0.83735 0.73833 0.86856 0.86894 0.76452 0.91104 0.83333 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.29 71.98 0.60 -0.76 16 2 C -0.04 -0.43 0.85 -52.93 -0.05 -0.47 16 3 C -0.15 -1.50 7.13 71.98 0.51 -0.98 16 4 C -0.14 -1.55 8.29 71.98 0.60 -0.96 16 5 C -0.02 -0.26 4.76 -19.86 -0.09 -0.35 16 6 C -0.14 -2.48 8.71 22.27 0.19 -2.28 16 7 C -0.03 -0.61 9.52 22.27 0.21 -0.40 16 8 C -0.69 -16.53 5.95 22.27 0.13 -16.40 16 9 S 2.72 79.21 5.74 -56.49 -0.32 78.89 16 10 O -0.98 -32.93 16.75 -128.00 -2.14 -35.08 16 11 O -0.98 -32.78 17.28 -128.00 -2.21 -34.99 16 12 N -1.10 -34.85 5.93 -190.79 -1.13 -35.98 16 13 C 0.11 3.75 6.70 85.63 0.57 4.32 16 14 C 0.43 19.79 7.85 87.66 0.69 20.48 16 15 O -0.63 -33.16 15.30 -3.07 -0.05 -33.21 16 16 N -0.56 -27.58 5.29 -306.97 -1.62 -29.20 16 17 C -0.34 -18.45 9.68 84.04 0.81 -17.63 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 20 N -0.91 -47.45 13.05 21.66 0.28 -47.17 16 21 Si 0.99 41.69 29.55 68.60 2.03 43.72 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 C -0.03 -0.62 9.52 22.27 0.21 -0.41 16 26 C -0.15 -2.61 8.98 22.27 0.20 -2.41 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.58 7.39 -2.39 -0.02 0.56 16 30 H 0.06 0.65 7.52 -2.39 -0.02 0.63 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.61 7.51 -2.39 -0.02 0.60 16 33 H 0.06 0.65 7.39 -2.39 -0.02 0.64 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.15 1.91 7.10 -2.91 -0.02 1.89 16 37 H 0.14 2.88 7.62 -2.91 -0.02 2.86 16 38 H 0.42 14.28 7.70 -96.74 -0.75 13.53 16 39 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.11 3.33 7.75 -2.39 -0.02 3.32 16 41 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 42 H 0.28 13.54 8.31 -92.70 -0.77 12.77 16 43 H 0.15 2.90 7.62 -2.91 -0.02 2.88 16 44 H 0.16 2.08 5.90 -2.91 -0.02 2.06 16 Total: -1.00 -72.06 377.66 -0.55 -72.61 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.44 Total: 38.63 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 5.06 Total: -18.23 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -2.47 Total: -112.34 kcal Atomic # 8 Polarization: -98.87 SS G_CDS: -4.40 Total: -103.27 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 79.21 SS G_CDS: -0.32 Total: 78.89 kcal Total: -72.06 -0.55 -72.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352512987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.631 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds