Wall clock time and date at job start Tue Mar 31 2020 23:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47116 * 2 1 4 4 S 1.65602 * 120.00014 * 164.99828 * 3 2 1 5 5 O 1.42098 * 106.40437 * 311.46568 * 4 3 2 6 6 O 1.42098 * 106.40331 * 178.54266 * 4 3 2 7 7 C 1.76202 * 107.21559 * 65.00293 * 4 3 2 8 8 C 1.38372 * 119.92970 * 269.97704 * 7 4 3 9 9 C 1.38340 * 120.29346 * 179.97438 * 8 7 4 10 10 C 1.37977 * 120.14249 * 359.74790 * 9 8 7 11 11 C 1.39551 * 119.85248 * 0.52802 * 10 9 8 12 12 C 1.47854 * 120.14384 * 179.74750 * 11 10 9 13 13 O 1.21548 * 119.99982 * 179.72596 * 12 11 10 14 14 N 1.34776 * 119.99892 * 359.72333 * 12 11 10 15 15 C 1.46502 * 120.00080 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.46581 * 35.00344 * 15 14 12 17 17 C 1.50700 * 109.46969 * 154.99546 * 15 14 12 18 18 H 1.07998 * 120.00370 * 0.02562 * 17 15 14 19 19 C 1.37878 * 119.99824 * 180.02562 * 17 15 14 20 20 N 1.31523 * 120.00027 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99983 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47448 * 90.00055 * 21 19 17 23 23 H 1.48502 * 109.46950 * 209.99961 * 21 19 17 24 24 H 1.48502 * 109.46954 * 329.99800 * 21 19 17 25 25 C 1.52992 * 109.47005 * 275.00208 * 15 14 12 26 26 C 1.52997 * 109.47482 * 64.99872 * 25 15 14 27 27 C 1.37940 * 119.92374 * 90.00220 * 7 4 3 28 28 H 1.08996 * 109.46799 * 59.99553 * 1 2 3 29 29 H 1.09000 * 109.46634 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46579 * 299.99743 * 1 2 3 31 31 H 1.09007 * 109.47031 * 240.00431 * 2 1 3 32 32 H 1.08994 * 109.47490 * 120.00713 * 2 1 3 33 33 H 0.97001 * 120.00324 * 345.00351 * 3 2 1 34 34 H 1.08001 * 119.85476 * 359.97438 * 8 7 4 35 35 H 1.07998 * 119.92660 * 179.97438 * 9 8 7 36 36 H 1.08007 * 120.07398 * 180.25191 * 10 9 8 37 37 H 0.97001 * 120.00217 * 359.97438 * 14 12 11 38 38 H 0.96993 * 119.99651 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.47103 * 304.99625 * 25 15 14 40 40 H 1.08998 * 109.46862 * 185.00437 * 25 15 14 41 41 H 1.09002 * 109.47153 * 59.99783 * 26 25 15 42 42 H 1.09001 * 109.46832 * 299.99974 * 26 25 15 43 43 H 1.09004 * 109.47261 * 179.97438 * 26 25 15 44 44 H 1.07998 * 120.07525 * 0.02562 * 27 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8850 0.9832 1.5647 6 8 3.7651 3.1064 0.2513 7 6 4.5895 0.9737 -0.8933 8 6 5.0348 -0.3294 -0.7583 9 6 5.8113 -0.9074 -1.7467 10 6 6.1423 -0.1884 -2.8769 11 6 5.7012 1.1282 -3.0165 12 6 6.0568 1.9064 -4.2224 13 8 5.6670 3.0513 -4.3436 14 7 6.8131 1.3463 -5.1871 15 6 7.1650 2.1172 -6.3821 16 1 7.3107 3.1626 -6.1102 17 6 8.4378 1.5706 -6.9757 18 1 8.9347 0.7326 -6.5097 19 6 8.9680 2.1404 -8.1138 20 7 8.3632 3.1613 -8.6811 21 14 10.5453 1.4625 -8.8500 22 1 10.2157 0.4011 -9.8348 23 1 11.2843 2.5565 -9.5300 24 1 11.3898 0.8911 -7.7704 25 6 6.0360 2.0098 -7.4090 26 6 4.7761 2.6768 -6.8535 27 6 4.9184 1.7056 -2.0152 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.4151 2.1090 -0.2174 34 1 4.7751 -0.8979 0.1225 35 1 6.1561 -1.9247 -1.6351 36 1 6.7452 -0.6420 -3.6497 37 1 7.1245 0.4328 -5.0902 38 1 8.7364 3.5624 -9.4815 39 1 5.8304 0.9592 -7.6144 40 1 6.3348 2.5085 -8.3310 41 1 4.9817 3.7274 -6.6481 42 1 4.4774 2.1780 -5.9315 43 1 3.9719 2.6007 -7.5853 44 1 4.5709 2.7228 -2.1190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358052996.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:18 Heat of formation + Delta-G solvation = -118.586655 kcal Electronic energy + Delta-G solvation = -27454.114947 eV Core-core repulsion = 23497.097067 eV Total energy + Delta-G solvation = -3957.017880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31291 -39.51428 -38.43442 -37.04353 -36.98401 -36.77404 -34.49004 -33.32811 -32.27616 -31.93087 -30.58878 -28.97696 -25.62171 -24.73622 -24.17063 -23.68050 -22.21247 -21.37356 -20.63289 -19.80122 -18.58485 -18.31160 -17.56472 -17.22204 -17.19105 -17.04126 -16.37528 -16.29574 -15.97133 -15.60889 -15.43332 -15.09596 -14.85477 -14.61056 -14.34224 -14.10580 -13.75066 -13.49904 -13.36509 -13.30804 -13.25000 -13.19178 -12.93118 -12.79871 -12.73128 -12.67542 -12.56953 -12.41456 -12.19528 -12.09621 -11.90182 -11.62557 -11.08268 -10.87487 -10.59325 -10.55351 -10.45720 -10.18325 -9.69555 -8.17826 -6.35611 -0.72514 -0.42858 -0.09140 1.44247 1.45373 1.55426 1.70982 2.02436 2.29570 2.50457 2.55138 2.75757 3.12022 3.25238 3.68457 3.73667 3.91071 4.03579 4.06210 4.26106 4.32423 4.44645 4.47259 4.51589 4.54001 4.68161 4.72411 4.73181 4.89143 5.03491 5.08692 5.12685 5.13315 5.17114 5.23702 5.38896 5.40236 5.50842 5.56982 5.64461 5.76546 5.88614 6.04873 6.13543 6.71258 6.87494 7.29497 7.46660 8.87742 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.002606 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.777782 B =10742.904283 C =11091.368547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -1.108 6.108 4 S 2.718 3.282 5 O -0.971 6.971 6 O -0.994 6.994 7 C -0.687 4.687 8 C 0.000 4.000 9 C -0.130 4.130 10 C -0.031 4.031 11 C -0.164 4.164 12 C 0.537 3.463 13 O -0.584 6.584 14 N -0.695 5.695 15 C 0.277 3.723 16 H -0.002 1.002 17 C -0.548 4.548 18 H 0.074 0.926 19 C 0.016 3.984 20 N -0.915 5.915 21 Si 0.971 3.029 22 H -0.270 1.270 23 H -0.289 1.289 24 H -0.264 1.264 25 C -0.120 4.120 26 C -0.125 4.125 27 C 0.017 3.983 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.427 0.573 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.156 0.844 37 H 0.404 0.596 38 H 0.265 0.735 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 -14.586 17.047 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 N -0.872 5.872 4 S 2.808 3.192 5 O -0.961 6.961 6 O -0.985 6.985 7 C -0.774 4.774 8 C -0.019 4.019 9 C -0.148 4.148 10 C -0.050 4.050 11 C -0.168 4.168 12 C 0.325 3.675 13 O -0.466 6.466 14 N -0.344 5.344 15 C 0.174 3.826 16 H 0.016 0.984 17 C -0.586 4.586 18 H 0.092 0.908 19 C -0.185 4.185 20 N -0.553 5.553 21 Si 0.796 3.204 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.159 4.159 26 C -0.183 4.183 27 C -0.004 4.004 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.264 0.736 34 H 0.193 0.807 35 H 0.200 0.800 36 H 0.173 0.827 37 H 0.240 0.760 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.043 0.957 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.165 -13.360 17.532 25.674 hybrid contribution 0.916 0.197 -1.584 1.840 sum -12.249 -13.164 15.948 24.034 Atomic orbital electron populations 1.21974 0.92777 1.04092 1.02940 1.21605 0.97692 0.80179 1.03184 1.55352 1.27251 1.16281 1.88357 1.01002 0.72823 0.72080 0.73313 1.93554 1.84629 1.74697 1.43241 1.93575 1.85961 1.31647 1.87269 1.30897 1.22099 1.07463 1.16940 1.21578 0.90593 0.91141 0.98634 1.21714 0.98398 1.02343 0.92378 1.22023 0.93426 0.91229 0.98300 1.20155 1.04258 0.96637 0.95758 1.18714 0.78786 0.86503 0.83544 1.90740 1.55854 1.19790 1.80193 1.46174 1.50652 1.17532 1.20035 1.18441 0.92942 0.90555 0.80668 0.98401 1.21552 1.08338 1.17537 1.11222 0.90790 1.25781 1.00791 0.94903 0.96990 1.70052 1.40772 1.23546 1.20950 0.85358 0.78691 0.77825 0.78540 1.19492 1.21463 1.18864 1.21781 0.94141 0.98783 1.01192 1.21696 0.97750 0.99460 0.99351 1.20892 0.90756 0.98724 0.90009 0.91819 0.89354 0.91686 0.90502 0.89368 0.73646 0.80717 0.79960 0.82682 0.75974 0.92564 0.93703 0.90837 0.95653 0.93935 0.93359 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.06 71.98 0.72 -0.34 16 2 C 0.10 0.93 6.94 86.38 0.60 1.53 16 3 N -1.11 -15.50 6.00 -187.48 -1.12 -16.63 16 4 S 2.72 57.92 5.74 -56.49 -0.32 57.60 16 5 O -0.97 -22.86 16.74 -128.00 -2.14 -25.00 16 6 O -0.99 -29.74 17.27 -128.00 -2.21 -31.95 16 7 C -0.69 -15.28 5.94 22.23 0.13 -15.14 16 8 C 0.00 0.00 9.52 22.33 0.21 0.21 16 9 C -0.13 -1.91 10.03 22.23 0.22 -1.69 16 10 C -0.03 -0.66 9.54 22.52 0.21 -0.45 16 11 C -0.16 -5.06 5.87 -20.09 -0.12 -5.18 16 12 C 0.54 21.93 6.34 86.79 0.55 22.48 16 13 O -0.58 -28.82 13.48 -3.87 -0.05 -28.88 16 14 N -0.69 -28.32 4.97 -448.98 -2.23 -30.56 16 15 C 0.28 14.09 2.24 44.24 0.10 14.19 16 16 H 0.00 -0.12 7.58 -2.39 -0.02 -0.13 16 17 C -0.55 -28.41 8.73 25.60 0.22 -28.19 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 19 C 0.02 0.83 5.29 84.65 0.45 1.27 16 20 N -0.92 -51.95 11.30 21.45 0.24 -51.71 16 21 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C -0.12 -5.85 5.45 30.59 0.17 -5.68 16 26 C -0.13 -5.66 8.51 71.98 0.61 -5.05 16 27 C 0.02 0.49 9.07 22.53 0.20 0.70 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.09 0.72 7.75 -2.39 -0.02 0.70 16 33 H 0.43 4.92 8.65 -96.75 -0.84 4.08 16 34 H 0.18 1.68 7.60 -2.91 -0.02 1.66 16 35 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.16 2.68 6.41 -2.91 -0.02 2.66 16 37 H 0.40 13.37 6.57 -92.71 -0.61 12.76 16 38 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 41 H 0.02 1.24 7.84 -2.39 -0.02 1.22 16 42 H 0.04 1.85 5.65 -2.39 -0.01 1.84 16 43 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.13 4.34 7.20 -2.91 -0.02 4.32 16 Total: -1.00 -78.36 374.06 -1.93 -80.29 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.40 Total: 24.81 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.29 Total: -21.35 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -3.11 Total: -98.89 kcal Atomic # 8 Polarization: -81.42 SS G_CDS: -4.41 Total: -85.82 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 57.92 SS G_CDS: -0.32 Total: 57.60 kcal Total: -78.36 -1.93 -80.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358052996.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.296 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds