Wall clock time and date at job start Tue Mar 31 2020 23:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47413 * 2 1 4 4 H 1.09005 * 109.47189 * 54.99719 * 3 2 1 5 5 C 1.50694 * 109.47453 * 175.00107 * 3 2 1 6 6 H 1.08001 * 120.00329 * 119.99598 * 5 3 2 7 7 C 1.37879 * 119.99654 * 300.00211 * 5 3 2 8 8 N 1.31508 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99962 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46951 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47427 * 119.99525 * 9 7 5 12 12 H 1.48503 * 109.47407 * 239.99868 * 9 7 5 13 13 N 1.46506 * 109.47182 * 295.00131 * 3 2 1 14 14 C 1.34773 * 119.99969 * 84.72073 * 13 3 2 15 15 O 1.21281 * 120.00220 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00080 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.46762 * 300.00389 * 16 14 13 18 18 C 1.53004 * 109.46763 * 60.00061 * 16 14 13 19 19 N 1.46500 * 109.47299 * 180.02562 * 16 14 13 20 20 S 1.65600 * 119.99613 * 145.00111 * 19 16 14 21 21 O 1.42105 * 106.39950 * 178.54388 * 20 19 16 22 22 O 1.42102 * 106.40321 * 311.45953 * 20 19 16 23 23 C 1.76196 * 107.22055 * 65.00060 * 20 19 16 24 24 C 1.38228 * 119.99997 * 269.72446 * 23 20 19 25 25 C 1.38238 * 119.99781 * 179.76412 * 24 23 20 26 26 C 1.38231 * 120.00215 * 0.51054 * 25 24 23 27 27 C 1.38235 * 119.99736 * 359.74259 * 26 25 24 28 28 C 1.38238 * 119.99596 * 89.99482 * 23 20 19 29 29 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46810 * 300.00543 * 1 2 3 31 31 H 1.09007 * 109.47086 * 59.99509 * 1 2 3 32 32 H 1.08998 * 109.47116 * 239.99782 * 2 1 3 33 33 H 1.08996 * 109.46851 * 119.99791 * 2 1 3 34 34 H 0.97000 * 120.00744 * 180.02562 * 8 7 5 35 35 H 0.97005 * 119.99811 * 265.00126 * 13 3 2 36 36 H 1.09000 * 109.47019 * 299.99778 * 18 16 14 37 37 H 1.08995 * 109.46910 * 60.00609 * 18 16 14 38 38 H 1.09002 * 109.46848 * 180.02562 * 18 16 14 39 39 H 0.96994 * 119.99944 * 325.00729 * 19 16 14 40 40 H 1.08001 * 120.00080 * 359.97438 * 24 23 20 41 41 H 1.08006 * 119.99709 * 180.22852 * 25 24 23 42 42 H 1.08000 * 120.00051 * 179.72416 * 26 25 24 43 43 H 1.08001 * 120.00362 * 179.97438 * 27 26 25 44 44 H 1.07993 * 120.00295 * 0.02562 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5988 1.5440 0.1931 11 1 6.4000 1.6155 2.6091 12 1 6.4962 -0.5192 1.4627 13 7 1.6525 2.0975 -1.2518 14 6 0.4332 2.6595 -1.3689 15 8 -0.3431 2.6234 -0.4378 16 6 0.0342 3.3328 -2.6568 17 1 0.7228 4.1512 -2.8673 18 6 0.0844 2.3172 -3.8000 19 7 -1.3267 3.8604 -2.5309 20 16 -1.7377 5.2782 -3.2814 21 8 -3.1133 5.4971 -2.9998 22 8 -0.7193 6.2143 -2.9563 23 6 -1.6232 5.0015 -5.0178 24 6 -0.4333 5.2419 -5.6789 25 6 -0.3421 5.0202 -7.0404 26 6 -1.4437 4.5681 -7.7424 27 6 -2.6351 4.3327 -7.0821 28 6 -2.7249 4.5494 -5.7197 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0605 2.9502 35 1 2.2720 2.1231 -1.9978 36 1 1.0972 1.9251 -3.8935 37 1 -0.6041 1.4989 -3.5894 38 1 -0.2037 2.8043 -4.7316 39 1 -1.9869 3.3793 -2.0080 40 1 0.4260 5.5997 -5.1313 41 1 0.5887 5.2045 -7.5563 42 1 -1.3737 4.3992 -8.8068 43 1 -3.4960 3.9799 -7.6305 44 1 -3.6559 4.3661 -5.2040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358061572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:58 Heat of formation + Delta-G solvation = -114.829888 kcal Electronic energy + Delta-G solvation = -28036.469869 eV Core-core repulsion = 24079.614895 eV Total energy + Delta-G solvation = -3956.854974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.95001 -40.02054 -38.44868 -37.30433 -37.04828 -36.21865 -34.32442 -32.85049 -32.26577 -31.96635 -30.79651 -28.79042 -25.60532 -24.61612 -24.17580 -23.67128 -22.01699 -21.06547 -20.69668 -19.47258 -19.16248 -18.42016 -17.64575 -17.13975 -16.95736 -16.86781 -16.38432 -16.32426 -15.74947 -15.52564 -15.42679 -14.68851 -14.62521 -14.50793 -14.43119 -14.15503 -13.61795 -13.52404 -13.32764 -13.29765 -13.24759 -13.22575 -13.17335 -12.97083 -12.83677 -12.68454 -12.61309 -12.17323 -12.11002 -12.01467 -11.77451 -11.54706 -11.01487 -10.95861 -10.55781 -10.44415 -10.29070 -9.98167 -9.61524 -8.13907 -6.30696 -0.74649 -0.16463 0.35846 1.45457 1.47512 1.58469 1.80038 1.85768 2.37236 2.52180 2.61620 2.77452 3.16099 3.25046 3.68936 3.88864 3.96787 4.00399 4.10343 4.16279 4.31876 4.44539 4.49519 4.53459 4.61313 4.74165 4.76338 4.81066 4.99566 5.01066 5.10215 5.14073 5.23841 5.30975 5.32663 5.44152 5.47415 5.59303 5.64088 5.83226 5.89475 5.91534 5.95898 6.20488 6.78066 6.98436 7.36048 7.57484 8.91398 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.002906 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.381026 B = 9634.303695 C =10026.256023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.288 1.288 12 H -0.280 1.280 13 N -0.698 5.698 14 C 0.496 3.504 15 O -0.578 6.578 16 C 0.134 3.866 17 H 0.128 0.872 18 C -0.164 4.164 19 N -1.098 6.098 20 S 2.707 3.293 21 O -0.987 6.987 22 O -0.988 6.988 23 C -0.677 4.677 24 C -0.035 4.035 25 C -0.140 4.140 26 C -0.059 4.059 27 C -0.143 4.143 28 C -0.034 4.034 29 H 0.043 0.957 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.263 0.737 35 H 0.406 0.594 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.425 0.575 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.156 0.844 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 5.264 -24.393 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.182 1.182 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.348 5.348 14 C 0.281 3.719 15 O -0.458 6.458 16 C 0.023 3.977 17 H 0.145 0.855 18 C -0.223 4.223 19 N -0.858 5.858 20 S 2.801 3.199 21 O -0.977 6.977 22 O -0.978 6.978 23 C -0.768 4.768 24 C -0.055 4.055 25 C -0.158 4.158 26 C -0.077 4.077 27 C -0.161 4.161 28 C -0.053 4.053 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.263 0.737 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.179 0.821 43 H 0.174 0.826 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.476 6.022 -23.194 25.418 hybrid contribution 0.830 -0.598 0.387 1.094 sum -7.646 5.424 -22.808 24.659 Atomic orbital electron populations 1.21700 0.96979 0.99089 1.00420 1.21764 0.93736 0.98989 1.01385 1.18386 0.93619 0.89265 0.81345 0.98545 1.21631 0.91478 1.38585 1.06651 0.90746 1.25750 1.03109 0.94526 0.95136 1.70054 1.36919 1.38550 1.09870 0.85358 0.79435 0.77726 0.78170 1.18214 1.21434 1.20549 1.46193 1.15100 1.55817 1.17677 1.21010 0.82272 0.78852 0.89759 1.90662 1.52458 1.60733 1.41939 1.20809 0.83981 0.99265 0.93661 0.85471 1.22330 1.04876 0.98619 0.96430 1.55183 1.18752 1.45037 1.66825 1.01110 0.72209 0.72101 0.74470 1.93545 1.34465 1.84391 1.85302 1.93551 1.60222 1.60247 1.83826 1.30441 1.02692 1.19485 1.24192 1.21199 0.95294 0.92676 0.96324 1.21668 1.00741 0.99892 0.93535 1.21955 0.91970 0.92021 1.01752 1.21655 0.99803 1.00857 0.93809 1.21144 0.96482 0.91807 0.95872 0.93768 0.95864 0.93124 0.93642 0.91307 0.92733 0.75807 0.88856 0.91404 0.89242 0.73750 0.83781 0.82385 0.82082 0.82606 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.51 71.98 0.61 -4.74 16 2 C -0.12 -5.65 5.45 30.59 0.17 -5.48 16 3 C 0.28 13.65 2.24 44.24 0.10 13.75 16 4 H 0.00 -0.20 7.59 -2.38 -0.02 -0.22 16 5 C -0.55 -27.85 8.73 25.60 0.22 -27.63 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -51.69 11.29 21.45 0.24 -51.45 16 9 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 10 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 N -0.70 -26.51 4.92 -446.09 -2.19 -28.70 16 14 C 0.50 18.08 5.79 87.66 0.51 18.59 16 15 O -0.58 -25.89 13.09 -3.03 -0.04 -25.93 16 16 C 0.13 3.39 3.32 44.25 0.15 3.54 16 17 H 0.13 2.82 7.50 -2.39 -0.02 2.81 16 18 C -0.16 -2.93 9.41 71.98 0.68 -2.25 16 19 N -1.10 -28.21 5.27 -172.50 -0.91 -29.12 16 20 S 2.71 69.25 5.72 -56.49 -0.32 68.93 16 21 O -0.99 -30.16 17.28 -128.00 -2.21 -32.37 16 22 O -0.99 -30.95 16.61 -128.00 -2.13 -33.08 16 23 C -0.68 -12.74 5.06 22.27 0.11 -12.63 16 24 C -0.04 -0.55 8.60 22.27 0.19 -0.36 16 25 C -0.14 -1.48 10.05 22.27 0.22 -1.25 16 26 C -0.06 -0.51 10.05 22.27 0.22 -0.29 16 27 C -0.14 -1.56 10.05 22.27 0.22 -1.33 16 28 C -0.03 -0.54 9.52 22.27 0.21 -0.33 16 29 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.02 1.09 7.84 -2.39 -0.02 1.07 16 31 H 0.05 2.03 5.62 -2.38 -0.01 2.01 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 3.70 5.95 -2.39 -0.01 3.69 16 34 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.41 12.49 7.95 -92.70 -0.74 11.76 16 36 H 0.09 1.41 7.56 -2.39 -0.02 1.40 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.22 6.18 -2.39 -0.01 1.21 16 39 H 0.43 11.30 8.21 -96.75 -0.79 10.50 16 40 H 0.14 2.09 7.61 -2.91 -0.02 2.07 16 41 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 42 H 0.16 0.38 8.06 -2.91 -0.02 0.35 16 43 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.14 2.14 7.62 -2.91 -0.02 2.11 16 Total: -1.00 -75.80 371.39 -1.96 -77.76 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.49 Total: 29.79 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 4.07 Total: -19.19 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -2.86 Total: -109.27 kcal Atomic # 8 Polarization: -87.00 SS G_CDS: -4.38 Total: -91.37 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 69.25 SS G_CDS: -0.32 Total: 68.93 kcal Total: -75.80 -1.96 -77.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358061572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.070 kcal (2) G-P(sol) polarization free energy of solvation -75.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds