Wall clock time and date at job start Tue Mar 31 2020 23:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47182 * 2 1 4 4 C 1.50704 * 109.46720 * 119.99559 * 2 1 3 5 5 O 1.21273 * 120.00444 * 0.02562 * 4 2 1 6 6 N 1.34777 * 119.99678 * 180.02562 * 4 2 1 7 7 C 1.46493 * 119.99998 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47513 * 179.97438 * 7 6 4 9 9 N 1.46494 * 109.47693 * 179.97438 * 8 7 6 10 10 S 1.65597 * 120.00241 * 164.72209 * 9 8 7 11 11 O 1.42103 * 106.40620 * 178.54272 * 10 9 8 12 12 O 1.42100 * 106.40630 * 311.46546 * 10 9 8 13 13 C 1.76208 * 107.21734 * 65.00320 * 10 9 8 14 14 C 1.38632 * 119.74525 * 269.73112 * 13 10 9 15 15 C 1.37628 * 120.24207 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74460 * 0.56531 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68162 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48496 * 109.47170 * 89.99474 * 21 19 17 23 23 H 1.48494 * 109.47127 * 209.99890 * 21 19 17 24 24 H 1.48504 * 109.46764 * 329.99426 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70628 * 16 15 14 26 26 C 1.37620 * 119.73960 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47332 * 300.00531 * 1 2 3 28 28 H 1.08998 * 109.47001 * 60.00551 * 1 2 3 29 29 H 1.08997 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47332 * 239.99468 * 2 1 3 31 31 H 1.09008 * 109.46737 * 299.99649 * 3 2 1 32 32 H 1.08994 * 109.47008 * 59.99345 * 3 2 1 33 33 H 1.08993 * 109.47502 * 179.97438 * 3 2 1 34 34 H 0.97000 * 120.00173 * 359.97438 * 6 4 2 35 35 H 1.09001 * 109.47789 * 59.99888 * 7 6 4 36 36 H 1.09002 * 109.47195 * 299.99643 * 7 6 4 37 37 H 1.09011 * 109.47083 * 59.99215 * 8 7 6 38 38 H 1.08997 * 109.47087 * 300.00383 * 8 7 6 39 39 H 0.96999 * 119.99814 * 345.00344 * 9 8 7 40 40 H 1.07992 * 119.88185 * 359.96919 * 14 13 10 41 41 H 1.07997 * 120.12556 * 180.27286 * 15 14 13 42 42 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 43 43 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 44 44 H 1.08005 * 119.87252 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.2442 -1.1716 2.0287 6 7 3.3574 -0.8330 1.4442 7 6 3.8457 -1.5240 2.6400 8 6 5.3757 -1.5240 2.6402 9 7 5.8640 -2.2144 3.8364 10 16 7.4443 -2.7013 3.9243 11 8 7.6096 -3.2991 5.2028 12 8 7.7236 -3.3796 2.7072 13 6 8.4391 -1.2469 3.9228 14 6 8.8869 -0.7211 2.7207 15 6 9.6597 0.4177 2.7073 16 6 10.0047 1.0416 3.9204 17 6 10.8037 2.2081 3.9193 18 1 11.3883 2.4632 4.7908 19 6 10.8368 3.0325 2.7888 20 7 9.8964 2.9400 1.8840 21 14 12.2239 4.2647 2.5716 22 1 13.3422 3.6259 1.8323 23 1 11.7295 5.4367 1.8055 24 1 12.7027 4.7110 3.9046 25 6 9.5492 0.4958 5.1348 26 6 8.7729 -0.6406 5.1239 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4426 0.0005 34 1 3.9877 -0.4645 0.8056 35 1 3.4828 -2.5519 2.6395 36 1 3.4819 -1.0108 3.5302 37 1 5.7390 -0.4962 2.6405 38 1 5.7391 -2.0374 1.7501 39 1 5.2606 -2.3900 4.5753 40 1 8.6252 -1.2045 1.7912 41 1 10.0038 0.8282 1.7695 42 1 9.9195 3.5111 1.1003 43 1 9.8084 0.9663 6.0716 44 1 8.4218 -1.0611 6.0547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393170570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:45 Heat of formation + Delta-G solvation = -118.522608 kcal Electronic energy + Delta-G solvation = -26851.495377 eV Core-core repulsion = 22894.480275 eV Total energy + Delta-G solvation = -3957.015103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.05504 -37.63850 -36.68503 -36.26715 -35.19526 -34.70412 -34.10480 -33.79851 -30.32125 -29.52808 -28.54326 -27.27717 -25.88181 -23.95711 -22.36764 -21.55057 -21.19409 -20.12549 -18.98628 -17.68123 -17.51916 -17.20979 -16.60233 -16.01234 -15.88889 -15.58005 -15.50497 -14.90773 -14.36844 -14.16994 -14.14158 -13.79695 -13.44311 -13.27475 -13.04964 -12.56490 -12.48231 -12.26482 -12.24193 -12.16922 -12.05154 -11.84218 -11.52640 -11.46409 -11.42480 -11.35601 -11.33976 -11.29970 -11.25754 -10.96239 -10.45293 -9.92053 -9.84448 -9.72707 -9.57091 -9.27506 -9.13298 -8.02722 -7.76786 -7.21208 -4.86426 1.15951 2.18617 2.48877 2.83511 2.85382 2.88232 2.88592 2.95420 3.61503 3.73653 4.17626 4.40444 4.46021 4.59213 4.67382 4.70431 4.99169 5.10163 5.17300 5.31987 5.33529 5.37309 5.46021 5.56216 5.62128 5.68703 5.84096 5.88077 5.96632 5.99751 6.02612 6.06349 6.27478 6.62064 6.64778 6.84467 6.98666 7.18758 7.28225 7.30224 7.36683 7.56690 7.71197 7.90827 8.05350 8.25612 8.45269 8.58673 9.70175 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009083 B = 0.003161 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.930043 B = 8855.671310 C =11381.089231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C -0.146 4.146 4 C 0.517 3.483 5 O -0.542 6.542 6 N -0.727 5.727 7 C 0.113 3.887 8 C 0.111 3.889 9 N -1.124 6.124 10 S 2.696 3.304 11 O -0.983 6.983 12 O -0.983 6.983 13 C -0.788 4.788 14 C -0.018 4.018 15 C -0.182 4.182 16 C 0.139 3.861 17 C -0.434 4.434 18 H 0.088 0.912 19 C 0.073 3.927 20 N -0.766 5.766 21 Si 0.918 3.082 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.239 4.239 26 C 0.003 3.997 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.412 0.588 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 -0.001 -5.850 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 C -0.204 4.204 4 C 0.303 3.697 5 O -0.418 6.418 6 N -0.380 5.380 7 C -0.012 4.012 8 C -0.017 4.017 9 N -0.880 5.880 10 S 2.795 3.205 11 O -0.974 6.974 12 O -0.973 6.973 13 C -0.884 4.884 14 C -0.038 4.038 15 C -0.203 4.203 16 C 0.135 3.865 17 C -0.461 4.461 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.388 5.388 21 Si 0.741 3.259 22 H -0.188 1.188 23 H -0.198 1.198 24 H -0.182 1.182 25 C -0.259 4.259 26 C -0.017 4.017 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.245 0.755 40 H 0.121 0.879 41 H 0.141 0.859 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.360 -1.111 -5.611 12.719 hybrid contribution 0.797 1.531 -0.145 1.732 sum -10.563 0.419 -5.756 12.037 Atomic orbital electron populations 1.21612 0.92500 1.02781 1.02117 1.21321 0.98384 0.97444 0.96507 1.21815 1.01570 0.93976 1.03049 1.20722 0.81876 0.79356 0.87719 1.90697 1.55316 1.48608 1.47202 1.45896 1.07440 1.59045 1.25641 1.21486 0.93221 0.98144 0.88353 1.21270 0.93531 0.98510 0.88371 1.55650 1.30233 1.76337 1.25814 1.01184 0.71939 0.74742 0.72684 1.93501 1.85254 1.76516 1.42107 1.93484 1.83847 1.72775 1.47228 1.29120 1.30958 1.28500 0.99862 1.20255 0.95047 0.94322 0.94192 1.21337 1.04203 0.95960 0.98766 1.17861 0.86733 0.90472 0.91404 1.19971 1.21458 1.04753 0.99910 0.89393 1.26135 0.96053 0.98239 0.94534 1.69807 1.27887 1.32814 1.08288 0.86134 0.80782 0.79038 0.79960 1.18755 1.19840 1.18180 1.21063 1.07177 1.00334 0.97373 1.20171 0.93981 0.93089 0.94479 0.91931 0.92035 0.92009 0.88383 0.91307 0.91957 0.91784 0.76063 0.90746 0.90704 0.90540 0.89899 0.75542 0.87898 0.85945 0.89986 0.88168 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.48 37.16 0.32 -0.76 16 2 C -0.12 -0.92 3.26 -91.76 -0.30 -1.22 16 3 C -0.15 -1.01 9.09 37.16 0.34 -0.67 16 4 C 0.52 5.84 7.15 -10.98 -0.08 5.77 16 5 O -0.54 -8.21 15.98 5.56 0.09 -8.12 16 6 N -0.73 -7.27 5.45 -60.30 -0.33 -7.60 16 7 C 0.11 1.26 5.82 -4.05 -0.02 1.24 16 8 C 0.11 1.36 6.34 -4.05 -0.03 1.34 16 9 N -1.12 -15.63 6.00 -10.61 -0.06 -15.69 16 10 S 2.70 49.28 5.73 -107.50 -0.62 48.66 16 11 O -0.98 -20.09 17.26 -57.17 -0.99 -21.08 16 12 O -0.98 -19.99 16.72 -57.17 -0.96 -20.95 16 13 C -0.79 -16.53 5.97 -39.29 -0.23 -16.76 16 14 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 15 C -0.18 -4.35 8.70 -38.87 -0.34 -4.69 16 16 C 0.14 3.40 5.57 -106.83 -0.60 2.81 16 17 C -0.43 -10.30 9.05 -37.74 -0.34 -10.64 16 18 H 0.09 1.99 7.91 -52.49 -0.41 1.58 16 19 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 20 N -0.77 -17.29 10.95 55.55 0.61 -16.68 16 21 Si 0.92 16.45 29.60 -169.99 -5.03 11.42 16 22 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 23 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 24 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 25 C -0.24 -5.49 9.80 -38.87 -0.38 -5.87 16 26 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 34 H 0.40 3.12 7.89 -40.82 -0.32 2.80 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 39 H 0.41 4.80 8.65 -34.47 -0.30 4.51 16 40 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 41 H 0.12 2.95 6.16 -52.49 -0.32 2.62 16 42 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 43 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 44 H 0.10 2.05 7.60 -52.48 -0.40 1.65 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -31.39 383.01 -10.33 -41.71 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.31 Total: 11.58 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -2.51 Total: -29.03 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.22 Total: -39.98 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -1.85 Total: -50.15 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Atomic # 16 Polarization: 49.28 SS G_CDS: -0.62 Total: 48.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.39 -10.33 -41.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393170570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.808 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds