Wall clock time and date at job start Tue Mar 31 2020 23:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46753 * 2 1 4 4 H 1.09005 * 109.47080 * 54.34764 * 3 2 1 5 5 C 1.50698 * 109.46940 * 174.34219 * 3 2 1 6 6 H 1.08001 * 120.00141 * 114.38963 * 5 3 2 7 7 C 1.37886 * 120.00367 * 294.39392 * 5 3 2 8 8 N 1.31508 * 120.00302 * 153.60039 * 7 5 3 9 9 Si 1.86796 * 119.99489 * 333.59479 * 7 5 3 10 10 H 1.48498 * 109.47197 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47774 * 300.00454 * 9 7 5 12 12 H 1.48506 * 109.47105 * 60.00192 * 9 7 5 13 13 N 1.46492 * 109.47025 * 294.34286 * 3 2 1 14 14 C 1.34773 * 120.00096 * 85.00368 * 13 3 2 15 15 O 1.21589 * 119.99805 * 359.97438 * 14 13 3 16 16 N 1.34782 * 120.00124 * 179.97438 * 14 13 3 17 17 C 1.39945 * 120.00050 * 184.79475 * 16 14 13 18 18 C 1.38894 * 120.06890 * 331.65800 * 17 16 14 19 19 C 1.38092 * 119.92632 * 180.02562 * 18 17 16 20 20 S 1.76205 * 119.96159 * 180.02562 * 19 18 17 21 21 C 1.81393 * 104.44883 * 90.00052 * 20 19 18 22 22 O 1.42103 * 104.27526 * 206.07321 * 20 19 18 23 23 O 1.42105 * 104.27756 * 333.92733 * 20 19 18 24 24 C 1.38304 * 120.07162 * 0.02562 * 19 18 17 25 25 C 1.38260 * 120.13860 * 359.95961 * 24 19 18 26 26 C 1.38132 * 120.07194 * 359.76074 * 25 24 19 27 27 C 1.50700 * 120.03713 * 180.25408 * 26 25 24 28 28 H 1.08998 * 109.47093 * 60.00300 * 1 2 3 29 29 H 1.09008 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47130 * 299.99376 * 1 2 3 31 31 H 1.09000 * 109.47048 * 239.99889 * 2 1 3 32 32 H 1.08998 * 109.47093 * 119.99700 * 2 1 3 33 33 H 0.97004 * 119.99987 * 354.96521 * 8 7 5 34 34 H 0.97004 * 119.99920 * 264.99976 * 13 3 2 35 35 H 0.96995 * 120.00024 * 4.80042 * 16 14 13 36 36 H 1.08001 * 120.03279 * 359.97438 * 18 17 16 37 37 H 1.09001 * 109.47324 * 59.99854 * 21 20 19 38 38 H 1.09000 * 109.47323 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47412 * 299.99830 * 21 20 19 40 40 H 1.07998 * 119.92460 * 179.97438 * 24 19 18 41 41 H 1.08005 * 119.96241 * 180.02562 * 25 24 19 42 42 H 1.08995 * 109.47110 * 270.28278 * 27 26 25 43 43 H 1.09004 * 109.46946 * 30.27907 * 27 26 25 44 44 H 1.09001 * 109.47037 * 150.27741 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5962 1.9848 0.8351 5 6 3.5404 1.4449 0.1401 6 1 4.1578 1.8038 -0.6701 7 6 4.1251 0.9888 1.3026 8 7 5.3457 0.5002 1.2769 9 14 3.1833 1.0652 2.9139 10 1 4.0269 0.5182 4.0068 11 1 2.8347 2.4764 3.2173 12 1 1.9394 0.2620 2.7988 13 7 1.6659 2.0927 -1.2584 14 6 0.4499 2.6591 -1.3888 15 8 -0.3368 2.6300 -0.4622 16 7 0.1060 3.2577 -2.5464 17 6 -1.1156 3.9326 -2.6492 18 6 -2.1960 3.5386 -1.8703 19 6 -3.4003 4.2063 -1.9744 20 16 -4.7713 3.7077 -0.9863 21 6 -4.6170 4.6901 0.5307 22 8 -5.9088 4.1180 -1.7326 23 8 -4.5282 2.3336 -0.7174 24 6 -3.5314 5.2660 -2.8535 25 6 -2.4577 5.6607 -3.6299 26 6 -1.2487 5.0006 -3.5263 27 6 -0.0773 5.4352 -4.3688 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.8075 0.3928 0.4306 34 1 2.2935 2.1155 -1.9977 35 1 0.7052 3.2206 -3.3083 36 1 -2.0946 2.7104 -1.1846 37 1 -4.6586 5.7507 0.2825 38 1 -5.4340 4.4429 1.2085 39 1 -3.6653 4.4669 1.0129 40 1 -4.4744 5.7862 -2.9333 41 1 -2.5631 6.4889 -4.3152 42 1 -0.0891 4.8936 -5.3146 43 1 -0.1462 6.5057 -4.5623 44 1 0.8508 5.2209 -3.8388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547464849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:13 Heat of formation + Delta-G solvation = -97.895392 kcal Electronic energy + Delta-G solvation = -28126.198300 eV Core-core repulsion = 24170.077660 eV Total energy + Delta-G solvation = -3956.120639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90391 -40.04268 -38.12315 -37.34039 -36.97587 -35.88461 -34.52419 -33.78516 -33.11386 -30.67547 -30.32557 -29.01392 -28.07971 -24.75748 -24.06265 -22.94875 -22.33157 -21.46388 -20.32612 -20.13624 -19.17171 -18.71887 -17.44577 -17.20074 -17.10974 -16.89057 -16.33438 -16.16726 -15.87585 -15.59412 -15.22681 -14.84486 -14.72009 -14.49779 -14.37581 -14.07266 -14.05002 -13.97410 -13.63362 -13.48947 -13.25062 -13.14116 -13.07031 -13.03382 -12.64849 -12.55637 -12.49629 -12.32112 -12.14721 -11.78623 -11.75082 -11.55816 -11.45706 -11.23329 -10.92924 -10.40131 -10.02397 -9.93146 -9.09784 -8.81994 -6.40445 -0.84542 -0.17454 0.30445 1.48738 1.49551 1.62987 1.72451 1.92613 2.03873 2.43208 2.51863 2.93008 3.02887 3.17919 3.34105 3.79546 3.84064 4.07786 4.11088 4.15738 4.31475 4.38787 4.40325 4.43760 4.52313 4.64461 4.74754 4.78441 4.87195 4.93373 5.01460 5.09356 5.13311 5.20325 5.23387 5.28366 5.32883 5.41253 5.55438 5.62098 5.66982 5.94776 6.02810 6.10178 6.54884 7.07906 7.27565 7.55139 8.55497 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.003506 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.734813 B = 7984.913659 C = 9247.094256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.274 3.726 4 H 0.025 0.975 5 C -0.626 4.626 6 H 0.044 0.956 7 C 0.010 3.990 8 N -0.914 5.914 9 Si 1.060 2.940 10 H -0.282 1.282 11 H -0.272 1.272 12 H -0.256 1.256 13 N -0.711 5.711 14 C 0.693 3.307 15 O -0.603 6.603 16 N -0.675 5.675 17 C 0.130 3.870 18 C -0.063 4.063 19 C -0.653 4.653 20 S 2.506 3.494 21 C -0.629 4.629 22 O -0.966 6.966 23 O -0.985 6.985 24 C -0.049 4.049 25 C -0.117 4.117 26 C -0.066 4.066 27 C -0.122 4.122 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.262 0.738 34 H 0.401 0.599 35 H 0.420 0.580 36 H 0.142 0.858 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 13.672 -10.211 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.043 0.957 5 C -0.664 4.664 6 H 0.062 0.938 7 C -0.194 4.194 8 N -0.547 5.547 9 Si 0.882 3.118 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.181 1.181 13 N -0.362 5.362 14 C 0.393 3.607 15 O -0.483 6.483 16 N -0.324 5.324 17 C 0.034 3.966 18 C -0.085 4.085 19 C -0.741 4.741 20 S 2.689 3.311 21 C -0.782 4.782 22 O -0.963 6.963 23 O -0.982 6.982 24 C -0.069 4.069 25 C -0.136 4.136 26 C -0.069 4.069 27 C -0.178 4.178 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.236 0.764 35 H 0.258 0.742 36 H 0.160 0.840 37 H 0.179 0.821 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.182 0.818 41 H 0.189 0.811 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.531 12.670 -7.968 23.820 hybrid contribution 1.800 0.350 -2.174 2.844 sum -16.731 13.020 -10.142 23.501 Atomic orbital electron populations 1.21763 0.95733 1.00105 1.01443 1.22151 0.94978 0.98652 1.00957 1.18627 0.93413 0.89039 0.82056 0.95719 1.22110 0.91224 1.48874 1.04152 0.93813 1.26606 0.96635 0.91207 1.04915 1.70965 1.15321 1.38449 1.30001 0.83810 0.75888 0.78373 0.73683 1.20704 1.19782 1.18052 1.45266 1.13841 1.58885 1.18257 1.16175 0.82947 0.78716 0.82836 1.90810 1.51351 1.65272 1.40910 1.42493 1.19997 1.55946 1.13918 1.17690 0.84852 0.94309 0.99765 1.21313 0.90287 0.98570 0.98310 1.30459 1.15760 1.09738 1.18107 1.04753 0.73450 0.75139 0.77711 1.30043 1.13470 1.16609 1.18079 1.93523 1.48356 1.83970 1.70441 1.93552 1.85520 1.32858 1.86277 1.21227 1.00350 0.93078 0.92205 1.21376 0.90960 1.01037 1.00273 1.20313 0.98090 0.91807 0.96709 1.20949 0.93976 1.03928 0.98962 0.93527 0.93049 0.93910 0.92895 0.92960 0.92828 0.76419 0.74166 0.84050 0.82115 0.82694 0.84596 0.81833 0.81128 0.88762 0.88449 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.53 71.98 0.61 -4.79 16 2 C -0.13 -5.63 5.37 30.60 0.16 -5.46 16 3 C 0.27 12.65 1.84 44.25 0.08 12.74 16 4 H 0.03 1.25 6.13 -2.38 -0.01 1.24 16 5 C -0.63 -33.02 8.92 25.60 0.23 -32.80 16 6 H 0.04 2.42 7.96 -2.91 -0.02 2.40 16 7 C 0.01 0.54 5.15 84.66 0.44 0.97 16 8 N -0.91 -53.69 13.70 21.45 0.29 -53.40 16 9 Si 1.06 49.41 26.57 68.60 1.82 51.23 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.26 -11.19 6.36 99.48 0.63 -10.56 16 13 N -0.71 -27.11 5.03 -461.42 -2.32 -29.44 16 14 C 0.69 25.24 7.04 179.05 1.26 26.50 16 15 O -0.60 -25.53 10.51 -4.00 -0.04 -25.57 16 16 N -0.68 -18.54 4.90 -317.17 -1.55 -20.09 16 17 C 0.13 3.52 6.40 38.15 0.24 3.77 16 18 C -0.06 -1.93 8.19 22.39 0.18 -1.75 16 19 C -0.65 -15.76 5.65 22.25 0.13 -15.63 16 20 S 2.51 55.11 5.80 -56.49 -0.33 54.79 16 21 C -0.63 -7.83 10.79 113.37 1.22 -6.60 16 22 O -0.97 -23.96 17.12 -127.65 -2.19 -26.15 16 23 O -0.98 -31.63 17.12 -127.65 -2.19 -33.82 16 24 C -0.05 -0.90 9.47 22.29 0.21 -0.69 16 25 C -0.12 -1.87 9.70 22.25 0.22 -1.65 16 26 C -0.07 -1.27 5.90 -19.74 -0.12 -1.39 16 27 C -0.12 -1.50 9.45 71.24 0.67 -0.83 16 28 H 0.05 1.90 5.63 -2.39 -0.01 1.88 16 29 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.04 1.80 7.88 -2.39 -0.02 1.78 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.05 2.40 5.79 -2.39 -0.01 2.39 16 33 H 0.26 15.37 8.73 -92.71 -0.81 14.56 16 34 H 0.40 13.33 8.54 -92.71 -0.79 12.54 16 35 H 0.42 8.56 7.58 -92.71 -0.70 7.85 16 36 H 0.14 5.24 5.21 -2.91 -0.02 5.22 16 37 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.16 2.12 7.57 -2.91 -0.02 2.09 16 41 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 0.81 8.09 -2.38 -0.02 0.79 16 44 H 0.06 0.90 7.06 -2.39 -0.02 0.89 16 Total: -1.00 -78.88 366.79 -1.51 -80.39 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.56 Total: 29.67 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 5.55 Total: -27.61 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.58 Total: -102.92 kcal Atomic # 8 Polarization: -81.12 SS G_CDS: -4.41 Total: -85.54 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 1.82 Total: 51.23 kcal Atomic # 16 Polarization: 55.11 SS G_CDS: -0.33 Total: 54.79 kcal Total: -78.88 -1.51 -80.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547464849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.508 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds