Wall clock time and date at job start Tue Mar 31 2020 23:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45199 * 109.46998 * 2 1 4 4 C 1.34886 * 116.99928 * 180.02562 * 3 2 1 5 5 O 1.21645 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.46433 * 120.00101 * 179.97438 * 4 3 2 7 7 C 1.44688 * 123.61214 * 0.15699 * 6 4 3 8 8 C 1.32506 * 113.16518 * 180.29058 * 7 6 4 9 9 S 1.75448 * 110.83998 * 359.76104 * 8 7 6 10 10 C 1.37186 * 123.60978 * 179.97438 * 6 4 3 11 11 N 1.38612 * 124.66262 * 359.97438 * 10 6 4 12 12 C 1.34775 * 119.99876 * 179.72138 * 11 10 6 13 13 O 1.21278 * 120.00114 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00062 * 180.02562 * 12 11 10 15 15 N 1.46891 * 109.47532 * 179.97438 * 14 12 11 16 16 C 1.46900 * 111.00352 * 184.03870 * 15 14 12 17 17 H 1.08998 * 109.47053 * 327.04208 * 16 15 14 18 18 C 1.50703 * 109.47313 * 207.03461 * 16 15 14 19 19 H 1.07993 * 119.99903 * 356.65109 * 18 16 15 20 20 C 1.37883 * 119.99767 * 176.64478 * 18 16 15 21 21 N 1.31512 * 119.99940 * 352.47354 * 20 18 16 22 22 Si 1.86793 * 119.99653 * 172.46477 * 20 18 16 23 23 H 1.48504 * 109.47244 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47674 * 300.00506 * 22 20 18 25 25 H 1.48503 * 109.47146 * 60.00635 * 22 20 18 26 26 C 1.53005 * 109.46857 * 87.03473 * 16 15 14 27 27 C 1.53009 * 109.46671 * 65.56668 * 26 16 15 28 28 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47068 * 300.00547 * 1 2 3 30 30 H 1.08999 * 109.46800 * 59.99897 * 1 2 3 31 31 H 1.09000 * 109.47122 * 239.99958 * 2 1 3 32 32 H 1.08999 * 109.46800 * 120.00103 * 2 1 3 33 33 H 1.08003 * 123.41662 * 0.04883 * 7 6 4 34 34 H 1.08002 * 124.57627 * 179.78051 * 8 7 6 35 35 H 0.97000 * 119.99670 * 359.71599 * 11 10 6 36 36 H 1.09007 * 109.47293 * 59.99026 * 14 12 11 37 37 H 1.09003 * 109.46985 * 299.99944 * 14 12 11 38 38 H 1.00900 * 111.00272 * 307.99956 * 15 14 12 39 39 H 0.96995 * 120.00341 * 355.70826 * 21 20 18 40 40 H 1.08997 * 109.47094 * 185.56245 * 26 16 15 41 41 H 1.08996 * 109.47386 * 305.57013 * 26 16 15 42 42 H 1.08999 * 109.47094 * 63.32149 * 27 26 16 43 43 H 1.09000 * 109.46490 * 183.32383 * 27 26 16 44 44 H 1.09003 * 109.46846 * 303.32118 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 -0.0005 5 8 4.0923 0.5810 -0.0005 6 6 3.9110 2.8988 -0.0011 7 6 3.1037 4.0995 0.0021 8 6 3.8237 5.2118 -0.0053 9 16 5.5394 4.8447 -0.0099 10 6 5.2570 3.1639 -0.0012 11 7 6.2507 2.1975 -0.0002 12 6 7.5475 2.5645 -0.0060 13 8 7.8450 3.7402 -0.0126 14 6 8.6280 1.5139 -0.0055 15 7 9.9445 2.1654 -0.0131 16 6 11.0227 1.1724 -0.1095 17 1 10.7241 0.2605 0.4076 18 6 12.2724 1.7244 0.5267 19 1 12.2822 2.7337 0.9108 20 6 13.4033 0.9408 0.6184 21 7 13.3505 -0.3310 0.2880 22 14 15.0101 1.6859 1.2116 23 1 16.0667 0.6424 1.2190 24 1 15.4105 2.7886 0.3011 25 1 14.8309 2.2192 2.5859 26 6 11.2961 0.8576 -1.5816 27 6 11.8476 2.1047 -2.2758 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0237 4.0901 0.0060 34 1 3.4103 6.2096 -0.0079 35 1 6.0128 1.2572 0.0048 36 1 8.5271 0.8886 -0.8926 37 1 8.5332 0.8958 0.8873 38 1 10.0087 2.8424 -0.7586 39 1 12.5034 -0.7329 0.0396 40 1 12.0254 0.0506 -1.6512 41 1 10.3688 0.5523 -2.0662 42 1 12.8046 2.3756 -1.8297 43 1 11.9868 1.8981 -3.3369 44 1 11.1443 2.9286 -2.1552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584299289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:44 Heat of formation + Delta-G solvation = -113.463838 kcal Electronic energy + Delta-G solvation = -26826.742515 eV Core-core repulsion = 22869.946778 eV Total energy + Delta-G solvation = -3956.795738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93748 -41.22899 -38.84221 -38.31127 -37.47138 -35.83224 -34.70895 -32.65114 -32.63150 -30.44060 -28.79412 -27.11219 -25.95097 -25.35977 -23.83724 -22.80107 -22.54981 -21.54177 -21.20459 -19.58058 -19.16658 -18.27790 -18.07984 -17.66731 -17.30424 -16.93825 -16.70395 -15.95475 -15.83132 -15.51730 -15.42542 -15.18831 -15.11527 -14.90523 -14.32384 -14.30127 -13.97437 -13.71786 -13.66647 -13.53933 -13.24003 -13.09537 -12.94578 -12.60895 -12.53925 -12.28594 -12.08962 -12.07147 -11.96374 -11.91311 -11.75037 -11.70259 -11.56297 -11.01039 -10.66613 -10.37417 -9.58417 -9.33126 -9.16372 -8.49937 -6.19044 -0.53549 0.13167 0.82490 0.96795 1.18007 1.56436 1.59040 1.63218 1.72499 1.82605 2.00421 2.60864 3.25414 3.39962 3.48820 3.67865 3.88067 3.99826 4.06385 4.13502 4.15598 4.22488 4.32812 4.34733 4.36599 4.51731 4.68361 4.79182 4.89211 4.90335 4.92129 5.03799 5.07769 5.12688 5.18115 5.26416 5.36935 5.38430 5.53257 5.81101 5.94824 6.19146 6.48674 6.52951 6.60015 6.65903 6.77460 7.54082 8.86479 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002412 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.147241 B =11606.023295 C =12652.755983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.348 6.348 4 C 0.538 3.462 5 O -0.551 6.551 6 C -0.241 4.241 7 C -0.070 4.070 8 C -0.276 4.276 9 S 0.295 5.705 10 C 0.067 3.933 11 N -0.624 5.624 12 C 0.511 3.489 13 O -0.507 6.507 14 C 0.047 3.953 15 N -0.671 5.671 16 C 0.208 3.792 17 H 0.005 0.995 18 C -0.576 4.576 19 H 0.042 0.958 20 C -0.024 4.024 21 N -0.937 5.937 22 Si 1.105 2.895 23 H -0.287 1.287 24 H -0.273 1.273 25 H -0.278 1.278 26 C -0.145 4.145 27 C -0.123 4.123 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.176 0.824 34 H 0.203 0.797 35 H 0.433 0.567 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.341 0.659 39 H 0.259 0.741 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.441 6.375 -2.942 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.264 6.264 4 C 0.385 3.615 5 O -0.445 6.445 6 C -0.260 4.260 7 C -0.097 4.097 8 C -0.411 4.411 9 S 0.556 5.444 10 C -0.153 4.153 11 N -0.273 5.273 12 C 0.299 3.701 13 O -0.382 6.382 14 C -0.085 4.085 15 N -0.304 5.304 16 C 0.100 3.900 17 H 0.023 0.977 18 C -0.615 4.615 19 H 0.061 0.939 20 C -0.222 4.222 21 N -0.575 5.575 22 Si 0.929 3.071 23 H -0.213 1.213 24 H -0.199 1.199 25 H -0.204 1.204 26 C -0.185 4.185 27 C -0.180 4.180 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.193 0.807 34 H 0.220 0.780 35 H 0.277 0.723 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.161 0.839 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -24.092 7.441 -2.003 25.294 hybrid contribution -2.869 -2.039 -1.050 3.673 sum -26.961 5.403 -3.053 27.666 Atomic orbital electron populations 1.21821 0.90100 1.04418 1.03861 1.23336 0.97210 0.78881 1.02606 1.86576 1.22250 1.33745 1.83865 1.20305 0.81102 0.88465 0.71601 1.90704 1.60731 1.43242 1.49826 1.19198 0.90012 0.93037 1.23768 1.21042 1.01467 0.88014 0.99145 1.26248 0.98337 1.04427 1.12062 1.84592 1.02865 0.89311 1.67646 1.22556 0.91100 0.99342 1.02325 1.43351 1.03710 1.11017 1.69239 1.21389 0.83057 0.90952 0.74669 1.90605 1.81114 1.19278 1.47188 1.21824 0.88396 0.94240 1.04041 1.60479 0.99600 1.16984 1.53328 1.19183 0.89356 0.89868 0.91618 0.97692 1.22029 0.97680 1.01009 1.40736 0.93943 1.26874 1.05455 0.94859 0.95052 1.70915 1.28942 1.12527 1.45162 0.83064 0.72417 0.74901 0.76737 1.21275 1.19850 1.20375 1.22099 0.98996 0.98891 0.98526 1.21475 1.01064 0.97046 0.98413 0.88239 0.91108 0.91078 0.91322 0.91377 0.80674 0.78012 0.72289 0.90672 0.87374 0.83865 0.93056 0.93617 0.93818 0.93656 0.92955 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.81 6.20 71.98 0.45 1.26 16 3 O -0.35 -6.98 9.95 -58.00 -0.58 -7.56 16 4 C 0.54 13.25 7.91 69.96 0.55 13.80 16 5 O -0.55 -15.66 14.24 19.36 0.28 -15.38 16 6 C -0.24 -5.68 6.00 -19.74 -0.12 -5.80 16 7 C -0.07 -1.20 10.13 22.78 0.23 -0.97 16 8 C -0.28 -4.34 11.09 66.68 0.74 -3.60 16 9 S 0.29 6.75 19.96 -56.49 -1.13 5.62 16 10 C 0.07 1.77 6.98 83.37 0.58 2.35 16 11 N -0.62 -17.45 5.33 -309.04 -1.65 -19.10 16 12 C 0.51 16.29 7.82 87.66 0.69 16.98 16 13 O -0.51 -18.13 13.53 -3.02 -0.04 -18.17 16 14 C 0.05 1.59 5.95 85.56 0.51 2.10 16 15 N -0.67 -28.20 5.94 -499.46 -2.97 -31.17 16 16 C 0.21 10.04 1.97 44.17 0.09 10.13 16 17 H 0.01 0.27 7.23 -2.39 -0.02 0.25 16 18 C -0.58 -31.56 7.33 25.60 0.19 -31.37 16 19 H 0.04 2.42 7.82 -2.91 -0.02 2.39 16 20 C -0.02 -1.34 5.25 84.66 0.44 -0.89 16 21 N -0.94 -55.11 12.90 21.45 0.28 -54.83 16 22 Si 1.11 50.33 29.91 68.60 2.05 52.38 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.15 -6.41 5.46 30.60 0.17 -6.24 16 27 C -0.12 -4.98 9.39 71.99 0.68 -4.31 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 33 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 35 H 0.43 11.63 6.17 -92.71 -0.57 11.06 16 36 H 0.08 2.28 7.43 -2.38 -0.02 2.26 16 37 H 0.11 3.53 8.13 -2.39 -0.02 3.51 16 38 H 0.34 14.09 6.06 -89.69 -0.54 13.54 16 39 H 0.26 15.22 6.02 -92.71 -0.56 14.66 16 40 H 0.05 2.25 6.26 -2.39 -0.01 2.24 16 41 H 0.04 1.68 7.45 -2.39 -0.02 1.67 16 42 H 0.04 2.06 7.20 -2.39 -0.02 2.04 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.86 6.34 -2.39 -0.02 1.84 16 Total: -1.00 -67.53 375.91 2.32 -65.21 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: 0.14 Total: 30.09 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.93 Total: -7.10 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -4.33 Total: -105.10 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.34 Total: -41.11 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.05 Total: 52.38 kcal Atomic # 16 Polarization: 6.75 SS G_CDS: -1.13 Total: 5.62 kcal Total: -67.53 2.32 -65.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584299289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.255 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds