Wall clock time and date at job start Tue Mar 31 2020 23:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47515 * 119.99927 * 2 1 3 5 5 N 1.46503 * 109.47306 * 179.97438 * 4 2 1 6 6 C 1.34775 * 119.99955 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00307 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00049 * 180.02562 * 6 5 4 9 9 C 1.39238 * 120.00035 * 184.29132 * 8 6 5 10 10 C 1.39481 * 119.83581 * 324.69595 * 9 8 6 11 11 C 1.36370 * 120.17391 * 180.29897 * 10 9 8 12 12 C 1.40876 * 119.82168 * 359.48513 * 11 10 9 13 13 C 1.41157 * 120.15870 * 180.25397 * 12 11 10 14 14 H 1.08003 * 119.99672 * 215.01596 * 13 12 11 15 15 C 1.39893 * 120.00333 * 35.01229 * 13 12 11 16 16 N 1.30880 * 119.99961 * 355.54010 * 15 13 12 17 17 Si 1.86796 * 119.99962 * 175.54530 * 15 13 12 18 18 H 1.48499 * 109.47682 * 90.00092 * 17 15 13 19 19 H 1.48502 * 109.47160 * 209.99900 * 17 15 13 20 20 H 1.48504 * 109.47397 * 329.99679 * 17 15 13 21 21 C 1.40866 * 119.67619 * 0.51708 * 12 11 10 22 22 C 1.36373 * 119.82749 * 359.73527 * 21 12 11 23 23 S 1.81398 * 109.46888 * 240.00273 * 2 1 3 24 24 C 1.81404 * 101.92490 * 59.99726 * 23 2 1 25 25 O 1.42105 * 108.57990 * 174.48733 * 23 2 1 26 26 O 1.42102 * 108.57952 * 305.50746 * 23 2 1 27 27 H 1.09003 * 109.46653 * 299.99804 * 1 2 3 28 28 H 1.08992 * 109.47511 * 59.99723 * 1 2 3 29 29 H 1.09001 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47043 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46959 * 299.99855 * 3 2 1 32 32 H 1.08995 * 109.46978 * 60.00544 * 3 2 1 33 33 H 1.09003 * 109.46727 * 60.00157 * 4 2 1 34 34 H 1.08995 * 109.47501 * 300.00123 * 4 2 1 35 35 H 0.96997 * 119.99728 * 359.97438 * 5 4 2 36 36 H 0.96999 * 119.99950 * 4.28545 * 8 6 5 37 37 H 1.07999 * 119.90996 * 0.02909 * 10 9 8 38 38 H 1.07999 * 120.09068 * 179.70468 * 11 10 9 39 39 H 0.97001 * 119.99957 * 179.97438 * 16 15 13 40 40 H 1.07996 * 120.08734 * 179.71100 * 21 12 11 41 41 H 1.07996 * 119.91780 * 180.02562 * 22 21 12 42 42 H 1.09007 * 109.46579 * 59.99991 * 24 23 2 43 43 H 1.08996 * 109.47351 * 180.02562 * 24 23 2 44 44 H 1.08999 * 109.46749 * 300.00390 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5051 -0.7217 1.2488 6 6 4.1790 -1.3058 2.2593 7 8 3.5712 -1.8319 3.1714 8 7 5.5267 -1.3058 2.2593 9 6 6.2229 -1.9857 3.2551 10 6 5.7148 -2.0254 4.5535 11 6 6.3941 -2.6842 5.5355 12 6 7.6065 -3.3348 5.2334 13 6 8.3127 -4.0233 6.2432 14 1 9.3927 -4.0299 6.2381 15 6 7.6138 -4.6969 7.2505 16 7 6.3087 -4.6167 7.3074 17 14 8.5433 -5.7107 8.5145 18 1 8.8946 -4.8537 9.6752 19 1 7.6892 -6.8365 8.9711 20 1 9.7848 -6.2481 7.9021 21 6 8.1134 -3.2902 3.9198 22 6 7.4254 -2.6231 2.9495 23 16 2.1346 -0.8551 -1.4812 24 6 1.4227 0.1515 -2.8119 25 8 3.5496 -0.7330 -1.5286 26 8 1.5479 -2.1484 -1.5285 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 1.2491 34 1 1.6768 -0.2074 2.1392 35 1 3.9900 -0.3023 0.5209 36 1 6.0117 -0.8323 1.5654 37 1 4.7832 -1.5295 4.7826 38 1 6.0018 -2.7100 6.5414 39 1 5.8240 -5.0841 8.0057 40 1 9.0446 -3.7827 3.6819 41 1 7.8125 -2.5884 1.9419 42 1 1.7893 1.1748 -2.7291 43 1 1.7150 -0.2626 -3.7768 44 1 0.3359 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610506912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:19 Heat of formation + Delta-G solvation = -100.346684 kcal Electronic energy + Delta-G solvation = -27425.472587 eV Core-core repulsion = 23469.245652 eV Total energy + Delta-G solvation = -3956.226935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54074 -39.45832 -38.20274 -38.05096 -37.10114 -36.15614 -34.92277 -34.28382 -31.41686 -30.89205 -30.28283 -28.38435 -27.67285 -26.23970 -23.33882 -22.92707 -22.71998 -21.65921 -19.79764 -19.30235 -19.19013 -18.49546 -17.74635 -17.15426 -17.06366 -16.90217 -16.59921 -16.18568 -15.78143 -15.71462 -15.10154 -14.81969 -14.63439 -14.48338 -14.17800 -13.99162 -13.91171 -13.80704 -13.74382 -13.51616 -13.31625 -13.20209 -13.09704 -12.88924 -12.84221 -12.65322 -12.38504 -12.30669 -12.28339 -11.95534 -11.82002 -11.70168 -11.36208 -11.12599 -10.93394 -10.58007 -10.25960 -9.44117 -8.71635 -8.47805 -6.30905 -1.05036 0.85885 1.14273 1.39263 1.47059 1.54855 1.61252 1.73148 2.12492 2.25238 2.59749 2.83630 2.93467 3.21867 3.33316 3.53567 3.70653 3.82215 4.08585 4.19793 4.34728 4.43946 4.49122 4.54756 4.64682 4.67777 4.74601 4.78083 4.97101 4.98382 5.11216 5.16344 5.21016 5.27718 5.29633 5.34034 5.43084 5.68923 5.77776 6.08371 6.13372 6.16211 6.38050 6.72434 6.97760 7.03635 7.04264 7.56657 8.45497 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.002289 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.458918 B =12232.137698 C =12542.909029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.532 4.532 3 C -0.147 4.147 4 C 0.148 3.852 5 N -0.745 5.745 6 C 0.693 3.307 7 O -0.620 6.620 8 N -0.658 5.658 9 C 0.036 3.964 10 C -0.107 4.107 11 C -0.166 4.166 12 C 0.065 3.935 13 C -0.496 4.496 14 H 0.080 0.920 15 C 0.020 3.980 16 N -0.848 5.848 17 Si 0.992 3.008 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.256 1.256 21 C -0.208 4.208 22 C -0.110 4.110 23 S 2.392 3.608 24 C -0.632 4.632 25 O -0.973 6.973 26 O -0.985 6.985 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.415 0.585 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.282 0.718 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.166 0.834 43 H 0.142 0.858 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.044 16.083 -20.922 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.623 4.623 3 C -0.205 4.205 4 C 0.023 3.977 5 N -0.408 5.408 6 C 0.393 3.607 7 O -0.499 6.499 8 N -0.306 5.306 9 C -0.058 4.058 10 C -0.127 4.127 11 C -0.187 4.187 12 C 0.062 3.938 13 C -0.527 4.527 14 H 0.098 0.902 15 C -0.191 4.191 16 N -0.476 5.476 17 Si 0.813 3.187 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.179 1.179 21 C -0.228 4.228 22 C -0.131 4.131 23 S 2.580 3.420 24 C -0.785 4.785 25 O -0.969 6.969 26 O -0.983 6.983 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.255 0.745 36 H 0.252 0.748 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.184 0.816 43 H 0.160 0.840 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.264 14.763 -20.066 28.223 hybrid contribution 0.197 0.092 0.453 0.503 sum -13.067 14.855 -19.613 27.859 Atomic orbital electron populations 1.21935 0.86238 1.04789 1.07309 1.29894 1.08878 1.09626 1.13917 1.22010 1.02108 0.89205 1.07167 1.21123 0.78148 1.00470 0.98006 1.45345 1.07343 1.62475 1.25611 1.16164 0.82231 0.79482 0.82821 1.90913 1.68577 1.52012 1.38448 1.41894 1.03943 1.54666 1.30116 1.17165 0.95892 1.05179 0.87538 1.20668 0.98789 1.00882 0.92381 1.21173 0.98540 1.00217 0.98734 1.18068 0.92697 0.90071 0.92935 1.19749 0.94810 1.29542 1.08555 0.90160 1.26878 0.95688 0.97197 0.99302 1.69924 1.09116 1.37095 1.31506 0.85049 0.78650 0.77584 0.77400 1.18564 1.19831 1.17921 1.20941 1.02603 1.06450 0.92757 1.20417 0.95176 0.98255 0.99209 1.08599 0.75864 0.77402 0.80155 1.30125 1.15718 1.16659 1.16028 1.93484 1.29510 1.87624 1.86331 1.93549 1.79693 1.38433 1.86580 0.88692 0.86609 0.91253 0.91327 0.86666 0.89087 0.92167 0.88952 0.74458 0.74832 0.88357 0.87607 0.90793 0.86800 0.84931 0.81602 0.83993 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.22 71.98 0.59 -0.30 16 2 C -0.53 -6.27 0.62 -10.79 -0.01 -6.28 16 3 C -0.15 -0.87 8.05 71.98 0.58 -0.29 16 4 C 0.15 3.40 4.56 86.38 0.39 3.80 16 5 N -0.75 -20.95 4.86 -478.55 -2.33 -23.28 16 6 C 0.69 27.27 8.40 179.06 1.50 28.77 16 7 O -0.62 -30.50 13.76 -3.97 -0.05 -30.56 16 8 N -0.66 -25.03 5.31 -316.79 -1.68 -26.71 16 9 C 0.04 1.71 6.31 38.57 0.24 1.95 16 10 C -0.11 -5.80 8.61 22.13 0.19 -5.60 16 11 C -0.17 -9.76 8.61 22.48 0.19 -9.56 16 12 C 0.06 3.71 5.55 -21.27 -0.12 3.59 16 13 C -0.50 -28.03 9.02 23.39 0.21 -27.82 16 14 H 0.08 4.27 7.85 -2.91 -0.02 4.25 16 15 C 0.02 1.10 5.42 85.24 0.46 1.56 16 16 N -0.85 -48.79 10.61 21.82 0.23 -48.55 16 17 Si 0.99 41.00 29.56 68.60 2.03 43.03 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 C -0.21 -10.43 9.74 22.48 0.22 -10.21 16 22 C -0.11 -4.95 9.90 22.14 0.22 -4.73 16 23 S 2.39 36.70 4.28 -56.49 -0.24 36.46 16 24 C -0.63 -1.27 9.72 113.37 1.10 -0.17 16 25 O -0.97 -21.12 15.63 -127.37 -1.99 -23.11 16 26 O -0.99 -25.12 17.91 -127.37 -2.28 -27.40 16 27 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.12 -0.27 6.55 -2.39 -0.02 -0.28 16 29 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 30 H 0.07 0.56 6.78 -2.38 -0.02 0.54 16 31 H 0.11 -0.31 6.56 -2.39 -0.02 -0.33 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.41 9.58 5.16 -92.71 -0.48 9.10 16 36 H 0.41 12.10 8.83 -92.71 -0.82 11.28 16 37 H 0.10 5.45 6.22 -2.91 -0.02 5.43 16 38 H 0.11 6.59 6.15 -2.91 -0.02 6.58 16 39 H 0.28 14.85 8.30 -92.71 -0.77 14.08 16 40 H 0.11 5.22 8.06 -2.91 -0.02 5.19 16 41 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.17 -0.69 6.87 -2.39 -0.02 -0.71 16 43 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.16 -0.55 6.87 -2.39 -0.02 -0.57 16 Total: -1.00 -89.00 366.99 -0.78 -89.79 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.25 Total: 35.65 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 5.78 Total: -25.31 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -3.78 Total: -98.54 kcal Atomic # 8 Polarization: -76.74 SS G_CDS: -4.33 Total: -81.07 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 16 Polarization: 36.70 SS G_CDS: -0.24 Total: 36.46 kcal Total: -89.00 -0.78 -89.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610506912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.561 kcal (2) G-P(sol) polarization free energy of solvation -89.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds