Wall clock time and date at job start Tue Mar 31 2020 23:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46673 * 2 1 4 4 H 1.08994 * 109.46920 * 304.99379 * 3 2 1 5 5 C 1.53000 * 109.47123 * 184.99736 * 3 2 1 6 6 O 1.42906 * 109.47072 * 304.99967 * 5 3 2 7 7 N 1.46898 * 109.47179 * 64.99516 * 3 2 1 8 8 C 1.46904 * 111.00103 * 204.99825 * 7 3 2 9 9 C 1.50699 * 109.47573 * 180.02562 * 8 7 3 10 10 O 1.21292 * 119.99437 * 5.21430 * 9 8 7 11 11 N 1.34774 * 120.00170 * 185.22326 * 9 8 7 12 12 C 1.46496 * 119.99632 * 185.23163 * 11 9 8 13 13 C 1.50705 * 109.47115 * 89.99969 * 12 11 9 14 14 H 1.07997 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99880 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00284 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47051 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47342 * 120.00098 * 17 15 13 20 20 H 1.48509 * 109.47040 * 240.00243 * 17 15 13 21 21 C 1.39921 * 119.99901 * 5.22590 * 11 9 8 22 22 C 1.38894 * 120.06765 * 292.54033 * 21 11 9 23 23 C 1.38102 * 119.95709 * 179.72719 * 22 21 11 24 24 C 1.38280 * 120.07939 * 0.57127 * 23 22 21 25 25 C 1.38381 * 120.13380 * 359.70008 * 24 23 22 26 26 Cl 1.73588 * 119.98269 * 180.02562 * 25 24 23 27 27 C 1.38249 * 120.03692 * 0.02562 * 25 24 23 28 28 H 1.09001 * 109.46967 * 60.00850 * 1 2 3 29 29 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.48015 * 300.00117 * 1 2 3 31 31 H 1.08999 * 109.48015 * 239.99883 * 2 1 3 32 32 H 1.09001 * 109.46967 * 119.99150 * 2 1 3 33 33 H 1.08996 * 109.47100 * 64.99507 * 5 3 2 34 34 H 1.08998 * 109.47389 * 184.99935 * 5 3 2 35 35 H 0.96698 * 113.99884 * 180.02562 * 6 5 3 36 36 H 1.00890 * 111.00362 * 328.95345 * 7 3 2 37 37 H 1.08997 * 109.46991 * 60.00118 * 8 7 3 38 38 H 1.09003 * 109.47271 * 300.00574 * 8 7 3 39 39 H 1.09008 * 109.46825 * 209.99393 * 12 11 9 40 40 H 1.08997 * 109.47429 * 329.99645 * 12 11 9 41 41 H 0.97001 * 120.00184 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.02245 * 359.97438 * 22 21 11 43 43 H 1.07999 * 119.96014 * 180.27549 * 23 22 21 44 44 H 1.08002 * 119.93505 * 179.72513 * 24 23 22 45 45 H 1.08004 * 120.04125 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5647 1.4445 -0.1257 6 8 4.1292 0.6406 0.9123 7 7 1.6511 2.0994 1.2552 8 6 1.5722 3.5563 1.0845 9 6 1.1724 4.1942 2.3900 10 8 1.0649 3.5147 3.3890 11 7 0.9341 5.5194 2.4474 12 6 0.6579 6.1587 3.7363 13 6 1.9519 6.6200 4.3558 14 1 2.8866 6.4532 3.8411 15 6 1.9425 7.2549 5.5796 16 7 0.8042 7.4585 6.2061 17 14 3.5466 7.8260 6.3478 18 1 4.6767 7.4806 5.4486 19 1 3.5043 9.2971 6.5462 20 1 3.7338 7.1549 7.6593 21 6 0.9506 6.2846 1.2761 22 6 2.1412 6.4766 0.5870 23 6 2.1539 7.2275 -0.5719 24 6 0.9849 7.7983 -1.0407 25 6 -0.2023 7.6141 -0.3539 26 17 -1.6676 8.3319 -0.9463 27 6 -0.2220 6.8586 0.8037 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8899 31 1 1.8935 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8498 1.0378 -1.0959 34 1 3.9353 2.4657 -0.0366 35 1 5.0950 0.5966 0.8944 36 1 0.7796 1.7283 1.6026 37 1 0.8304 3.7931 0.3218 38 1 2.5451 3.9393 0.7764 39 1 0.0023 7.0162 3.5834 40 1 0.1719 5.4436 4.3999 41 1 0.7977 7.9049 7.0673 42 1 3.0557 6.0355 0.9551 43 1 3.0788 7.3731 -1.1102 44 1 0.9983 8.3889 -1.9449 45 1 -1.1485 6.7143 1.3395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754247013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:05 Heat of formation + Delta-G solvation = -60.843357 kcal Electronic energy + Delta-G solvation = -27787.220379 eV Core-core repulsion = 23830.662730 eV Total energy + Delta-G solvation = -3956.557649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.12890 -38.62417 -37.85943 -36.45164 -35.51953 -34.80512 -32.83819 -32.36096 -30.73077 -29.60592 -28.89686 -27.54967 -25.62500 -23.49245 -22.97330 -22.51500 -22.15240 -20.30791 -19.22532 -17.46539 -17.32378 -16.65287 -16.35945 -16.05803 -15.60421 -15.39933 -15.11519 -14.76374 -14.43943 -14.26918 -14.11915 -13.67036 -13.64159 -13.31481 -13.14036 -12.95706 -12.78424 -12.44611 -12.27221 -11.91492 -11.79148 -11.46305 -11.40773 -11.34421 -11.25701 -11.02287 -10.96292 -10.85003 -10.68056 -10.66539 -10.21048 -9.93633 -9.78052 -9.37885 -8.81827 -8.64317 -8.47634 -8.25975 -7.79965 -6.09073 -4.13940 1.22091 1.32577 2.14392 3.20998 3.28499 3.36087 3.39387 3.54837 3.70620 4.20116 4.32000 4.42029 4.70733 4.80129 4.90222 4.95527 5.04971 5.10533 5.24231 5.26717 5.28927 5.35127 5.40699 5.46000 5.46456 5.52713 5.62859 5.72883 5.73401 5.82999 5.85569 6.04713 6.22653 6.24293 6.36329 6.52331 6.68437 6.95131 7.08216 7.29659 7.40089 7.45240 7.70508 7.86217 8.13711 8.24405 8.79899 8.93969 9.50996 10.99393 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006685 B = 0.004657 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4187.448258 B = 6011.108885 C = 8743.537705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C 0.088 3.912 4 H 0.054 0.946 5 C 0.088 3.912 6 O -0.553 6.553 7 N -0.657 5.657 8 C 0.040 3.960 9 C 0.514 3.486 10 O -0.506 6.506 11 N -0.565 5.565 12 C 0.247 3.753 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.181 3.819 22 C -0.122 4.122 23 C -0.096 4.096 24 C -0.126 4.126 25 C -0.021 4.021 26 Cl -0.077 7.077 27 C -0.118 4.118 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.371 0.629 36 H 0.351 0.649 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.035 0.965 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 -6.410 -19.943 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.158 4.158 3 C -0.022 4.022 4 H 0.072 0.928 5 C 0.009 3.991 6 O -0.357 6.357 7 N -0.293 5.293 8 C -0.092 4.092 9 C 0.301 3.699 10 O -0.379 6.379 11 N -0.294 5.294 12 C 0.130 3.870 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.088 3.912 22 C -0.142 4.142 23 C -0.115 4.115 24 C -0.145 4.145 25 C -0.048 4.048 26 Cl -0.048 7.048 27 C -0.138 4.138 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.216 0.784 36 H 0.173 0.827 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.062 -6.742 -18.792 19.993 hybrid contribution 0.538 0.954 -0.203 1.114 sum 1.601 -5.788 -18.995 19.922 Atomic orbital electron populations 1.21875 0.96101 1.02019 1.01707 1.21568 0.95274 0.95629 1.03320 1.21649 0.94101 0.95298 0.91193 0.92810 1.22166 0.93545 0.94114 0.89250 1.86612 1.24336 1.71582 1.53177 1.60107 1.39751 1.01758 1.27640 1.21994 1.02050 0.89781 0.95392 1.20265 0.77681 0.81693 0.90256 1.90707 1.49276 1.61226 1.36682 1.46018 1.69483 1.06555 1.07390 1.19473 0.97307 0.93082 0.77171 1.21380 0.93039 1.37896 1.04276 0.92296 1.24907 0.96643 0.95722 0.96632 1.69936 1.25144 1.42393 1.15672 0.86423 0.83400 0.78171 0.79338 1.19752 1.20928 1.20769 1.17557 0.91942 0.94070 0.87629 1.21523 0.97508 0.99401 0.95762 1.20928 0.97653 0.96948 0.95968 1.20957 0.91075 1.01672 1.00755 1.20670 0.87786 0.99830 0.96518 1.98357 1.36028 1.82482 1.87914 1.21196 0.99017 0.98647 0.94987 0.92994 0.92308 0.92404 0.91618 0.89891 0.94044 0.93889 0.78382 0.82745 0.93189 0.88512 0.94709 0.93148 0.92659 0.85138 0.84989 0.85179 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.74 37.16 0.36 -1.14 16 2 C -0.12 -1.23 5.24 -26.73 -0.14 -1.37 16 3 C 0.09 0.99 2.44 -67.71 -0.17 0.82 16 4 H 0.05 0.54 7.80 -51.93 -0.41 0.13 16 5 C 0.09 0.92 6.80 37.16 0.25 1.17 16 6 O -0.55 -6.63 12.83 -35.23 -0.45 -7.08 16 7 N -0.66 -9.74 5.85 -107.99 -0.63 -10.38 16 8 C 0.04 0.61 4.48 -4.97 -0.02 0.59 16 9 C 0.51 10.54 7.60 -10.99 -0.08 10.46 16 10 O -0.51 -12.54 15.83 5.55 0.09 -12.45 16 11 N -0.56 -11.81 2.51 -114.74 -0.29 -12.10 16 12 C 0.25 6.38 5.15 -5.19 -0.03 6.35 16 13 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.18 3.12 4.43 -83.70 -0.37 2.75 16 22 C -0.12 -1.78 8.45 -39.39 -0.33 -2.11 16 23 C -0.10 -1.12 10.04 -39.62 -0.40 -1.51 16 24 C -0.13 -1.47 9.83 -39.51 -0.39 -1.86 16 25 C -0.02 -0.28 6.32 -39.52 -0.25 -0.53 16 26 Cl -0.08 -0.95 28.95 -51.86 -1.50 -2.46 16 27 C -0.12 -1.87 9.44 -39.36 -0.37 -2.24 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.01 7.73 -51.93 -0.40 0.61 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.04 0.46 7.35 -51.93 -0.38 0.07 16 35 H 0.37 2.82 9.12 45.56 0.42 3.23 16 36 H 0.35 5.35 6.25 -39.30 -0.25 5.11 16 37 H 0.05 0.67 7.78 -51.93 -0.40 0.27 16 38 H 0.10 1.37 6.11 -51.93 -0.32 1.05 16 39 H 0.03 0.92 7.84 -51.92 -0.41 0.51 16 40 H 0.05 1.46 7.36 -51.93 -0.38 1.07 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 1.88 7.55 -52.49 -0.40 1.48 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -33.52 389.08 -9.32 -42.85 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.76 Total: 6.59 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.35 Total: -2.02 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.18 Total: -48.12 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.36 Total: -19.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.52 -9.32 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754247013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.998 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds