Wall clock time and date at job start Tue Mar 31 2020 23:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46673 * 2 1 4 4 H 1.08994 * 109.46920 * 304.99379 * 3 2 1 5 5 C 1.53000 * 109.47123 * 184.99736 * 3 2 1 6 6 O 1.42906 * 109.47072 * 304.99967 * 5 3 2 7 7 N 1.46898 * 109.47179 * 64.99516 * 3 2 1 8 8 C 1.46904 * 111.00103 * 204.99825 * 7 3 2 9 9 C 1.50699 * 109.47573 * 180.02562 * 8 7 3 10 10 O 1.21292 * 119.99437 * 5.21430 * 9 8 7 11 11 N 1.34774 * 120.00170 * 185.22326 * 9 8 7 12 12 C 1.46496 * 119.99632 * 185.23163 * 11 9 8 13 13 C 1.50705 * 109.47115 * 89.99969 * 12 11 9 14 14 H 1.07997 * 120.00043 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99880 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00284 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00017 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47051 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47342 * 120.00098 * 17 15 13 20 20 H 1.48509 * 109.47040 * 240.00243 * 17 15 13 21 21 C 1.39921 * 119.99901 * 5.22590 * 11 9 8 22 22 C 1.38894 * 120.06765 * 292.54033 * 21 11 9 23 23 C 1.38102 * 119.95709 * 179.72719 * 22 21 11 24 24 C 1.38280 * 120.07939 * 0.57127 * 23 22 21 25 25 C 1.38381 * 120.13380 * 359.70008 * 24 23 22 26 26 Cl 1.73588 * 119.98269 * 180.02562 * 25 24 23 27 27 C 1.38249 * 120.03692 * 0.02562 * 25 24 23 28 28 H 1.09001 * 109.46967 * 60.00850 * 1 2 3 29 29 H 1.09005 * 109.46953 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.48015 * 300.00117 * 1 2 3 31 31 H 1.08999 * 109.48015 * 239.99883 * 2 1 3 32 32 H 1.09001 * 109.46967 * 119.99150 * 2 1 3 33 33 H 1.08996 * 109.47100 * 64.99507 * 5 3 2 34 34 H 1.08998 * 109.47389 * 184.99935 * 5 3 2 35 35 H 0.96698 * 113.99884 * 180.02562 * 6 5 3 36 36 H 1.00890 * 111.00362 * 328.95345 * 7 3 2 37 37 H 1.08997 * 109.46991 * 60.00118 * 8 7 3 38 38 H 1.09003 * 109.47271 * 300.00574 * 8 7 3 39 39 H 1.09008 * 109.46825 * 209.99393 * 12 11 9 40 40 H 1.08997 * 109.47429 * 329.99645 * 12 11 9 41 41 H 0.97001 * 120.00184 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.02245 * 359.97438 * 22 21 11 43 43 H 1.07999 * 119.96014 * 180.27549 * 23 22 21 44 44 H 1.08002 * 119.93505 * 179.72513 * 24 23 22 45 45 H 1.08004 * 120.04125 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5647 1.4445 -0.1257 6 8 4.1292 0.6406 0.9123 7 7 1.6511 2.0994 1.2552 8 6 1.5722 3.5563 1.0845 9 6 1.1724 4.1942 2.3900 10 8 1.0649 3.5147 3.3890 11 7 0.9341 5.5194 2.4474 12 6 0.6579 6.1587 3.7363 13 6 1.9519 6.6200 4.3558 14 1 2.8866 6.4532 3.8411 15 6 1.9425 7.2549 5.5796 16 7 0.8042 7.4585 6.2061 17 14 3.5466 7.8260 6.3478 18 1 4.6767 7.4806 5.4486 19 1 3.5043 9.2971 6.5462 20 1 3.7338 7.1549 7.6593 21 6 0.9506 6.2846 1.2761 22 6 2.1412 6.4766 0.5870 23 6 2.1539 7.2275 -0.5719 24 6 0.9849 7.7983 -1.0407 25 6 -0.2023 7.6141 -0.3539 26 17 -1.6676 8.3319 -0.9463 27 6 -0.2220 6.8586 0.8037 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8899 31 1 1.8935 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8498 1.0378 -1.0959 34 1 3.9353 2.4657 -0.0366 35 1 5.0950 0.5966 0.8944 36 1 0.7796 1.7283 1.6026 37 1 0.8304 3.7931 0.3218 38 1 2.5451 3.9393 0.7764 39 1 0.0023 7.0162 3.5834 40 1 0.1719 5.4436 4.3999 41 1 0.7977 7.9049 7.0673 42 1 3.0557 6.0355 0.9551 43 1 3.0788 7.3731 -1.1102 44 1 0.9983 8.3889 -1.9449 45 1 -1.1485 6.7143 1.3395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754247013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:03 Heat of formation + Delta-G solvation = -84.765396 kcal Electronic energy + Delta-G solvation = -27788.257716 eV Core-core repulsion = 23830.662730 eV Total energy + Delta-G solvation = -3957.594986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54359 -39.81633 -38.92189 -37.55582 -36.58570 -36.25529 -34.81430 -33.48442 -31.82283 -31.04377 -29.94195 -29.10355 -27.07897 -24.83325 -24.21380 -23.63820 -23.53351 -21.20566 -20.62083 -18.79168 -18.59579 -18.30215 -17.59223 -17.44218 -16.99147 -16.64937 -16.33618 -16.10324 -15.75825 -15.53474 -15.21864 -14.79143 -14.65399 -14.56205 -14.40007 -14.17243 -13.97730 -13.89795 -13.47869 -13.20835 -13.12548 -12.99827 -12.73550 -12.66839 -12.54571 -12.45033 -12.24481 -12.17868 -11.89104 -11.80274 -11.77208 -11.48600 -10.92805 -10.72876 -10.68481 -10.20680 -9.81063 -9.36828 -9.32442 -8.26087 -6.40852 0.10814 0.22218 1.08730 1.34935 1.37515 1.48914 1.65626 2.05843 2.37277 2.59501 3.04380 3.13830 3.52414 3.57338 3.88001 3.91893 4.07295 4.09063 4.15320 4.22012 4.25941 4.34701 4.39070 4.57138 4.60338 4.62696 4.67135 4.74425 4.82736 4.92669 4.94038 5.07702 5.09476 5.19439 5.24858 5.31984 5.32310 5.42679 5.55768 5.67349 5.80648 5.98014 6.01486 6.30949 6.63828 6.68233 7.07816 7.21086 7.34876 8.81894 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006685 B = 0.004657 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4187.448258 B = 6011.108885 C = 8743.537705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C 0.083 3.917 4 H 0.075 0.925 5 C 0.085 3.915 6 O -0.581 6.581 7 N -0.679 5.679 8 C 0.062 3.938 9 C 0.505 3.495 10 O -0.564 6.564 11 N -0.566 5.566 12 C 0.265 3.735 13 C -0.540 4.540 14 H 0.056 0.944 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.968 3.032 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.281 1.281 21 C 0.145 3.855 22 C -0.125 4.125 23 C -0.077 4.077 24 C -0.108 4.108 25 C -0.025 4.025 26 Cl -0.067 7.067 27 C -0.132 4.132 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.387 0.613 36 H 0.343 0.657 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.019 0.981 40 H 0.005 0.995 41 H 0.268 0.732 42 H 0.131 0.869 43 H 0.176 0.824 44 H 0.166 0.834 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -5.439 -23.583 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C -0.026 4.026 4 H 0.093 0.907 5 C 0.006 3.994 6 O -0.388 6.388 7 N -0.314 5.314 8 C -0.070 4.070 9 C 0.295 3.705 10 O -0.442 6.442 11 N -0.294 5.294 12 C 0.145 3.855 13 C -0.579 4.579 14 H 0.075 0.925 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.207 1.207 21 C 0.054 3.946 22 C -0.144 4.144 23 C -0.095 4.095 24 C -0.127 4.127 25 C -0.052 4.052 26 Cl -0.038 7.038 27 C -0.153 4.153 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.235 0.765 36 H 0.164 0.836 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.037 0.963 40 H 0.023 0.977 41 H 0.077 0.923 42 H 0.149 0.851 43 H 0.194 0.806 44 H 0.184 0.816 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.285 -5.755 -22.504 23.459 hybrid contribution -0.213 0.681 0.835 1.098 sum 3.072 -5.075 -21.669 22.466 Atomic orbital electron populations 1.21858 0.95730 1.02537 1.01380 1.21512 0.95562 0.95018 1.03078 1.21862 0.95083 0.95574 0.90092 0.90736 1.22292 0.92677 0.94119 0.90265 1.86572 1.26083 1.71943 1.54192 1.60150 1.39573 1.01504 1.30149 1.21825 1.03115 0.89871 0.92144 1.21313 0.76299 0.81235 0.91686 1.90664 1.51924 1.62439 1.39137 1.45790 1.69219 1.07220 1.07179 1.18846 0.96071 0.91309 0.79268 1.21635 0.93435 1.37966 1.04819 0.92533 1.25852 1.00298 0.95731 0.97105 1.70061 1.27456 1.43098 1.16149 0.85353 0.79053 0.78179 0.78177 1.18754 1.19490 1.20688 1.17765 0.93749 0.95917 0.87196 1.21608 0.96204 0.99962 0.96656 1.21358 0.99291 0.94485 0.94365 1.21416 0.89900 1.00341 1.01025 1.20781 0.89101 0.99443 0.95918 1.98362 1.35777 1.82162 1.87548 1.21095 0.98087 0.99865 0.96252 0.91696 0.91415 0.94276 0.89413 0.92427 0.90894 0.94093 0.76491 0.83618 0.91002 0.86864 0.96320 0.97720 0.92350 0.85094 0.80618 0.81630 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.74 71.98 0.70 -2.15 16 2 C -0.11 -2.19 5.24 30.59 0.16 -2.03 16 3 C 0.08 1.73 2.44 44.92 0.11 1.84 16 4 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 5 C 0.08 1.58 6.80 71.98 0.49 2.07 16 6 O -0.58 -13.32 12.83 -148.98 -1.91 -15.23 16 7 N -0.68 -20.21 5.85 -495.58 -2.90 -23.11 16 8 C 0.06 1.88 4.48 85.56 0.38 2.27 16 9 C 0.50 21.80 7.60 87.66 0.67 22.46 16 10 O -0.56 -30.08 15.83 -3.07 -0.05 -30.13 16 11 N -0.57 -24.92 2.51 -635.32 -1.59 -26.51 16 12 C 0.26 14.68 5.15 85.64 0.44 15.12 16 13 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 14 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 15 C 0.01 0.54 5.46 84.65 0.46 1.00 16 16 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 17 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 18 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 C 0.15 5.03 4.43 38.15 0.17 5.20 16 22 C -0.12 -3.37 8.45 22.39 0.19 -3.18 16 23 C -0.08 -1.43 10.04 22.25 0.22 -1.21 16 24 C -0.11 -2.06 9.83 22.31 0.22 -1.84 16 25 C -0.03 -0.64 6.32 22.31 0.14 -0.50 16 26 Cl -0.07 -1.56 28.95 -2.72 -0.08 -1.64 16 27 C -0.13 -4.24 9.44 22.42 0.21 -4.02 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.04 0.85 6.43 -2.39 -0.02 0.83 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.41 7.73 -2.39 -0.02 1.39 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.04 0.77 7.35 -2.39 -0.02 0.75 16 35 H 0.39 5.42 9.12 -74.06 -0.68 4.75 16 36 H 0.34 10.96 6.25 -89.70 -0.56 10.40 16 37 H 0.07 1.85 7.78 -2.39 -0.02 1.83 16 38 H 0.11 3.03 6.11 -2.39 -0.01 3.02 16 39 H 0.02 1.07 7.84 -2.38 -0.02 1.06 16 40 H 0.00 0.30 7.36 -2.39 -0.02 0.28 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.13 3.51 7.55 -2.91 -0.02 3.49 16 43 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 44 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -78.30 389.08 0.37 -77.93 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.22 Total: 24.17 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.81 Total: 3.80 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -4.21 Total: -106.22 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.96 Total: -45.36 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -78.30 0.37 -77.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754247013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.839 kcal (2) G-P(sol) polarization free energy of solvation -78.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds