Wall clock time and date at job start Tue Mar 31 2020 23:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47573 * 2 1 4 4 H 1.08998 * 109.46754 * 54.99754 * 3 2 1 5 5 C 1.52998 * 109.47085 * 174.99938 * 3 2 1 6 6 O 1.42905 * 109.47210 * 55.00406 * 5 3 2 7 7 N 1.46903 * 109.47139 * 294.99943 * 3 2 1 8 8 C 1.46894 * 110.99802 * 154.99795 * 7 3 2 9 9 C 1.50704 * 109.47193 * 180.02562 * 8 7 3 10 10 O 1.21287 * 119.99493 * 0.02562 * 9 8 7 11 11 N 1.34769 * 120.00127 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00257 * 355.27313 * 11 9 8 13 13 C 1.50696 * 109.47502 * 89.99605 * 12 11 9 14 14 H 1.08001 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00420 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99968 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00324 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47188 * 59.99860 * 17 15 13 19 19 H 1.48500 * 109.47152 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47058 * 299.99889 * 17 15 13 21 21 C 1.39929 * 120.00101 * 175.26306 * 11 9 8 22 22 C 1.38895 * 120.06755 * 291.85848 * 21 11 9 23 23 C 1.38101 * 119.95628 * 179.71804 * 22 21 11 24 24 C 1.38276 * 120.08272 * 0.57738 * 23 22 21 25 25 C 1.38377 * 120.12873 * 359.69795 * 24 23 22 26 26 Cl 1.73599 * 119.97847 * 180.02562 * 25 24 23 27 27 C 1.38253 * 120.04380 * 359.97438 * 25 24 23 28 28 H 1.09001 * 109.47862 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47262 * 299.99970 * 1 2 3 30 30 H 1.09009 * 109.47221 * 59.99618 * 1 2 3 31 31 H 1.09001 * 109.47262 * 240.00030 * 2 1 3 32 32 H 1.08999 * 109.47256 * 120.00406 * 2 1 3 33 33 H 1.09003 * 109.46847 * 174.99979 * 5 3 2 34 34 H 1.08998 * 109.47531 * 294.99811 * 5 3 2 35 35 H 0.96696 * 113.99592 * 180.02562 * 6 5 3 36 36 H 1.00897 * 111.00179 * 278.95539 * 7 3 2 37 37 H 1.09004 * 109.47171 * 299.99931 * 8 7 3 38 38 H 1.08996 * 109.47494 * 59.99757 * 8 7 3 39 39 H 1.09002 * 109.46918 * 209.99703 * 12 11 9 40 40 H 1.09004 * 109.47196 * 329.99173 * 12 11 9 41 41 H 0.96996 * 120.00291 * 179.97438 * 16 15 13 42 42 H 1.08008 * 120.01984 * 359.97438 * 22 21 11 43 43 H 1.08001 * 119.95759 * 180.27011 * 23 22 21 44 44 H 1.08002 * 119.93964 * 179.72135 * 24 23 22 45 45 H 1.08000 * 120.04362 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 8 4.1293 0.6402 -0.9122 7 7 1.6514 2.0993 -1.2553 8 6 1.5727 3.5561 -1.0846 9 6 1.1719 4.1939 -2.3899 10 8 0.9710 3.5027 -3.3660 11 7 1.0355 5.5322 -2.4722 12 6 1.1752 6.3580 -1.2702 13 6 2.6162 6.7678 -1.1069 14 1 3.3543 6.4449 -1.8262 15 6 2.9925 7.5539 -0.0386 16 7 2.0938 7.9467 0.8377 17 14 4.7788 8.0612 0.1643 18 1 5.2102 8.8404 -1.0241 19 1 4.9205 8.8974 1.3833 20 1 5.6260 6.8486 0.2952 21 6 0.7607 6.1329 -3.7057 22 6 1.7195 6.1289 -4.7106 23 6 1.4438 6.7174 -5.9292 24 6 0.2188 7.3210 -6.1460 25 6 -0.7369 7.3321 -5.1453 26 17 -2.2738 8.0905 -5.4219 27 6 -0.4690 6.7386 -3.9257 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8899 33 1 3.9356 2.4653 0.0366 34 1 3.8499 1.0376 1.0960 35 1 5.0950 0.5955 -0.8937 36 1 2.2853 1.8564 -2.0018 37 1 0.8308 3.7931 -0.3219 38 1 2.5456 3.9390 -0.7764 39 1 0.5531 7.2479 -1.3666 40 1 0.8588 5.7863 -0.3977 41 1 2.3586 8.4994 1.5895 42 1 2.6786 5.6622 -4.5406 43 1 2.1877 6.7104 -6.7121 44 1 0.0072 7.7845 -7.0983 45 1 -1.2150 6.7469 -3.1448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754247016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:08 Heat of formation + Delta-G solvation = -68.909610 kcal Electronic energy + Delta-G solvation = -27716.773312 eV Core-core repulsion = 23759.865884 eV Total energy + Delta-G solvation = -3956.907428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02758 -38.54131 -37.77231 -36.27517 -35.26109 -35.00208 -32.78743 -32.36223 -30.51849 -29.93448 -28.41316 -27.20872 -25.61840 -23.29786 -23.23793 -22.25668 -21.99971 -20.42177 -19.00520 -17.43080 -17.10755 -16.80166 -16.26023 -15.88050 -15.43625 -15.20669 -14.99089 -14.80782 -14.52270 -14.20071 -14.09685 -13.75425 -13.47726 -13.15189 -12.91080 -12.70731 -12.41264 -12.25117 -12.06763 -11.88123 -11.66177 -11.60766 -11.34509 -11.24327 -11.08438 -11.00729 -10.90874 -10.76514 -10.75422 -10.61247 -10.32334 -10.00319 -9.97991 -9.26960 -8.77907 -8.67848 -8.49078 -8.09535 -7.80922 -6.30584 -4.38759 1.45816 1.53692 2.29583 3.13791 3.18822 3.20659 3.25446 3.56801 3.93056 4.16322 4.22714 4.63160 4.88156 5.02823 5.07534 5.08645 5.21727 5.33456 5.36547 5.40582 5.48481 5.54628 5.64538 5.70953 5.78186 5.80639 5.86960 5.99369 5.99909 6.12800 6.16351 6.38536 6.42023 6.53355 6.60376 6.61544 6.73131 6.94667 7.03111 7.18469 7.50748 7.56071 7.63835 7.70272 7.89094 8.07396 8.64033 8.85940 9.29028 10.76287 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007801 B = 0.004144 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3588.578108 B = 6754.739272 C = 8984.452075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C 0.091 3.909 4 H 0.089 0.911 5 C 0.040 3.960 6 O -0.567 6.567 7 N -0.665 5.665 8 C 0.046 3.954 9 C 0.524 3.476 10 O -0.543 6.543 11 N -0.565 5.565 12 C 0.239 3.761 13 C -0.541 4.541 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.888 5.888 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.193 3.807 22 C -0.103 4.103 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.024 4.024 26 Cl -0.080 7.080 27 C -0.116 4.116 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.376 0.624 36 H 0.355 0.645 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.267 0.733 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 -7.221 -4.004 8.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.020 4.020 4 H 0.107 0.893 5 C -0.040 4.040 6 O -0.372 6.372 7 N -0.297 5.297 8 C -0.086 4.086 9 C 0.313 3.687 10 O -0.420 6.420 11 N -0.294 5.294 12 C 0.121 3.879 13 C -0.579 4.579 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.202 1.202 21 C 0.101 3.899 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.051 4.051 26 Cl -0.052 7.052 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.223 0.777 36 H 0.176 0.824 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.799 -7.587 -4.364 8.936 hybrid contribution 2.495 1.081 0.666 2.799 sum 0.696 -6.507 -3.697 7.516 Atomic orbital electron populations 1.21687 0.95556 1.00508 1.02544 1.21337 0.96164 0.94851 1.01692 1.21758 0.90382 0.96468 0.93383 0.89265 1.23013 0.96365 0.94302 0.90274 1.86460 1.25138 1.72262 1.53370 1.60245 1.56792 1.06200 1.06512 1.21827 1.02883 0.88170 0.95699 1.20501 0.76462 0.81343 0.90402 1.90653 1.50358 1.62125 1.38845 1.45978 1.68842 1.06416 1.08176 1.19589 0.97812 0.90459 0.80068 1.21362 0.93384 1.32974 1.10207 0.92114 1.24913 0.97867 0.95367 0.95412 1.69902 1.33644 1.35519 1.13508 0.86574 0.84484 0.78755 0.77785 1.19993 1.21010 1.20194 1.17371 0.91535 0.94345 0.86666 1.21357 0.98909 0.98832 0.93133 1.20892 0.96284 0.97781 0.96941 1.20909 0.93245 1.01737 0.98550 1.20606 0.87836 1.00940 0.95723 1.98342 1.29707 1.80688 1.96440 1.21092 0.96801 0.99571 0.96126 0.93799 0.93546 0.91148 0.91220 0.92595 0.93225 0.93442 0.77717 0.82423 0.88195 0.90803 0.94202 0.93861 0.92281 0.85646 0.85189 0.85316 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.80 37.15 0.36 -1.41 16 2 C -0.10 -1.25 5.33 -26.74 -0.14 -1.39 16 3 C 0.09 1.19 2.41 -67.71 -0.16 1.02 16 4 H 0.09 1.14 7.80 -51.93 -0.40 0.74 16 5 C 0.04 0.48 6.72 37.16 0.25 0.73 16 6 O -0.57 -6.67 12.24 -35.23 -0.43 -7.11 16 7 N -0.66 -10.52 5.33 -107.99 -0.58 -11.09 16 8 C 0.05 0.80 4.63 -4.98 -0.02 0.78 16 9 C 0.52 10.57 7.57 -10.99 -0.08 10.48 16 10 O -0.54 -12.01 15.97 5.55 0.09 -11.92 16 11 N -0.57 -11.64 2.50 -114.74 -0.29 -11.93 16 12 C 0.24 5.41 4.88 -5.20 -0.03 5.39 16 13 C -0.54 -13.28 9.16 -34.44 -0.32 -13.60 16 14 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -23.41 13.29 55.43 0.74 -22.68 16 17 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 C 0.19 3.78 4.74 -83.70 -0.40 3.38 16 22 C -0.10 -1.84 9.56 -39.39 -0.38 -2.21 16 23 C -0.10 -1.48 10.04 -39.62 -0.40 -1.88 16 24 C -0.13 -1.81 9.83 -39.52 -0.39 -2.20 16 25 C -0.02 -0.38 6.32 -39.52 -0.25 -0.63 16 26 Cl -0.08 -1.14 28.95 -51.86 -1.50 -2.64 16 27 C -0.12 -2.09 9.47 -39.36 -0.37 -2.46 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.00 7.75 -51.92 -0.40 0.59 16 31 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.64 7.35 -51.93 -0.38 0.26 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.38 2.86 9.12 45.56 0.42 3.27 16 36 H 0.36 6.04 7.64 -39.29 -0.30 5.74 16 37 H 0.10 1.71 7.17 -51.93 -0.37 1.34 16 38 H 0.07 1.34 7.13 -51.93 -0.37 0.97 16 39 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 40 H 0.04 0.99 6.47 -51.93 -0.34 0.65 16 41 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 43 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 44 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -28.36 392.00 -9.39 -37.75 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.89 Total: 11.43 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.42 Total: -2.37 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.13 Total: -45.70 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.34 Total: -19.03 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.36 -9.39 -37.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754247016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.157 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds