Wall clock time and date at job start Tue Mar 31 2020 23:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47409 * 2 1 4 4 H 1.09000 * 109.47273 * 305.51380 * 3 2 1 5 5 C 1.50695 * 109.47480 * 185.51404 * 3 2 1 6 6 H 1.08004 * 120.00295 * 240.00359 * 5 3 2 7 7 C 1.37880 * 120.00195 * 59.99800 * 5 3 2 8 8 N 1.31509 * 119.99629 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00212 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47378 * 59.99616 * 9 7 5 11 11 H 1.48493 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46797 * 299.99977 * 9 7 5 13 13 N 1.46906 * 109.47076 * 65.51013 * 3 2 1 14 14 C 1.46905 * 110.99873 * 200.31169 * 13 3 2 15 15 C 1.50690 * 109.46815 * 185.04258 * 14 13 3 16 16 O 1.21296 * 120.00598 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00174 * 180.02562 * 15 14 13 18 18 C 1.39926 * 120.00748 * 174.91107 * 17 15 14 19 19 C 1.38894 * 120.06586 * 333.05917 * 18 17 15 20 20 C 1.38091 * 119.92786 * 179.72154 * 19 18 17 21 21 C 1.38304 * 120.07162 * 0.57116 * 20 19 18 22 22 C 1.38261 * 120.13856 * 359.67967 * 21 20 19 23 23 S 1.76196 * 119.96445 * 180.02562 * 22 21 20 24 24 C 1.81406 * 104.45241 * 270.02335 * 23 22 21 25 25 O 1.42104 * 104.27761 * 26.09526 * 23 22 21 26 26 O 1.42100 * 104.27694 * 153.95336 * 23 22 21 27 27 C 1.38136 * 120.07097 * 0.04737 * 22 21 20 28 28 H 1.09007 * 109.47245 * 304.91446 * 1 2 3 29 29 H 1.09000 * 109.47059 * 64.91312 * 1 2 3 30 30 H 1.08998 * 109.47355 * 184.91426 * 1 2 3 31 31 H 1.09000 * 109.47031 * 239.99712 * 2 1 3 32 32 H 1.09003 * 109.47327 * 119.99570 * 2 1 3 33 33 H 0.97005 * 120.00087 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99830 * 324.26660 * 13 3 2 35 35 H 1.08999 * 109.47152 * 305.04441 * 14 13 3 36 36 H 1.09003 * 109.46841 * 65.04166 * 14 13 3 37 37 H 0.97007 * 119.99726 * 354.91063 * 17 15 14 38 38 H 1.08001 * 120.03558 * 359.97438 * 19 18 17 39 39 H 1.08004 * 119.96717 * 180.25279 * 20 19 18 40 40 H 1.07995 * 119.93153 * 179.70373 * 21 20 19 41 41 H 1.08995 * 109.46692 * 59.99639 * 24 23 22 42 42 H 1.08992 * 109.47296 * 180.02562 * 24 23 22 43 43 H 1.09007 * 109.46588 * 300.00609 * 24 23 22 44 44 H 1.08003 * 120.03641 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9841 -0.8365 5 6 3.5408 1.4447 -0.1365 6 1 4.1527 1.8869 0.6358 7 6 4.1328 0.8821 -1.2474 8 7 3.3878 0.3431 -2.1875 9 14 5.9932 0.8842 -1.4163 10 1 6.5946 0.1461 -0.2766 11 1 6.3752 0.2236 -2.6901 12 1 6.4886 2.2841 -1.4159 13 7 1.6620 2.0955 1.2604 14 6 1.6898 3.5580 1.1246 15 6 1.4187 4.1921 2.4644 16 8 1.2211 3.4945 3.4368 17 7 1.3947 5.5345 2.5822 18 6 1.0385 6.1238 3.8003 19 6 0.2038 5.4492 4.6820 20 6 -0.1413 6.0311 5.8859 21 6 0.3339 7.2891 6.2089 22 6 1.1608 7.9654 5.3312 23 16 1.7640 9.5676 5.7477 24 6 0.5136 10.7067 5.0922 25 8 1.7588 9.5856 7.1687 26 8 2.9776 9.6858 5.0180 27 6 1.5142 7.3865 4.1278 28 1 -0.3634 0.5882 0.8427 29 1 -0.3633 0.4357 -0.9307 30 1 -0.3634 -1.0239 0.0880 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8043 -0.0531 -2.9689 34 1 0.7569 1.7787 1.5746 35 1 2.6705 3.8710 0.7663 36 1 0.9259 3.8714 0.4130 37 1 1.6243 6.0922 1.8225 38 1 -0.1718 4.4690 4.4280 39 1 -0.7870 5.5054 6.5737 40 1 0.0587 7.7440 7.1490 41 1 -0.4482 10.4993 5.5612 42 1 0.8092 11.7335 5.3071 43 1 0.4286 10.5714 4.0139 44 1 2.1605 7.9151 3.4427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846995184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:39 Heat of formation + Delta-G solvation = -67.834316 kcal Electronic energy + Delta-G solvation = -26675.008836 eV Core-core repulsion = 22720.191742 eV Total energy + Delta-G solvation = -3954.817093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62710 -38.64101 -37.41251 -36.27066 -36.20381 -34.83010 -32.57726 -31.56506 -31.31113 -30.05203 -29.84319 -27.24559 -25.41298 -23.78636 -22.96453 -22.35380 -20.61748 -19.65986 -19.19949 -18.36714 -17.16111 -16.66578 -16.54181 -16.38288 -16.12982 -15.94181 -15.47684 -14.80336 -14.73215 -14.40839 -14.10215 -13.85607 -13.75243 -13.63635 -13.50391 -13.19207 -12.65034 -12.58648 -12.38991 -12.34047 -12.21936 -12.11140 -11.94341 -11.52349 -11.44737 -11.18683 -11.10380 -10.88563 -10.69693 -10.64847 -10.08533 -10.01328 -9.68764 -9.60239 -9.36808 -9.14905 -8.41481 -8.34684 -7.36930 -6.03799 -4.08881 -0.29824 0.61164 0.98680 2.51190 2.65128 2.92894 3.29540 3.30754 3.35420 3.39573 3.65212 3.78227 4.33635 4.39617 4.43134 4.56657 4.76011 4.81259 4.98183 5.16318 5.18428 5.20782 5.29475 5.32937 5.43222 5.71118 5.74496 5.94172 5.99000 6.11530 6.13397 6.15709 6.20103 6.37686 6.72423 6.80395 6.98797 7.07821 7.24978 7.41224 7.71607 7.83123 8.09969 8.20600 8.30713 8.63975 8.98524 9.56751 11.01424 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017157 B = 0.002276 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.547872 B =12298.939737 C =13410.634604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.500 4.500 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.670 5.670 14 C 0.053 3.947 15 C 0.513 3.487 16 O -0.503 6.503 17 N -0.681 5.681 18 C 0.144 3.856 19 C -0.077 4.077 20 C -0.117 4.117 21 C -0.051 4.051 22 C -0.639 4.639 23 S 2.503 3.497 24 C -0.650 4.650 25 O -0.938 6.938 26 O -0.937 6.937 27 C -0.064 4.064 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.043 0.957 33 H 0.261 0.739 34 H 0.326 0.674 35 H 0.111 0.889 36 H 0.051 0.949 37 H 0.414 0.586 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 19.586 11.142 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.539 4.539 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.304 5.304 14 C -0.080 4.080 15 C 0.302 3.698 16 O -0.376 6.376 17 N -0.327 5.327 18 C 0.048 3.952 19 C -0.098 4.098 20 C -0.137 4.137 21 C -0.071 4.071 22 C -0.726 4.726 23 S 2.682 3.318 24 C -0.800 4.800 25 O -0.935 6.935 26 O -0.934 6.934 27 C -0.085 4.085 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.250 0.750 38 H 0.170 0.830 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.748 19.028 12.270 24.651 hybrid contribution -0.362 0.034 -1.550 1.593 sum -10.110 19.062 10.719 24.093 Atomic orbital electron populations 1.21892 0.99569 0.99682 0.99704 1.21727 0.91276 0.99901 1.03276 1.19179 0.95652 0.90347 0.83421 0.98037 1.21149 0.91077 1.37298 1.04360 0.92066 1.24948 0.98234 0.95396 0.95757 1.69855 1.34911 1.39060 1.09590 0.86588 0.85541 0.78218 0.77217 1.20229 1.21406 1.20367 1.60386 1.33983 1.00850 1.35134 1.21713 1.03423 0.92536 0.90323 1.21543 0.75054 0.80597 0.92588 1.90646 1.45930 1.61612 1.39426 1.43799 1.68813 1.08057 1.12011 1.17889 0.95889 0.93241 0.88194 1.21773 0.93752 1.00774 0.93481 1.21222 1.00501 0.95154 0.96797 1.20871 0.93680 0.94879 0.97633 1.30265 1.14673 1.24034 1.03649 1.05091 0.76156 0.75447 0.75070 1.30227 1.19018 1.16634 1.14107 1.93586 1.86667 1.86218 1.27066 1.93599 1.39886 1.85913 1.73979 1.20570 0.97288 0.95355 0.95324 0.94547 0.93874 0.94278 0.88083 0.93802 0.92903 0.85501 0.87150 0.93146 0.75040 0.83046 0.84726 0.84208 0.84958 0.85076 0.84929 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.82 37.15 0.36 -2.48 16 2 C -0.12 -2.84 5.39 -26.73 -0.14 -2.99 16 3 C 0.22 5.26 2.02 -68.86 -0.14 5.12 16 4 H 0.00 0.05 7.93 -51.93 -0.41 -0.36 16 5 C -0.50 -13.32 8.30 -34.44 -0.29 -13.61 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.89 -24.62 11.29 55.43 0.63 -24.00 16 9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.67 -13.92 5.82 -109.22 -0.64 -14.56 16 14 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 15 C 0.51 8.03 7.67 -10.99 -0.08 7.95 16 16 O -0.50 -9.44 13.58 5.54 0.08 -9.37 16 17 N -0.68 -8.11 5.36 -9.87 -0.05 -8.17 16 18 C 0.14 1.75 6.40 -83.69 -0.54 1.21 16 19 C -0.08 -0.96 8.70 -39.39 -0.34 -1.30 16 20 C -0.12 -1.18 10.04 -39.61 -0.40 -1.58 16 21 C -0.05 -0.47 9.47 -39.55 -0.37 -0.84 16 22 C -0.64 -5.93 5.65 -39.61 -0.22 -6.16 16 23 S 2.50 19.07 5.80 -107.50 -0.62 18.44 16 24 C -0.65 -2.00 10.80 101.05 1.09 -0.91 16 25 O -0.94 -10.05 17.12 -57.54 -0.99 -11.03 16 26 O -0.94 -10.46 17.12 -57.54 -0.99 -11.44 16 27 C -0.06 -0.65 9.37 -39.39 -0.37 -1.02 16 28 H 0.04 0.63 6.30 -51.93 -0.33 0.30 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.33 6.42 6.37 -39.29 -0.25 6.16 16 35 H 0.11 1.93 7.72 -51.93 -0.40 1.53 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.41 3.53 8.79 -40.82 -0.36 3.17 16 38 H 0.15 2.08 5.93 -52.49 -0.31 1.77 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 40 H 0.14 0.98 7.56 -52.49 -0.40 0.58 16 41 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.13 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 44 H 0.14 1.20 7.57 -52.48 -0.40 0.81 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -35.95 377.13 -9.57 -45.53 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.09 Total: 7.18 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.57 Total: -14.30 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.06 Total: -46.72 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.89 Total: -31.84 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 19.07 SS G_CDS: -0.62 Total: 18.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.95 -9.57 -45.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846995184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.306 kcal (2) G-P(sol) polarization free energy of solvation -35.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds