Wall clock time and date at job start Tue Mar 31 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00182 * 2 1 4 4 O 1.20826 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00030 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47186 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47523 * 180.02562 * 6 5 3 8 8 C 1.36946 * 120.00025 * 95.59452 * 7 6 5 9 9 H 1.08000 * 120.00558 * 322.80466 * 8 7 6 10 10 C 1.38984 * 119.99991 * 143.07485 * 8 7 6 11 11 N 1.31406 * 119.99688 * 343.94439 * 10 8 7 12 12 Si 1.86802 * 120.00206 * 163.94975 * 10 8 7 13 13 H 1.48496 * 109.47209 * 94.99016 * 12 10 8 14 14 H 1.48494 * 109.46821 * 214.99113 * 12 10 8 15 15 H 1.48505 * 109.46658 * 334.99073 * 12 10 8 16 16 C 1.34772 * 119.99758 * 275.60015 * 7 6 5 17 17 O 1.21670 * 119.99989 * 175.07203 * 16 7 6 18 18 C 1.47179 * 120.00427 * 355.07418 * 16 7 6 19 19 C 1.35296 * 123.15314 * 186.20312 * 18 16 7 20 20 S 1.70937 * 108.81822 * 179.97438 * 19 18 16 21 21 C 1.70763 * 91.13759 * 0.27992 * 20 19 18 22 22 C 1.50699 * 124.71318 * 179.85357 * 21 20 19 23 23 C 1.53004 * 109.47184 * 277.70132 * 22 21 20 24 24 C 1.53002 * 109.47328 * 173.38306 * 23 22 21 25 25 C 1.52995 * 109.47279 * 293.38630 * 23 22 21 26 26 N 1.28654 * 110.57890 * 359.83637 * 21 20 19 27 27 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46606 * 299.99665 * 1 2 3 29 29 H 1.09002 * 109.47230 * 59.99478 * 1 2 3 30 30 H 1.08997 * 109.47166 * 60.00752 * 5 3 2 31 31 H 1.09000 * 109.47495 * 299.99899 * 5 3 2 32 32 H 1.09000 * 109.47263 * 59.99809 * 6 5 3 33 33 H 1.09001 * 109.47181 * 299.99974 * 6 5 3 34 34 H 0.97005 * 120.00072 * 185.02989 * 11 10 8 35 35 H 1.08003 * 125.59027 * 0.02562 * 19 18 16 36 36 H 1.09002 * 109.47355 * 37.70020 * 22 21 20 37 37 H 1.08998 * 109.47170 * 157.70150 * 22 21 20 38 38 H 1.09004 * 109.46972 * 53.38308 * 23 22 21 39 39 H 1.08997 * 109.46858 * 59.99800 * 24 23 22 40 40 H 1.09000 * 109.47527 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.47249 * 300.00294 * 24 23 22 42 42 H 1.09003 * 109.46828 * 304.34475 * 25 23 22 43 43 H 1.09002 * 109.47287 * 64.34229 * 25 23 22 44 44 H 1.09001 * 109.47316 * 184.34885 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8187 -0.0010 8 6 6.1399 2.9709 -1.1818 9 1 5.7897 2.4718 -2.0732 10 6 7.2807 3.7632 -1.2318 11 7 7.5370 4.6081 -0.2585 12 14 8.4496 3.6273 -2.6826 13 1 8.1135 4.6669 -3.6882 14 1 9.8449 3.8243 -2.2142 15 1 8.3194 2.2823 -3.2986 16 6 6.1430 2.7393 1.1600 17 8 7.3594 2.7127 1.1521 18 6 5.4142 2.6848 2.4374 19 6 6.0284 2.7271 3.6422 20 16 4.8417 2.6404 4.8695 21 6 3.5960 2.5445 3.7055 22 6 2.1280 2.4317 4.0268 23 6 1.7819 0.9714 4.3246 24 6 0.3339 0.8793 4.8103 25 6 1.9469 0.1383 3.0520 26 7 4.0847 2.5823 2.5160 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 3.6109 3.2356 0.8906 33 1 3.6101 3.2367 -0.8893 34 1 8.2926 5.2125 -0.3272 35 1 7.0938 2.8039 3.8022 36 1 1.8988 3.0445 4.8986 37 1 1.5421 2.7776 3.1753 38 1 2.4493 0.5901 5.0975 39 1 -0.3334 1.2606 4.0375 40 1 0.0874 -0.1610 5.0230 41 1 0.2163 1.4727 5.7170 42 1 1.3374 0.5663 2.2561 43 1 2.9940 0.1410 2.7492 44 1 1.6267 -0.8857 3.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871341237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:07 Heat of formation + Delta-G solvation = -60.901351 kcal Electronic energy + Delta-G solvation = -29266.446535 eV Core-core repulsion = 25311.930077 eV Total energy + Delta-G solvation = -3954.516457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29277 -39.69719 -37.69344 -36.25626 -36.17951 -34.43772 -32.26982 -30.59470 -30.14058 -27.61097 -27.36369 -27.16077 -25.83718 -23.93227 -23.04135 -20.88322 -20.39256 -19.96384 -19.00907 -18.06996 -17.37042 -16.34336 -16.27299 -15.97591 -15.60153 -15.23268 -14.82517 -14.58498 -14.30174 -13.89307 -13.74870 -13.60537 -13.47274 -13.19861 -12.67651 -12.49847 -12.35929 -12.24776 -12.10831 -12.01680 -11.76053 -11.53513 -11.38747 -11.16834 -10.99960 -10.95519 -10.91089 -10.73091 -10.62159 -10.58637 -10.48926 -10.20097 -10.09781 -9.17334 -8.97593 -8.79844 -8.26227 -8.18674 -7.10262 -6.13009 -3.84394 1.09726 1.71503 2.13269 2.60197 2.84019 3.01259 3.30455 3.38090 3.40608 4.24130 4.33852 4.77645 4.79488 4.86031 4.96344 5.02608 5.14945 5.20903 5.25844 5.35156 5.43586 5.52547 5.54415 5.59544 5.61698 5.72394 5.80019 5.83530 5.85197 5.88082 5.98812 6.04521 6.12646 6.18553 6.26628 6.39407 6.51683 6.63485 6.71641 7.16177 7.54969 8.01693 8.10789 8.20866 8.99507 9.16171 9.60669 10.30051 10.93911 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004987 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.114277 B = 5613.157244 C = 7575.334165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.473 3.527 4 O -0.507 6.507 5 C -0.117 4.117 6 C 0.111 3.889 7 N -0.430 5.430 8 C -0.337 4.337 9 H 0.085 0.915 10 C 0.058 3.942 11 N -0.813 5.813 12 Si 0.918 3.082 13 H -0.282 1.282 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.521 3.479 17 O -0.524 6.524 18 C 0.049 3.951 19 C -0.245 4.245 20 S 0.144 5.856 21 C 0.022 3.978 22 C -0.038 4.038 23 C -0.091 4.091 24 C -0.145 4.145 25 C -0.146 4.146 26 N -0.433 5.433 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.265 0.735 35 H 0.179 0.821 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 -7.884 9.661 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.316 3.684 4 O -0.394 6.394 5 C -0.156 4.156 6 C -0.014 4.014 7 N -0.149 5.149 8 C -0.464 4.464 9 H 0.103 0.897 10 C -0.153 4.153 11 N -0.448 5.448 12 Si 0.745 3.255 13 H -0.208 1.208 14 H -0.209 1.209 15 H -0.195 1.195 16 C 0.307 3.693 17 O -0.401 6.401 18 C -0.084 4.084 19 C -0.386 4.386 20 S 0.399 5.601 21 C -0.257 4.257 22 C -0.079 4.079 23 C -0.111 4.111 24 C -0.202 4.202 25 C -0.203 4.203 26 N -0.149 5.149 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.197 0.803 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.779 -7.508 10.335 18.790 hybrid contribution 0.908 0.194 -1.539 1.797 sum -12.872 -7.315 8.796 17.221 Atomic orbital electron populations 1.23161 0.77554 1.03009 1.02219 1.86572 1.22527 1.34435 1.84594 1.23947 0.92242 0.80856 0.71364 1.90624 1.67216 1.36218 1.45372 1.21871 0.85937 1.02912 1.04856 1.21745 0.83448 0.91934 1.04278 1.43123 1.03061 1.62989 1.05731 1.19205 1.09553 1.29993 0.87657 0.89696 1.25223 0.98495 0.94538 0.97076 1.69898 1.27283 1.16585 1.31010 0.86085 0.80202 0.78473 0.80737 1.20844 1.20886 1.19496 1.16606 0.86389 0.85139 0.81178 1.90637 1.12533 1.51687 1.85215 1.21339 0.87442 1.02771 0.96856 1.26285 1.05793 1.11287 0.95236 1.82391 0.97498 1.67465 1.12719 1.27170 1.01426 1.05311 0.91786 1.20342 0.87229 0.97422 1.02939 1.21142 0.97232 0.94163 0.98514 1.21820 0.95662 1.01744 1.00992 1.21933 1.02525 0.98997 0.96824 1.67429 1.11049 1.14749 1.21716 0.88720 0.92160 0.92259 0.88590 0.88221 0.87277 0.91552 0.92470 0.80332 0.89967 0.88812 0.90994 0.92530 0.92470 0.92617 0.92534 0.92338 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.19 101.05 1.03 1.39 16 2 O -0.36 -5.09 9.59 -39.24 -0.38 -5.47 16 3 C 0.47 7.81 6.34 36.00 0.23 8.04 16 4 O -0.51 -9.31 15.73 -18.75 -0.29 -9.61 16 5 C -0.12 -2.13 5.63 -27.88 -0.16 -2.28 16 6 C 0.11 2.41 4.24 -4.04 -0.02 2.40 16 7 N -0.43 -11.11 2.57 -116.11 -0.30 -11.41 16 8 C -0.34 -9.28 9.30 -14.99 -0.14 -9.42 16 9 H 0.09 2.20 7.88 -52.49 -0.41 1.79 16 10 C 0.06 1.63 4.47 -17.46 -0.08 1.55 16 11 N -0.81 -24.32 11.00 55.50 0.61 -23.71 16 12 Si 0.92 21.76 29.59 -169.99 -5.03 16.73 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.52 13.85 6.77 -12.63 -0.09 13.76 16 17 O -0.52 -15.75 13.96 5.22 0.07 -15.68 16 18 C 0.05 1.07 6.44 -84.53 -0.54 0.53 16 19 C -0.24 -4.63 10.62 29.68 0.32 -4.32 16 20 S 0.14 2.02 22.92 -107.50 -2.46 -0.45 16 21 C 0.02 0.33 5.76 -13.61 -0.08 0.25 16 22 C -0.04 -0.45 5.25 -27.88 -0.15 -0.60 16 23 C -0.09 -0.93 2.89 -90.62 -0.26 -1.19 16 24 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 25 C -0.15 -1.72 8.56 37.16 0.32 -1.40 16 26 N -0.43 -8.09 5.33 -8.51 -0.05 -8.13 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.60 7.53 -51.93 -0.39 0.21 16 29 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 31 H 0.10 1.84 6.41 -51.93 -0.33 1.50 16 32 H 0.11 2.41 5.03 -51.96 -0.26 2.15 16 33 H 0.07 1.47 7.95 -51.93 -0.41 1.06 16 34 H 0.27 7.54 8.32 -40.82 -0.34 7.20 16 35 H 0.18 3.40 8.04 -52.48 -0.42 2.98 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.71 4.58 -51.93 -0.24 0.47 16 43 H 0.06 0.82 6.63 -51.93 -0.34 0.48 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -33.68 371.45 -7.68 -41.36 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.18 Total: 2.88 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 0.73 Total: 7.88 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.27 Total: -43.25 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.60 Total: -30.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.46 Total: -0.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.68 -7.68 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.543 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds