Wall clock time and date at job start Tue Mar 31 2020 22:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00182 * 2 1 4 4 O 1.20826 * 119.99758 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00030 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47186 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47523 * 180.02562 * 6 5 3 8 8 C 1.36946 * 120.00025 * 95.59452 * 7 6 5 9 9 H 1.08000 * 120.00558 * 322.80466 * 8 7 6 10 10 C 1.38984 * 119.99991 * 143.07485 * 8 7 6 11 11 N 1.31406 * 119.99688 * 343.94439 * 10 8 7 12 12 Si 1.86802 * 120.00206 * 163.94975 * 10 8 7 13 13 H 1.48496 * 109.47209 * 94.99016 * 12 10 8 14 14 H 1.48494 * 109.46821 * 214.99113 * 12 10 8 15 15 H 1.48505 * 109.46658 * 334.99073 * 12 10 8 16 16 C 1.34772 * 119.99758 * 275.60015 * 7 6 5 17 17 O 1.21670 * 119.99989 * 175.07203 * 16 7 6 18 18 C 1.47179 * 120.00427 * 355.07418 * 16 7 6 19 19 C 1.35296 * 123.15314 * 186.20312 * 18 16 7 20 20 S 1.70937 * 108.81822 * 179.97438 * 19 18 16 21 21 C 1.70763 * 91.13759 * 0.27992 * 20 19 18 22 22 C 1.50699 * 124.71318 * 179.85357 * 21 20 19 23 23 C 1.53004 * 109.47184 * 277.70132 * 22 21 20 24 24 C 1.53002 * 109.47328 * 173.38306 * 23 22 21 25 25 C 1.52995 * 109.47279 * 293.38630 * 23 22 21 26 26 N 1.28654 * 110.57890 * 359.83637 * 21 20 19 27 27 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46606 * 299.99665 * 1 2 3 29 29 H 1.09002 * 109.47230 * 59.99478 * 1 2 3 30 30 H 1.08997 * 109.47166 * 60.00752 * 5 3 2 31 31 H 1.09000 * 109.47495 * 299.99899 * 5 3 2 32 32 H 1.09000 * 109.47263 * 59.99809 * 6 5 3 33 33 H 1.09001 * 109.47181 * 299.99974 * 6 5 3 34 34 H 0.97005 * 120.00072 * 185.02989 * 11 10 8 35 35 H 1.08003 * 125.59027 * 0.02562 * 19 18 16 36 36 H 1.09002 * 109.47355 * 37.70020 * 22 21 20 37 37 H 1.08998 * 109.47170 * 157.70150 * 22 21 20 38 38 H 1.09004 * 109.46972 * 53.38308 * 23 22 21 39 39 H 1.08997 * 109.46858 * 59.99800 * 24 23 22 40 40 H 1.09000 * 109.47527 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.47249 * 300.00294 * 24 23 22 42 42 H 1.09003 * 109.46828 * 304.34475 * 25 23 22 43 43 H 1.09002 * 109.47287 * 64.34229 * 25 23 22 44 44 H 1.09001 * 109.47316 * 184.34885 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8187 -0.0010 8 6 6.1399 2.9709 -1.1818 9 1 5.7897 2.4718 -2.0732 10 6 7.2807 3.7632 -1.2318 11 7 7.5370 4.6081 -0.2585 12 14 8.4496 3.6273 -2.6826 13 1 8.1135 4.6669 -3.6882 14 1 9.8449 3.8243 -2.2142 15 1 8.3194 2.2823 -3.2986 16 6 6.1430 2.7393 1.1600 17 8 7.3594 2.7127 1.1521 18 6 5.4142 2.6848 2.4374 19 6 6.0284 2.7271 3.6422 20 16 4.8417 2.6404 4.8695 21 6 3.5960 2.5445 3.7055 22 6 2.1280 2.4317 4.0268 23 6 1.7819 0.9714 4.3246 24 6 0.3339 0.8793 4.8103 25 6 1.9469 0.1383 3.0520 26 7 4.0847 2.5823 2.5160 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 3.9557 0.7809 -0.8909 31 1 3.9565 0.7805 0.8891 32 1 3.6109 3.2356 0.8906 33 1 3.6101 3.2367 -0.8893 34 1 8.2926 5.2125 -0.3272 35 1 7.0938 2.8039 3.8022 36 1 1.8988 3.0445 4.8986 37 1 1.5421 2.7776 3.1753 38 1 2.4493 0.5901 5.0975 39 1 -0.3334 1.2606 4.0375 40 1 0.0874 -0.1610 5.0230 41 1 0.2163 1.4727 5.7170 42 1 1.3374 0.5663 2.2561 43 1 2.9940 0.1410 2.7492 44 1 1.6267 -0.8857 3.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871341237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:07 Heat of formation + Delta-G solvation = -81.223290 kcal Electronic energy + Delta-G solvation = -29267.327760 eV Core-core repulsion = 25311.930077 eV Total energy + Delta-G solvation = -3955.397683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69815 -41.12524 -39.41169 -37.54188 -37.17873 -36.34434 -34.24615 -31.94396 -31.78534 -28.77310 -28.47789 -27.97764 -27.63822 -25.57460 -24.61744 -22.27485 -21.63518 -21.09876 -20.68411 -19.63487 -18.77489 -17.79481 -17.64989 -17.48090 -17.05176 -16.70595 -16.24044 -16.10259 -15.80769 -15.31497 -15.12240 -14.97754 -14.68901 -14.42179 -14.14049 -14.06331 -13.77273 -13.37096 -13.28000 -13.26474 -12.98708 -12.86662 -12.78389 -12.71732 -12.61920 -12.60079 -12.19263 -12.03292 -11.95860 -11.76629 -11.68201 -11.55542 -11.46632 -10.97471 -10.50258 -10.31873 -10.18303 -9.62719 -9.15541 -8.23512 -5.99991 -0.29466 0.43150 0.74836 1.26729 1.30341 1.39806 1.46654 1.53838 1.79440 2.32664 2.85683 3.03612 3.26597 3.32258 3.89106 3.94230 4.01605 4.04624 4.13279 4.22689 4.34804 4.38480 4.40325 4.40691 4.53612 4.63893 4.69782 4.74602 4.77989 4.87848 4.89919 4.95671 4.99561 5.06773 5.15719 5.30774 5.38266 5.40341 5.48365 5.50902 5.52056 6.11068 6.64858 6.82745 6.93783 7.15938 7.58496 8.29376 8.84808 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.004987 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.114277 B = 5613.157244 C = 7575.334165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.487 3.513 4 O -0.527 6.527 5 C -0.107 4.107 6 C 0.118 3.882 7 N -0.444 5.444 8 C -0.361 4.361 9 H 0.092 0.908 10 C 0.007 3.993 11 N -0.858 5.858 12 Si 0.984 3.016 13 H -0.266 1.266 14 H -0.292 1.292 15 H -0.260 1.260 16 C 0.514 3.486 17 O -0.574 6.574 18 C 0.018 3.982 19 C -0.266 4.266 20 S 0.265 5.735 21 C 0.017 3.983 22 C -0.039 4.039 23 C -0.086 4.086 24 C -0.140 4.140 25 C -0.145 4.145 26 N -0.453 5.453 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.261 0.739 35 H 0.169 0.831 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.030 0.970 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.618 -9.285 11.618 22.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.330 3.670 4 O -0.417 6.417 5 C -0.145 4.145 6 C -0.006 4.006 7 N -0.163 5.163 8 C -0.488 4.488 9 H 0.110 0.890 10 C -0.200 4.200 11 N -0.493 5.493 12 Si 0.808 3.192 13 H -0.191 1.191 14 H -0.218 1.218 15 H -0.184 1.184 16 C 0.301 3.699 17 O -0.455 6.455 18 C -0.116 4.116 19 C -0.408 4.408 20 S 0.522 5.478 21 C -0.262 4.262 22 C -0.079 4.079 23 C -0.106 4.106 24 C -0.197 4.197 25 C -0.202 4.202 26 N -0.170 5.170 27 H 0.149 0.851 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.187 0.813 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.411 -8.936 12.297 22.369 hybrid contribution 1.540 0.539 -1.944 2.538 sum -14.872 -8.397 10.354 19.972 Atomic orbital electron populations 1.23544 0.74961 1.05530 1.02543 1.86534 1.24895 1.32502 1.83903 1.23335 0.91303 0.81350 0.70970 1.90617 1.67433 1.37084 1.46520 1.21552 0.87869 1.00295 1.04826 1.21698 0.81253 0.94250 1.03438 1.43335 1.04585 1.62945 1.05447 1.19585 1.10343 1.30193 0.88699 0.89023 1.26166 0.99963 0.94025 0.99835 1.70037 1.27890 1.17989 1.33431 0.85075 0.77166 0.79221 0.77724 1.19076 1.21795 1.18385 1.17275 0.86307 0.83465 0.82845 1.90570 1.14720 1.53709 1.86513 1.20757 0.89035 1.06350 0.95477 1.26526 1.07080 1.10205 0.96980 1.81882 0.93251 1.64401 1.08282 1.27863 1.03596 1.03112 0.91616 1.20576 0.84401 0.99262 1.03703 1.21159 0.99160 0.92434 0.97885 1.21781 0.93596 1.02844 1.01468 1.21919 1.00509 1.00306 0.97446 1.67317 1.09424 1.16407 1.23872 0.85103 0.91592 0.92266 0.88537 0.88404 0.87399 0.92974 0.92984 0.81316 0.86795 0.90077 0.90014 0.92820 0.91374 0.91019 0.93545 0.95059 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.19 113.37 1.16 1.65 16 2 O -0.36 -9.59 9.59 -51.36 -0.49 -10.08 16 3 C 0.49 15.95 6.34 71.24 0.45 16.41 16 4 O -0.53 -19.27 15.73 21.97 0.35 -18.93 16 5 C -0.11 -3.99 5.63 29.85 0.17 -3.82 16 6 C 0.12 5.35 4.24 86.38 0.37 5.71 16 7 N -0.44 -24.18 2.57 -639.50 -1.64 -25.83 16 8 C -0.36 -20.79 9.30 84.07 0.78 -20.01 16 9 H 0.09 4.95 7.88 -2.91 -0.02 4.93 16 10 C 0.01 0.39 4.47 84.94 0.38 0.77 16 11 N -0.86 -54.00 11.00 21.67 0.24 -53.77 16 12 Si 0.98 46.29 29.59 68.60 2.03 48.31 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 14 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 16 C 0.51 28.79 6.77 86.59 0.59 29.38 16 17 O -0.57 -36.66 13.96 -4.25 -0.06 -36.72 16 18 C 0.02 0.80 6.44 40.55 0.26 1.06 16 19 C -0.27 -10.13 10.62 67.14 0.71 -9.41 16 20 S 0.26 6.67 22.92 -56.49 -1.29 5.38 16 21 C 0.02 0.47 5.76 88.57 0.51 0.98 16 22 C -0.04 -0.80 5.25 29.85 0.16 -0.64 16 23 C -0.09 -1.47 2.89 -10.79 -0.03 -1.50 16 24 C -0.14 -1.67 9.19 71.98 0.66 -1.01 16 25 C -0.14 -3.10 8.56 71.98 0.62 -2.48 16 26 N -0.45 -17.01 5.33 -180.85 -0.96 -17.98 16 27 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.16 7.53 -2.39 -0.02 1.14 16 29 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.10 3.72 6.41 -2.39 -0.02 3.70 16 32 H 0.11 4.96 5.03 -2.44 -0.01 4.95 16 33 H 0.05 2.44 7.95 -2.39 -0.02 2.42 16 34 H 0.26 15.67 8.32 -92.70 -0.77 14.90 16 35 H 0.17 6.66 8.04 -2.91 -0.02 6.64 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.05 1.08 4.58 -2.39 -0.01 1.07 16 43 H 0.03 0.83 6.63 -2.39 -0.02 0.82 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -78.95 371.45 5.96 -73.00 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 1.02 Total: 19.50 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.78 Total: 17.10 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -2.37 Total: -97.57 kcal Atomic # 8 Polarization: -65.52 SS G_CDS: -0.21 Total: -65.73 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 6.67 SS G_CDS: -1.29 Total: 5.38 kcal Total: -78.95 5.96 -73.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871341237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.226 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds