Wall clock time and date at job start Tue Mar 31 2020 22:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 C 1.47201 * 109.47407 * 120.00240 * 2 1 3 5 5 C 2.64599 * 109.47189 * 120.00135 * 2 1 3 6 6 C 4.07804 * 109.47285 * 120.00176 * 2 1 3 7 7 O 1.21613 * 120.00027 * 323.29180 * 6 5 4 8 8 N 1.34780 * 119.99630 * 143.29151 * 6 5 4 9 9 C 1.46472 * 120.91656 * 7.54704 * 8 6 5 10 10 C 1.52055 * 110.89281 * 127.87522 * 9 8 6 11 11 N 1.44362 * 114.28652 * 29.10022 * 10 9 8 12 12 C 1.36933 * 116.71957 * 157.51548 * 11 10 9 13 13 H 1.08008 * 119.99674 * 203.95960 * 12 11 10 14 14 C 1.38803 * 120.00393 * 23.95270 * 12 11 10 15 15 N 1.31620 * 120.00182 * 19.19891 * 14 12 11 16 16 Si 1.86807 * 120.00098 * 199.19496 * 14 12 11 17 17 H 1.48497 * 109.47250 * 265.02047 * 16 14 12 18 18 H 1.48504 * 109.47029 * 145.01680 * 16 14 12 19 19 H 1.48496 * 109.46991 * 25.01789 * 16 14 12 20 20 C 1.45106 * 126.55296 * 337.22499 * 11 10 9 21 21 H 1.08999 * 109.79928 * 152.74408 * 20 11 10 22 22 C 1.54957 * 109.12308 * 273.14791 * 20 11 10 23 23 S 1.83199 * 102.91247 * 161.07592 * 22 20 11 24 24 O 1.42103 * 109.34683 * 90.60573 * 23 22 20 25 25 O 1.42102 * 109.35158 * 223.78879 * 23 22 20 26 26 C 1.82878 * 97.05172 * 337.19986 * 23 22 20 27 27 C 1.46864 * 120.91441 * 187.57025 * 8 6 5 28 28 H 1.08997 * 110.07410 * 120.48530 * 27 8 6 29 29 H 1.09005 * 109.47135 * 299.99780 * 1 2 3 30 30 H 1.08992 * 109.47572 * 59.99934 * 1 2 3 31 31 H 1.09006 * 109.47405 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47135 * 240.00220 * 2 1 3 33 33 H 1.09005 * 109.46953 * 60.00109 * 3 2 1 34 34 H 1.08999 * 109.47418 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47392 * 300.00006 * 3 2 1 36 36 H 1.08994 * 109.17845 * 248.46161 * 9 8 6 37 37 H 1.09000 * 109.17926 * 7.74662 * 9 8 6 38 38 H 1.09004 * 108.71739 * 267.74655 * 10 9 8 39 39 H 1.08998 * 108.40526 * 150.22586 * 10 9 8 40 40 H 0.97002 * 120.00155 * 179.97438 * 15 14 12 41 41 H 1.09003 * 110.73223 * 279.43384 * 22 20 11 42 42 H 1.09006 * 110.72446 * 42.54244 * 22 20 11 43 43 H 1.08997 * 110.28338 * 117.70838 * 26 23 22 44 44 H 1.08999 * 110.28004 * 239.71219 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3296 7 8 2.1060 -2.2770 4.1896 8 7 4.2070 -2.1649 3.4769 9 6 5.1844 -1.6064 2.5397 10 6 6.2875 -0.8689 3.2822 11 7 6.5556 -1.3784 4.6060 12 6 7.7914 -1.1091 5.1307 13 1 8.2023 -1.7470 5.8994 14 6 8.5161 -0.0166 4.6748 15 7 7.9039 0.9612 4.0411 16 14 10.3603 0.0661 4.9606 17 1 10.6356 0.8463 6.1937 18 1 11.0117 0.7267 3.8010 19 1 10.8995 -1.3089 5.1141 20 6 5.6452 -2.1420 5.4389 21 1 6.2122 -2.7798 6.1170 22 6 4.7611 -1.1643 6.2535 23 16 3.3485 -2.2150 6.7602 24 8 3.6346 -2.8144 8.0165 25 8 2.1369 -1.4956 6.5765 26 6 3.5155 -3.4682 5.4389 27 6 4.7023 -2.9969 4.5812 28 1 5.2400 -3.8595 4.1877 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 5.6210 -2.4150 1.9535 37 1 4.6804 -0.9101 1.8695 38 1 6.0107 0.1822 3.3657 39 1 7.2026 -0.9360 2.6939 40 1 8.4102 1.7249 3.7228 41 1 5.2988 -0.7937 7.1262 42 1 4.4252 -0.3364 5.6290 43 1 3.7261 -4.4467 5.8706 44 1 2.6063 -3.5083 4.8391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108472240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:09 Heat of formation + Delta-G solvation = 22.351483 kcal Electronic energy + Delta-G solvation = -29082.934633 eV Core-core repulsion = 25132.028290 eV Total energy + Delta-G solvation = -3950.906344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.68519 -37.70815 -36.55667 -36.33419 -35.35747 -34.53514 -33.99456 -31.78616 -31.17061 -28.86418 -28.07736 -27.41679 -25.30262 -24.30135 -23.42459 -22.42361 -21.49131 -19.20615 -18.41800 -17.85301 -16.77749 -16.59851 -16.34074 -16.10793 -15.57304 -15.22312 -15.00800 -14.82665 -14.48379 -14.38911 -13.90507 -13.70339 -13.64465 -13.62781 -13.02467 -12.63016 -12.47654 -12.41939 -12.11565 -11.93580 -11.66369 -11.61003 -11.52786 -11.47987 -11.37448 -11.28446 -10.95103 -10.79690 -10.62108 -10.48687 -10.35099 -10.32289 -10.19162 -9.98712 -9.67649 -9.09486 -8.73872 -8.47323 -7.03416 -5.95848 -3.50095 0.69763 1.55403 2.28067 2.98112 3.15349 3.24713 3.33091 3.35080 3.52553 3.91825 4.11636 4.30326 4.63577 4.71021 4.74832 4.86520 4.88115 4.97918 5.08824 5.15994 5.26239 5.27871 5.38378 5.44722 5.51544 5.57339 5.59348 5.63045 5.74297 5.75526 5.82917 5.96380 5.96990 6.01718 6.03299 6.27320 6.53770 6.70518 6.99092 7.25372 7.33973 7.51514 7.61183 8.12740 8.18501 8.97528 9.58973 9.93001 11.01729 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.005201 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.157850 B = 5381.954679 C = 7770.166772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 C -0.148 4.148 4 C -0.080 4.080 5 C -0.211 4.211 6 C 0.628 3.372 7 O -0.506 6.506 8 N -0.586 5.586 9 C 0.090 3.910 10 C 0.163 3.837 11 N -0.566 5.566 12 C -0.278 4.278 13 H 0.075 0.925 14 C 0.011 3.989 15 N -0.897 5.897 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.180 3.820 21 H 0.092 0.908 22 C -0.590 4.590 23 S 2.376 3.624 24 O -0.963 6.963 25 O -0.933 6.933 26 C -0.653 4.653 27 C 0.153 3.847 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.256 0.744 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 -4.003 -9.651 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.007 4.007 3 C -0.205 4.205 4 C -0.083 4.083 5 C -0.213 4.213 6 C 0.419 3.581 7 O -0.388 6.388 8 N -0.316 5.316 9 C -0.033 4.033 10 C 0.038 3.962 11 N -0.287 5.287 12 C -0.408 4.408 13 H 0.093 0.907 14 C -0.189 4.189 15 N -0.540 5.540 16 Si 0.735 3.265 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.068 3.932 21 H 0.110 0.890 22 C -0.725 4.725 23 S 2.561 3.439 24 O -0.960 6.960 25 O -0.930 6.930 26 C -0.781 4.781 27 C 0.048 3.952 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.783 -3.954 -8.568 13.592 hybrid contribution 1.742 0.199 -0.483 1.818 sum -8.041 -3.756 -9.051 12.676 Atomic orbital electron populations 1.21858 0.93025 1.02727 1.02814 1.18487 0.96167 0.95350 0.90746 1.21853 1.02129 0.93664 1.02834 1.22572 0.98033 0.93458 0.94218 1.20570 1.02043 1.02852 0.95877 1.14984 0.81797 0.78416 0.82883 1.90391 1.56897 1.50575 1.40937 1.47606 1.05232 1.49121 1.29630 1.22314 0.90805 0.98197 0.92020 1.20533 0.94411 0.96982 0.84320 1.42828 1.12156 1.61661 1.12020 1.19341 0.91510 1.08045 1.21864 0.90697 1.25036 0.99065 0.94651 1.00105 1.70072 1.34361 1.07666 1.41872 0.86230 0.84894 0.77879 0.77506 1.21267 1.21408 1.20196 1.21083 0.89954 0.91090 0.91107 0.88983 1.31365 1.16482 1.13299 1.11364 1.09300 0.78277 0.79529 0.76825 1.93541 1.86155 1.77242 1.39043 1.93568 1.42429 1.70533 1.86483 1.32258 1.11632 1.15719 1.18502 1.21752 0.92773 0.93609 0.87068 0.87549 0.91830 0.91358 0.92070 0.88207 0.91823 0.91599 0.91288 0.91784 0.89939 0.91778 0.91951 0.93324 0.85047 0.85376 0.85668 0.76784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.15 37.16 0.34 -0.81 16 2 C 0.01 0.09 3.30 -93.41 -0.31 -0.21 16 3 C -0.15 -1.24 9.15 37.16 0.34 -0.90 16 4 C -0.08 -1.04 12.54 -37.12 -0.47 -1.51 16 5 C -0.21 -3.28 11.62 -38.83 -0.45 -3.73 16 6 C 0.63 10.81 7.40 -14.33 -0.11 10.70 16 7 O -0.51 -9.56 10.45 -16.49 -0.17 -9.74 16 8 N -0.59 -9.60 2.79 -168.51 -0.47 -10.07 16 9 C 0.09 1.44 6.39 -4.54 -0.03 1.41 16 10 C 0.16 3.35 4.92 -5.66 -0.03 3.32 16 11 N -0.57 -12.27 2.79 -167.45 -0.47 -12.74 16 12 C -0.28 -6.77 9.30 -15.06 -0.14 -6.91 16 13 H 0.08 1.79 7.73 -52.48 -0.41 1.38 16 14 C 0.01 0.29 4.80 -17.43 -0.08 0.20 16 15 N -0.90 -23.39 10.69 55.49 0.59 -22.80 16 16 Si 0.91 19.99 29.60 -169.99 -5.03 14.96 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 C 0.18 3.33 2.83 -67.40 -0.19 3.14 16 21 H 0.09 1.60 7.80 -51.93 -0.41 1.20 16 22 C -0.59 -11.12 6.77 38.19 0.26 -10.87 16 23 S 2.38 43.17 5.82 -107.50 -0.63 42.55 16 24 O -0.96 -19.36 18.14 -57.71 -1.05 -20.40 16 25 O -0.93 -19.98 16.28 -66.34 -1.08 -21.06 16 26 C -0.65 -9.94 6.08 37.59 0.23 -9.71 16 27 C 0.15 2.42 3.41 -67.06 -0.23 2.19 16 28 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.22 6.42 -51.93 -0.33 0.89 16 38 H 0.06 1.52 6.76 -51.93 -0.35 1.17 16 39 H 0.06 1.37 7.28 -51.93 -0.38 0.99 16 40 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.13 2.44 8.14 -51.93 -0.42 2.02 16 42 H 0.13 2.61 8.14 -51.93 -0.42 2.18 16 43 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.22 3.48 4.20 -58.78 -0.25 3.23 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -32.47 361.78 -10.04 -42.51 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.33 Total: 5.02 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.86 Total: -13.68 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.34 Total: -45.61 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -2.30 Total: -51.20 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Atomic # 16 Polarization: 43.17 SS G_CDS: -0.63 Total: 42.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.47 -10.04 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108472240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.865 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds