Wall clock time and date at job start Tue Mar 31 2020 22:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 C 1.47201 * 109.47407 * 120.00240 * 2 1 3 5 5 C 2.64599 * 109.47189 * 120.00135 * 2 1 3 6 6 C 4.07804 * 109.47285 * 120.00176 * 2 1 3 7 7 O 1.21613 * 120.00027 * 323.29180 * 6 5 4 8 8 N 1.34780 * 119.99630 * 143.29151 * 6 5 4 9 9 C 1.46472 * 120.91656 * 7.54704 * 8 6 5 10 10 C 1.52055 * 110.89281 * 127.87522 * 9 8 6 11 11 N 1.44362 * 114.28652 * 29.10022 * 10 9 8 12 12 C 1.36933 * 116.71957 * 157.51548 * 11 10 9 13 13 H 1.08008 * 119.99674 * 203.95960 * 12 11 10 14 14 C 1.38803 * 120.00393 * 23.95270 * 12 11 10 15 15 N 1.31620 * 120.00182 * 19.19891 * 14 12 11 16 16 Si 1.86807 * 120.00098 * 199.19496 * 14 12 11 17 17 H 1.48497 * 109.47250 * 265.02047 * 16 14 12 18 18 H 1.48504 * 109.47029 * 145.01680 * 16 14 12 19 19 H 1.48496 * 109.46991 * 25.01789 * 16 14 12 20 20 C 1.45106 * 126.55296 * 337.22499 * 11 10 9 21 21 H 1.08999 * 109.79928 * 152.74408 * 20 11 10 22 22 C 1.54957 * 109.12308 * 273.14791 * 20 11 10 23 23 S 1.83199 * 102.91247 * 161.07592 * 22 20 11 24 24 O 1.42103 * 109.34683 * 90.60573 * 23 22 20 25 25 O 1.42102 * 109.35158 * 223.78879 * 23 22 20 26 26 C 1.82878 * 97.05172 * 337.19986 * 23 22 20 27 27 C 1.46864 * 120.91441 * 187.57025 * 8 6 5 28 28 H 1.08997 * 110.07410 * 120.48530 * 27 8 6 29 29 H 1.09005 * 109.47135 * 299.99780 * 1 2 3 30 30 H 1.08992 * 109.47572 * 59.99934 * 1 2 3 31 31 H 1.09006 * 109.47405 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47135 * 240.00220 * 2 1 3 33 33 H 1.09005 * 109.46953 * 60.00109 * 3 2 1 34 34 H 1.08999 * 109.47418 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47392 * 300.00006 * 3 2 1 36 36 H 1.08994 * 109.17845 * 248.46161 * 9 8 6 37 37 H 1.09000 * 109.17926 * 7.74662 * 9 8 6 38 38 H 1.09004 * 108.71739 * 267.74655 * 10 9 8 39 39 H 1.08998 * 108.40526 * 150.22586 * 10 9 8 40 40 H 0.97002 * 120.00155 * 179.97438 * 15 14 12 41 41 H 1.09003 * 110.73223 * 279.43384 * 22 20 11 42 42 H 1.09006 * 110.72446 * 42.54244 * 22 20 11 43 43 H 1.08997 * 110.28338 * 117.70838 * 26 23 22 44 44 H 1.08999 * 110.28004 * 239.71219 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9225 3.3296 7 8 2.1060 -2.2770 4.1896 8 7 4.2070 -2.1649 3.4769 9 6 5.1844 -1.6064 2.5397 10 6 6.2875 -0.8689 3.2822 11 7 6.5556 -1.3784 4.6060 12 6 7.7914 -1.1091 5.1307 13 1 8.2023 -1.7470 5.8994 14 6 8.5161 -0.0166 4.6748 15 7 7.9039 0.9612 4.0411 16 14 10.3603 0.0661 4.9606 17 1 10.6356 0.8463 6.1937 18 1 11.0117 0.7267 3.8010 19 1 10.8995 -1.3089 5.1141 20 6 5.6452 -2.1420 5.4389 21 1 6.2122 -2.7798 6.1170 22 6 4.7611 -1.1643 6.2535 23 16 3.3485 -2.2150 6.7602 24 8 3.6346 -2.8144 8.0165 25 8 2.1369 -1.4956 6.5765 26 6 3.5155 -3.4682 5.4389 27 6 4.7023 -2.9969 4.5812 28 1 5.2400 -3.8595 4.1877 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 5.6210 -2.4150 1.9535 37 1 4.6804 -0.9101 1.8695 38 1 6.0107 0.1822 3.3657 39 1 7.2026 -0.9360 2.6939 40 1 8.4102 1.7249 3.7228 41 1 5.2988 -0.7937 7.1262 42 1 4.4252 -0.3364 5.6290 43 1 3.7261 -4.4467 5.8706 44 1 2.6063 -3.5083 4.8391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108472240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:08 Heat of formation + Delta-G solvation = 0.714286 kcal Electronic energy + Delta-G solvation = -29083.872893 eV Core-core repulsion = 25132.028290 eV Total energy + Delta-G solvation = -3951.844603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02374 -39.19163 -37.91980 -37.36484 -36.94500 -36.08972 -35.37506 -33.03006 -32.75338 -30.25275 -29.67174 -28.04784 -26.76526 -25.77090 -24.74276 -23.83677 -22.55043 -20.62066 -19.92392 -19.37503 -18.23036 -17.99783 -17.67624 -17.47226 -16.88847 -16.70526 -16.47357 -16.03121 -15.81363 -15.66265 -15.36226 -15.25531 -15.11003 -14.45379 -14.36832 -14.19556 -13.83880 -13.32827 -13.20938 -13.13849 -13.09355 -12.97825 -12.85336 -12.80704 -12.64501 -12.44037 -12.37153 -12.31368 -12.25599 -12.15942 -11.90741 -11.64107 -11.33641 -11.27900 -11.15048 -10.61255 -10.35811 -9.85402 -8.83292 -7.82422 -5.40352 -0.77713 0.36990 1.15665 1.47452 1.51885 1.59673 1.71201 1.78974 2.34970 2.48212 2.65964 2.88452 3.19075 3.23837 3.29466 3.56640 3.71163 3.79702 3.97945 4.02627 4.07271 4.14258 4.18577 4.28443 4.43134 4.44778 4.49649 4.60091 4.68775 4.79409 4.84949 4.95232 4.95660 5.02372 5.11332 5.23513 5.34760 5.36341 5.49839 5.68357 5.73081 6.08791 6.20837 6.32914 6.83793 7.13164 7.84222 8.09425 9.11310 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.005201 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.157850 B = 5381.954679 C = 7770.166772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 C -0.147 4.147 4 C -0.044 4.044 5 C -0.270 4.270 6 C 0.627 3.373 7 O -0.530 6.530 8 N -0.587 5.587 9 C 0.102 3.898 10 C 0.174 3.826 11 N -0.576 5.576 12 C -0.282 4.282 13 H 0.079 0.921 14 C -0.036 4.036 15 N -0.925 5.925 16 Si 0.962 3.038 17 H -0.294 1.294 18 H -0.293 1.293 19 H -0.266 1.266 20 C 0.170 3.830 21 H 0.108 0.892 22 C -0.594 4.594 23 S 2.387 3.613 24 O -0.982 6.982 25 O -0.970 6.970 26 C -0.625 4.625 27 C 0.154 3.846 28 H 0.143 0.857 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.024 0.976 39 H 0.043 0.957 40 H 0.250 0.750 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.167 0.833 44 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 -5.860 -11.528 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.012 4.012 3 C -0.204 4.204 4 C -0.046 4.046 5 C -0.273 4.273 6 C 0.419 3.581 7 O -0.414 6.414 8 N -0.316 5.316 9 C -0.021 4.021 10 C 0.048 3.952 11 N -0.296 5.296 12 C -0.412 4.412 13 H 0.097 0.903 14 C -0.233 4.233 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.221 1.221 18 H -0.219 1.219 19 H -0.191 1.191 20 C 0.059 3.941 21 H 0.126 0.874 22 C -0.728 4.728 23 S 2.574 3.426 24 O -0.979 6.979 25 O -0.966 6.966 26 C -0.755 4.755 27 C 0.049 3.951 28 H 0.161 0.839 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.185 0.815 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.152 -5.805 -10.417 15.661 hybrid contribution 1.788 0.799 0.074 1.960 sum -8.364 -5.006 -10.343 14.212 Atomic orbital electron populations 1.21871 0.91860 1.02966 1.03534 1.18882 0.97033 0.95394 0.89870 1.21874 1.01616 0.93381 1.03550 1.23525 0.95749 0.91386 0.93986 1.20555 1.04578 1.05153 0.96972 1.15167 0.81749 0.78029 0.83152 1.90379 1.57431 1.51693 1.41883 1.47629 1.05135 1.49126 1.29737 1.22125 0.89478 0.99063 0.91416 1.20237 0.95024 0.95691 0.84253 1.42971 1.12191 1.61694 1.12767 1.19676 0.92688 1.07566 1.21292 0.90333 1.25672 1.02194 0.94721 1.00749 1.70248 1.35184 1.08139 1.43439 0.85355 0.81132 0.77919 0.76552 1.22127 1.21897 1.19095 1.21378 0.90275 0.91002 0.91494 0.87447 1.31253 1.17538 1.13062 1.10937 1.08802 0.76899 0.79652 0.77218 1.93509 1.86103 1.77292 1.41006 1.93521 1.43771 1.72156 1.87191 1.32034 1.11573 1.15728 1.16210 1.21877 0.92520 0.93956 0.86720 0.83932 0.93256 0.88557 0.92094 0.85222 0.93343 0.92445 0.88402 0.88776 0.88942 0.95823 0.93860 0.94026 0.85669 0.87623 0.81485 0.76693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.15 71.98 0.66 -1.23 16 2 C 0.01 0.09 3.30 -12.60 -0.04 0.05 16 3 C -0.15 -2.18 9.15 71.98 0.66 -1.52 16 4 C -0.04 -1.08 12.54 31.13 0.39 -0.69 16 5 C -0.27 -8.23 11.62 30.02 0.35 -7.88 16 6 C 0.63 21.18 7.40 85.49 0.63 21.81 16 7 O -0.53 -19.80 10.45 16.73 0.17 -19.63 16 8 N -0.59 -18.44 2.79 -805.30 -2.25 -20.69 16 9 C 0.10 3.16 6.39 86.07 0.55 3.71 16 10 C 0.17 7.23 4.92 86.47 0.43 7.66 16 11 N -0.58 -24.95 2.79 -683.69 -1.91 -26.86 16 12 C -0.28 -13.76 9.30 84.03 0.78 -12.98 16 13 H 0.08 3.70 7.73 -2.91 -0.02 3.68 16 14 C -0.04 -1.85 4.80 84.86 0.41 -1.44 16 15 N -0.93 -49.88 10.69 21.65 0.23 -49.65 16 16 Si 0.96 41.51 29.60 68.60 2.03 43.55 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 C 0.17 6.13 2.83 46.08 0.13 6.26 16 21 H 0.11 3.54 7.80 -2.39 -0.02 3.52 16 22 C -0.59 -22.87 6.77 72.65 0.49 -22.38 16 23 S 2.39 86.07 5.82 -56.49 -0.33 85.74 16 24 O -0.98 -38.82 18.14 -127.49 -2.31 -41.14 16 25 O -0.97 -42.26 16.28 -119.24 -1.94 -44.20 16 26 C -0.62 -17.37 6.08 72.26 0.44 -16.93 16 27 C 0.15 4.48 3.41 45.36 0.15 4.64 16 28 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.13 1.31 8.14 -2.38 -0.02 1.30 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.09 2.68 6.42 -2.39 -0.02 2.66 16 38 H 0.02 1.18 6.76 -2.38 -0.02 1.17 16 39 H 0.04 1.94 7.28 -2.39 -0.02 1.92 16 40 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 41 H 0.12 4.85 8.14 -2.39 -0.02 4.83 16 42 H 0.11 4.54 8.14 -2.38 -0.02 4.52 16 43 H 0.17 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.22 6.49 4.20 -110.92 -0.47 6.03 16 Total: -1.00 -72.61 361.78 0.28 -72.33 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.56 Total: 21.48 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 6.03 Total: -20.93 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -3.93 Total: -97.20 kcal Atomic # 8 Polarization: -100.88 SS G_CDS: -4.08 Total: -104.96 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 86.07 SS G_CDS: -0.33 Total: 85.74 kcal Total: -72.61 0.28 -72.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108472240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.040 kcal (2) G-P(sol) polarization free energy of solvation -72.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds