Wall clock time and date at job start Tue Mar 31 2020 23:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 C 1.53005 * 109.47195 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00374 * 275.00250 * 5 4 3 7 7 H 1.08002 * 120.00279 * 146.63325 * 6 5 4 8 8 C 1.38814 * 119.99950 * 326.63807 * 6 5 4 9 9 N 1.31615 * 119.99909 * 335.92067 * 8 6 5 10 10 Si 1.86796 * 119.99956 * 155.92634 * 8 6 5 11 11 H 1.48495 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47201 * 119.99693 * 10 8 6 13 13 H 1.48505 * 109.47223 * 239.99512 * 10 8 6 14 14 S 1.65606 * 119.99595 * 94.99927 * 5 4 3 15 15 O 1.42101 * 106.40428 * 341.70414 * 14 5 4 16 16 O 1.42100 * 106.39893 * 208.78258 * 14 5 4 17 17 C 1.76199 * 107.21598 * 95.24597 * 14 5 4 18 18 C 1.38370 * 119.85291 * 270.25412 * 17 14 5 19 19 C 1.37952 * 120.14179 * 180.25841 * 18 17 14 20 20 C 1.39574 * 119.85755 * 359.48587 * 19 18 17 21 21 C 1.47847 * 120.14845 * 180.28039 * 20 19 18 22 22 O 1.21554 * 119.99943 * 359.97438 * 21 20 19 23 23 N 1.34775 * 120.00280 * 180.02562 * 21 20 19 24 24 C 1.46495 * 119.99969 * 179.97438 * 23 21 20 25 25 C 1.39582 * 119.71025 * 0.25737 * 20 19 18 26 26 C 1.37956 * 119.84847 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.46757 * 299.99897 * 1 2 3 28 28 H 1.09006 * 109.47567 * 59.99332 * 1 2 3 29 29 H 1.09000 * 109.47638 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46878 * 240.00821 * 2 1 3 31 31 H 1.08997 * 109.47482 * 120.00485 * 2 1 3 32 32 H 1.09000 * 109.46948 * 60.00864 * 3 2 1 33 33 H 1.08999 * 109.47570 * 300.00083 * 3 2 1 34 34 H 1.09001 * 109.46871 * 59.99987 * 4 3 2 35 35 H 1.08997 * 109.47292 * 300.00415 * 4 3 2 36 36 H 0.96997 * 120.00118 * 179.97438 * 9 8 6 37 37 H 1.07994 * 119.92580 * 0.02562 * 18 17 14 38 38 H 1.08001 * 120.06878 * 179.76908 * 19 18 17 39 39 H 0.97002 * 119.99805 * 359.97438 * 23 21 20 40 40 H 1.08995 * 109.46991 * 60.00372 * 24 23 21 41 41 H 1.09002 * 109.46863 * 180.02562 * 24 23 21 42 42 H 1.08998 * 109.47017 * 299.99588 * 24 23 21 43 43 H 1.07998 * 120.07588 * 180.02562 * 25 20 19 44 44 H 1.08005 * 119.92420 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.1887 3.5034 -1.1828 7 1 4.0147 4.5688 -1.2150 8 6 4.5442 2.8230 -2.3394 9 7 5.2016 1.6856 -2.2580 10 14 4.0899 3.5217 -4.0111 11 1 3.3584 4.8013 -3.8306 12 1 5.3253 3.7642 -4.7986 13 1 3.2245 2.5548 -4.7332 14 16 4.4528 3.5630 1.4271 15 8 3.8263 2.8089 2.4557 16 8 4.2276 4.9528 1.2351 17 6 6.1892 3.3670 1.6537 18 6 6.6756 2.2584 2.3237 19 6 8.0336 2.1016 2.5091 20 6 8.9181 3.0589 2.0098 21 6 10.3751 2.8942 2.1995 22 8 10.8050 1.9237 2.7917 23 7 11.2265 3.8207 1.7166 24 6 12.6701 3.6577 1.9051 25 6 8.4212 4.1723 1.3303 26 6 7.0606 4.3194 1.1559 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.9329 0.9288 -0.8909 35 1 3.9337 0.9285 0.8890 36 1 5.4497 1.2100 -3.0661 37 1 5.9904 1.5161 2.7055 38 1 8.4117 1.2377 3.0355 39 1 10.8834 4.5954 1.2443 40 1 12.9956 2.7302 1.4341 41 1 13.1931 4.4993 1.4507 42 1 12.8957 3.6229 2.9709 43 1 9.1003 4.9164 0.9411 44 1 6.6747 5.1806 0.6306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191605138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:56 Heat of formation + Delta-G solvation = -110.546485 kcal Electronic energy + Delta-G solvation = -27931.110079 eV Core-core repulsion = 23974.440847 eV Total energy + Delta-G solvation = -3956.669232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.28792 -39.30563 -38.22562 -37.73341 -36.34081 -35.85323 -35.38401 -33.35579 -32.57545 -32.05816 -29.71638 -28.00512 -26.57662 -24.83829 -23.91250 -23.62960 -21.85041 -21.75853 -20.32171 -19.60082 -19.03291 -18.31512 -17.88746 -17.33416 -16.68257 -16.38096 -16.31953 -16.05672 -16.02839 -15.57833 -15.26389 -15.06042 -14.77985 -14.51035 -14.25454 -13.98710 -13.94317 -13.77452 -13.57722 -13.20961 -13.14467 -13.12658 -13.02010 -12.68431 -12.63041 -12.56360 -12.24010 -12.08918 -11.91087 -11.81562 -11.72502 -11.57276 -11.30703 -11.21383 -11.00648 -10.49241 -10.14569 -10.08864 -9.68712 -8.41997 -6.02907 -0.59816 -0.01360 0.27828 1.50521 1.54970 1.57494 1.69224 2.07483 2.28075 2.55501 2.74108 2.89877 3.24460 3.57671 3.58853 3.83979 3.92389 4.17628 4.21041 4.26239 4.37885 4.41681 4.46393 4.51183 4.58516 4.58660 4.88548 4.89287 4.90180 4.93038 5.00852 5.01421 5.07089 5.11073 5.21924 5.25606 5.27215 5.29756 5.44612 5.45983 5.63591 5.76029 5.78766 6.35039 6.40482 6.79636 7.01453 7.28634 8.52053 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.003797 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.196896 B = 7372.728009 C = 8306.578423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.125 4.125 4 C 0.120 3.880 5 N -0.802 5.802 6 C -0.257 4.257 7 H 0.105 0.895 8 C 0.013 3.987 9 N -0.835 5.835 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.273 1.273 13 H -0.269 1.269 14 S 2.518 3.482 15 O -1.023 7.023 16 O -1.010 7.010 17 C -0.643 4.643 18 C -0.054 4.054 19 C -0.092 4.092 20 C -0.116 4.116 21 C 0.559 3.441 22 O -0.573 6.573 23 N -0.715 5.715 24 C 0.083 3.917 25 C -0.096 4.096 26 C -0.048 4.048 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.284 0.716 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.418 0.582 40 H 0.053 0.947 41 H 0.118 0.882 42 H 0.056 0.944 43 H 0.172 0.828 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 1.654 -1.207 6.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.165 4.165 4 C -0.007 4.007 5 N -0.624 5.624 6 C -0.407 4.407 7 H 0.122 0.878 8 C -0.200 4.200 9 N -0.472 5.472 10 Si 0.803 3.197 11 H -0.183 1.183 12 H -0.198 1.198 13 H -0.194 1.194 14 S 2.623 3.377 15 O -1.013 7.013 16 O -1.001 7.001 17 C -0.724 4.724 18 C -0.073 4.073 19 C -0.112 4.112 20 C -0.120 4.120 21 C 0.346 3.654 22 O -0.454 6.454 23 N -0.367 5.367 24 C -0.060 4.060 25 C -0.114 4.114 26 C -0.067 4.067 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.256 0.744 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.074 0.926 43 H 0.189 0.811 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.330 1.291 0.037 6.460 hybrid contribution 0.504 0.243 -0.650 0.857 sum 6.834 1.534 -0.613 7.031 Atomic orbital electron populations 1.21738 0.94589 1.02236 1.01788 1.21433 0.96850 0.95218 1.02085 1.21919 0.95500 0.97893 1.01211 1.21533 0.93619 0.82265 1.03237 1.53933 1.65269 1.23467 1.19720 1.20063 1.41000 0.95778 0.83875 0.87760 1.26476 0.93419 0.96533 1.03597 1.70036 1.29476 1.15779 1.31922 0.85048 0.78689 0.79332 0.76649 1.18270 1.19790 1.19377 1.11834 0.75405 0.74536 0.75935 1.93288 1.76090 1.71832 1.60071 1.93294 1.85692 1.34515 1.86558 1.32346 1.31324 1.02110 1.06582 1.20896 0.95909 0.95685 0.94854 1.21425 0.92521 0.98896 0.98318 1.20198 0.93078 0.97157 1.01528 1.18304 0.86195 0.82599 0.78289 1.90733 1.79305 1.31881 1.43507 1.45676 1.08013 1.25366 1.57659 1.21791 0.78175 1.03800 1.02263 1.21681 0.95626 0.97006 0.97132 1.21029 0.93486 0.97223 0.94947 0.93071 0.92580 0.91230 0.91602 0.92040 0.93864 0.91888 0.88121 0.92987 0.90597 0.84740 0.84086 0.74433 0.92803 0.86387 0.92570 0.81087 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.57 5.93 30.59 0.18 -3.39 16 3 C -0.13 -4.78 5.51 30.60 0.17 -4.61 16 4 C 0.12 5.15 4.97 86.38 0.43 5.58 16 5 N -0.80 -37.44 2.85 -343.45 -0.98 -38.41 16 6 C -0.26 -12.05 9.17 84.03 0.77 -11.28 16 7 H 0.10 4.95 7.45 -2.91 -0.02 4.93 16 8 C 0.01 0.56 4.97 84.86 0.42 0.99 16 9 N -0.83 -37.82 11.29 21.65 0.24 -37.58 16 10 Si 0.98 34.65 29.62 68.60 2.03 36.69 16 11 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 12 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 13 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 14 S 2.52 119.78 5.61 -56.49 -0.32 119.46 16 15 O -1.02 -51.40 16.07 -128.00 -2.06 -53.46 16 16 O -1.01 -51.88 16.26 -128.00 -2.08 -53.96 16 17 C -0.64 -27.47 5.98 22.33 0.13 -27.33 16 18 C -0.05 -2.18 9.50 22.23 0.21 -1.97 16 19 C -0.09 -3.34 9.60 22.52 0.22 -3.13 16 20 C -0.12 -3.79 5.87 -20.09 -0.12 -3.91 16 21 C 0.56 16.74 7.77 86.79 0.67 17.41 16 22 O -0.57 -21.02 16.35 -3.88 -0.06 -21.08 16 23 N -0.72 -14.32 5.66 -487.49 -2.76 -17.08 16 24 C 0.08 1.25 10.70 127.77 1.37 2.62 16 25 C -0.10 -2.85 9.54 22.53 0.21 -2.64 16 26 C -0.05 -1.79 9.50 22.23 0.21 -1.58 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.10 4.48 5.31 -2.39 -0.01 4.47 16 35 H 0.05 2.21 7.46 -2.39 -0.02 2.20 16 36 H 0.28 11.86 8.31 -92.71 -0.77 11.09 16 37 H 0.13 5.24 7.61 -2.91 -0.02 5.22 16 38 H 0.14 4.79 7.65 -2.91 -0.02 4.77 16 39 H 0.42 5.78 6.86 -92.71 -0.64 5.15 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.17 3.27 6.41 -2.91 -0.02 3.26 16 44 H 0.14 5.15 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -66.59 380.06 0.00 -66.59 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.38 Total: 35.04 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 5.60 Total: -36.20 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -3.49 Total: -93.08 kcal Atomic # 8 Polarization: -124.30 SS G_CDS: -4.20 Total: -128.50 kcal Atomic # 14 Polarization: 34.65 SS G_CDS: 2.03 Total: 36.69 kcal Atomic # 16 Polarization: 119.78 SS G_CDS: -0.32 Total: 119.46 kcal Total: -66.59 0.00 -66.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191605138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.955 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds