Wall clock time and date at job start Tue Mar 31 2020 23:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99873 * 2 1 4 4 H 1.08996 * 109.47155 * 29.99753 * 3 2 1 5 5 C 1.50690 * 109.47286 * 150.00335 * 3 2 1 6 6 O 1.20828 * 120.00139 * 4.99899 * 5 3 2 7 7 O 1.34227 * 120.00068 * 185.00201 * 5 3 2 8 8 C 1.45206 * 116.99741 * 180.02562 * 7 5 3 9 9 H 1.08997 * 109.47365 * 29.99658 * 8 7 5 10 10 C 1.50703 * 109.46730 * 269.99581 * 8 7 5 11 11 H 1.08000 * 120.00371 * 330.21701 * 10 8 7 12 12 C 1.37880 * 119.99730 * 150.21949 * 10 8 7 13 13 N 1.31512 * 119.99669 * 184.43320 * 12 10 8 14 14 Si 1.86792 * 120.00037 * 4.43153 * 12 10 8 15 15 H 1.48500 * 109.47489 * 84.75146 * 14 12 10 16 16 H 1.48498 * 109.47171 * 204.74958 * 14 12 10 17 17 H 1.48506 * 109.47509 * 324.74951 * 14 12 10 18 18 C 1.50697 * 109.46892 * 150.00050 * 8 7 5 19 19 C 1.34521 * 125.78929 * 218.31708 * 18 8 7 20 20 C 1.41378 * 106.84007 * 179.88701 * 19 18 8 21 21 C 1.34509 * 106.84331 * 0.37594 * 20 19 18 22 22 O 1.34301 * 108.42059 * 359.76624 * 21 20 19 23 23 C 1.50700 * 109.46997 * 270.00205 * 3 2 1 24 24 O 1.20829 * 119.99853 * 355.00138 * 23 3 2 25 25 O 1.34229 * 120.00275 * 174.99745 * 23 3 2 26 26 C 1.45196 * 117.00459 * 179.97438 * 25 23 3 27 27 C 1.52999 * 109.47280 * 60.00178 * 26 25 23 28 28 C 1.53001 * 109.47312 * 180.02562 * 26 25 23 29 29 C 1.53005 * 109.47202 * 300.00260 * 26 25 23 30 30 H 1.09000 * 109.47313 * 60.00202 * 1 2 3 31 31 H 1.09004 * 109.47039 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47319 * 299.99618 * 1 2 3 33 33 H 0.97011 * 119.99948 * 179.97438 * 13 12 10 34 34 H 1.07998 * 126.57525 * 0.02562 * 19 18 8 35 35 H 1.08003 * 126.57595 * 180.16173 * 20 19 18 36 36 H 1.07998 * 125.78983 * 179.75375 * 21 20 19 37 37 H 1.09002 * 109.46801 * 59.99847 * 27 26 25 38 38 H 1.08998 * 109.47639 * 180.02562 * 27 26 25 39 39 H 1.09007 * 109.46899 * 300.00658 * 27 26 25 40 40 H 1.08999 * 109.47279 * 59.99547 * 28 26 25 41 41 H 1.08998 * 109.47075 * 180.02562 * 28 26 25 42 42 H 1.09002 * 109.46888 * 300.00226 * 28 26 25 43 43 H 1.08997 * 109.47018 * 59.99951 * 29 26 25 44 44 H 1.08998 * 109.47081 * 179.97438 * 29 26 25 45 45 H 1.08999 * 109.46742 * 300.00056 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2640 0.7103 6 8 3.7881 0.2085 1.0898 7 8 4.0226 2.3994 0.9214 8 6 5.2950 2.2839 1.6113 9 1 5.7408 1.3139 1.3914 10 6 5.0743 2.4103 3.0967 11 1 4.2570 3.0080 3.4723 12 6 5.9159 1.7628 3.9762 13 7 5.6726 1.8012 5.2680 14 14 7.4016 0.8311 3.3328 15 1 8.5365 1.7719 3.1537 16 1 7.7828 -0.2248 4.3050 17 1 7.0668 0.2053 2.0284 18 6 6.2199 3.3789 1.1459 19 6 7.5428 3.2550 0.9359 20 6 8.0095 4.5185 0.5066 21 6 6.9456 5.3413 0.4880 22 8 5.8643 4.6456 0.8760 23 6 2.2145 1.7644 -1.4208 24 8 1.9799 1.0134 -2.3379 25 8 2.6569 3.0074 -1.6677 26 6 2.8310 3.3809 -3.0599 27 6 1.4908 3.2693 -3.7894 28 6 3.3383 4.8220 -3.1418 29 6 3.8481 2.4447 -3.7158 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 6.2645 1.3453 5.8869 34 1 8.1343 2.3610 1.0676 35 1 9.0261 4.7750 0.2471 36 1 6.9586 6.3844 0.2085 37 1 0.7662 3.9362 -3.3221 38 1 1.6215 3.5492 -4.8347 39 1 1.1297 2.2424 -3.7310 40 1 4.2932 4.9012 -2.6222 41 1 3.4685 5.1025 -4.1870 42 1 2.6140 5.4892 -2.6744 43 1 3.4871 1.4179 -3.6575 44 1 3.9785 2.7248 -4.7611 45 1 4.8029 2.5242 -3.1961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:28 Heat of formation + Delta-G solvation = -203.901055 kcal Electronic energy + Delta-G solvation = -31847.384707 eV Core-core repulsion = 27411.621695 eV Total energy + Delta-G solvation = -4435.763012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.37513 -42.38576 -41.32582 -39.40884 -37.85967 -37.53640 -35.34620 -35.13654 -33.88221 -32.58026 -31.12334 -28.73137 -28.40778 -28.29495 -27.44823 -25.38882 -23.94666 -22.76863 -22.26785 -21.33755 -20.86493 -19.63250 -19.29577 -18.87345 -18.71095 -17.99149 -17.60770 -17.31792 -17.02691 -16.72010 -16.56467 -16.20773 -15.94226 -15.73749 -15.30438 -14.89006 -14.84709 -14.60507 -14.24125 -14.11831 -13.91048 -13.67878 -13.40462 -13.36362 -13.31131 -13.13787 -12.96688 -12.89156 -12.75005 -12.63678 -12.53341 -12.37831 -12.23366 -12.01545 -11.74693 -11.62753 -11.45357 -11.43701 -11.03106 -10.78672 -10.74315 -9.29454 -8.57333 -6.69654 0.46045 0.83754 0.97033 1.19475 1.20337 1.23191 1.28091 1.64514 1.81156 2.11149 2.22796 2.63331 2.81681 3.29616 3.36179 3.54237 3.70354 3.77523 3.93305 4.10026 4.16814 4.20610 4.34622 4.36345 4.43630 4.52332 4.58966 4.74844 4.75011 4.78472 4.84470 4.87314 4.90741 5.00464 5.03724 5.09417 5.22015 5.22431 5.24635 5.33284 5.39855 5.59188 5.69369 5.93404 6.33019 6.35696 6.50143 6.61887 6.99145 8.57014 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.005193 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.491545 B = 5390.317352 C = 7242.054468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.357 6.357 3 C 0.111 3.889 4 H 0.169 0.831 5 C 0.463 3.537 6 O -0.509 6.509 7 O -0.337 6.337 8 C 0.260 3.740 9 H 0.073 0.927 10 C -0.545 4.545 11 H 0.053 0.947 12 C 0.047 3.953 13 N -0.911 5.911 14 Si 0.909 3.091 15 H -0.236 1.236 16 H -0.271 1.271 17 H -0.255 1.255 18 C 0.007 3.993 19 C -0.248 4.248 20 C -0.214 4.214 21 C -0.048 4.048 22 O -0.178 6.178 23 C 0.458 3.542 24 O -0.489 6.489 25 O -0.340 6.340 26 C 0.102 3.898 27 C -0.176 4.176 28 C -0.135 4.135 29 C -0.182 4.182 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.278 0.722 34 H 0.136 0.864 35 H 0.179 0.821 36 H 0.247 0.753 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 6.924 -18.351 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.275 6.275 3 C 0.049 3.951 4 H 0.186 0.814 5 C 0.304 3.696 6 O -0.397 6.397 7 O -0.253 6.253 8 C 0.206 3.794 9 H 0.090 0.910 10 C -0.582 4.582 11 H 0.072 0.928 12 C -0.156 4.156 13 N -0.547 5.547 14 Si 0.732 3.268 15 H -0.160 1.160 16 H -0.196 1.196 17 H -0.180 1.180 18 C -0.045 4.045 19 C -0.268 4.268 20 C -0.233 4.233 21 C -0.115 4.115 22 O -0.074 6.074 23 C 0.299 3.701 24 O -0.377 6.377 25 O -0.257 6.257 26 C 0.067 3.933 27 C -0.233 4.233 28 C -0.192 4.192 29 C -0.239 4.239 30 H 0.079 0.921 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.196 0.804 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.120 0.880 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.858 6.317 -18.309 20.235 hybrid contribution 0.727 -0.783 0.575 1.214 sum -5.130 5.534 -17.734 19.273 Atomic orbital electron populations 1.23400 0.76602 1.05892 1.02119 1.88123 1.23793 1.21549 1.94005 1.20877 0.93220 0.90267 0.90688 0.81447 1.22946 0.86670 0.82561 0.77383 1.90652 1.68387 1.32637 1.48015 1.86465 1.34812 1.34322 1.69677 1.19174 0.77757 0.91839 0.90646 0.90993 1.21069 1.16196 1.32473 0.88412 0.92830 1.25599 1.00037 0.95185 0.94795 1.69950 1.38829 1.42926 1.03012 0.86377 0.80952 0.79981 0.79507 1.15962 1.19583 1.18008 1.22746 0.95302 0.84384 1.02050 1.21655 0.93683 1.01376 1.10052 1.22013 1.01744 0.91981 1.07538 1.24920 0.83536 0.99706 1.03309 1.84064 1.37504 1.20155 1.65639 1.23367 0.74367 0.81020 0.91374 1.90580 1.46511 1.55125 1.45444 1.86672 1.75824 1.30117 1.33132 1.22694 0.97220 0.97132 0.76301 1.22448 0.95164 1.03522 1.02121 1.21871 1.01899 0.91031 1.04398 1.22482 0.98257 1.00427 1.02775 0.92079 0.86481 0.91001 0.91251 0.84601 0.80380 0.73689 0.90915 0.88427 0.91868 0.92426 0.87450 0.90722 0.92277 0.87992 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 10.81 113.37 1.23 1.54 16 2 O -0.36 -11.93 9.43 -120.77 -1.14 -13.07 16 3 C 0.11 3.74 3.15 29.10 0.09 3.83 16 4 H 0.17 4.34 7.79 -2.39 -0.02 4.32 16 5 C 0.46 20.84 7.24 71.23 0.52 21.36 16 6 O -0.51 -26.59 15.73 28.38 0.45 -26.14 16 7 O -0.34 -16.01 9.64 -49.13 -0.47 -16.48 16 8 C 0.26 13.44 2.03 29.10 0.06 13.50 16 9 H 0.07 3.90 4.42 -2.39 -0.01 3.88 16 10 C -0.54 -32.24 9.20 25.60 0.24 -32.00 16 11 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 12 C 0.05 2.78 5.47 84.66 0.46 3.24 16 13 N -0.91 -55.83 13.96 21.45 0.30 -55.53 16 14 Si 0.91 44.23 24.76 68.60 1.70 45.93 16 15 H -0.24 -10.49 6.79 99.48 0.68 -9.81 16 16 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.26 -12.33 6.09 99.48 0.61 -11.72 16 18 C 0.01 0.30 6.03 24.83 0.15 0.45 16 19 C -0.25 -10.17 9.58 22.19 0.21 -9.95 16 20 C -0.21 -6.78 10.91 22.19 0.24 -6.53 16 21 C -0.05 -1.45 12.09 66.97 0.81 -0.64 16 22 O -0.18 -7.37 10.65 -0.71 -0.01 -7.37 16 23 C 0.46 14.80 6.54 71.24 0.47 15.27 16 24 O -0.49 -16.36 12.01 28.37 0.34 -16.02 16 25 O -0.34 -10.37 9.68 -51.27 -0.50 -10.86 16 26 C 0.10 2.36 1.13 -10.79 -0.01 2.35 16 27 C -0.18 -3.29 8.37 71.98 0.60 -2.68 16 28 C -0.14 -2.42 8.85 71.98 0.64 -1.78 16 29 C -0.18 -4.40 8.37 71.98 0.60 -3.80 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.24 8.08 -2.39 -0.02 1.23 16 33 H 0.28 15.74 8.31 -92.70 -0.77 14.97 16 34 H 0.14 5.45 6.15 -2.91 -0.02 5.43 16 35 H 0.18 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.25 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.45 5.89 -2.38 -0.01 1.43 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.70 5.89 -2.39 -0.01 1.69 16 44 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -79.49 379.60 7.85 -71.64 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.88 Total: 23.76 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.30 Total: 4.15 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.30 Total: -55.53 kcal Atomic # 8 Polarization: -88.62 SS G_CDS: -1.33 Total: -89.95 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.70 Total: 45.93 kcal Total: -79.49 7.85 -71.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.256 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds