Wall clock time and date at job start Tue Mar 31 2020 23:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 C 1.52999 * 109.46994 * 119.99755 * 2 1 3 5 5 H 1.08995 * 109.47098 * 185.00096 * 4 2 1 6 6 C 1.53004 * 109.47083 * 305.00173 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21776 * 119.99769 * 359.97438 * 8 7 6 10 10 C 1.41714 * 119.99958 * 179.97438 * 8 7 6 11 11 S 1.75655 * 125.10194 * 359.69606 * 10 8 7 12 12 C 1.75563 * 91.21343 * 179.89090 * 11 10 8 13 13 C 1.34200 * 110.67434 * 0.30729 * 12 11 10 14 14 C 1.37152 * 125.10050 * 179.97438 * 10 8 7 15 15 O 1.37650 * 124.48980 * 0.21351 * 14 10 8 16 16 C 1.43376 * 114.51795 * 163.37450 * 15 14 10 17 17 C 1.53225 * 109.14580 * 46.46408 * 16 15 14 18 18 O 1.38246 * 124.13523 * 179.97438 * 13 12 11 19 19 N 1.46498 * 109.47257 * 65.00162 * 4 2 1 20 20 C 1.36943 * 119.99752 * 84.72207 * 19 4 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 4 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 4 23 23 N 1.31611 * 120.00081 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47483 * 90.00178 * 24 22 20 26 26 H 1.48498 * 109.47011 * 210.00042 * 24 22 20 27 27 H 1.48502 * 109.47495 * 329.99664 * 24 22 20 28 28 H 1.08995 * 109.47325 * 299.99981 * 1 2 3 29 29 H 1.09008 * 109.46564 * 60.00321 * 1 2 3 30 30 H 1.08997 * 109.46808 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47325 * 240.00019 * 2 1 3 32 32 H 1.09000 * 109.47552 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47107 * 299.99722 * 3 2 1 34 34 H 1.09002 * 109.47383 * 59.99711 * 3 2 1 35 35 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 36 36 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 37 37 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 38 38 H 1.07993 * 124.66191 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.52394 * 286.56479 * 16 15 14 40 40 H 1.09003 * 109.57969 * 166.39792 * 16 15 14 41 41 H 1.09000 * 109.52139 * 177.82561 * 17 16 15 42 42 H 1.09002 * 109.52088 * 57.62681 * 17 16 15 43 43 H 0.97001 * 120.00384 * 265.00562 * 19 4 2 44 44 H 0.97008 * 120.00329 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 7 1.8226 -0.8395 3.6824 8 6 1.3986 -0.4540 4.9023 9 8 0.6893 0.5291 5.0177 10 6 1.7781 -1.1928 6.0505 11 16 2.7867 -2.6309 6.0386 12 6 2.6769 -2.7678 7.7854 13 6 1.9191 -1.7826 8.2912 14 6 1.4085 -0.8953 7.3374 15 8 0.6089 0.1672 7.6928 16 6 0.0509 0.0772 9.0105 17 6 1.1518 -0.3289 9.9958 18 8 1.6479 -1.6257 9.6377 19 7 1.6525 -2.1328 1.1907 20 6 2.4317 -3.0290 0.5088 21 1 3.3343 -2.6959 0.0180 22 6 2.0615 -4.3654 0.4484 23 7 2.8107 -5.2268 -0.2066 24 14 0.5000 -4.9413 1.2966 25 1 -0.6423 -4.8394 0.3533 26 1 0.6623 -6.3534 1.7267 27 1 0.2387 -4.0891 2.4844 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.7895 0.9487 2.5870 36 1 0.3434 -0.0736 2.4081 37 1 2.3873 -1.6228 3.5904 38 1 3.1502 -3.5414 8.3718 39 1 -0.7411 -0.6716 9.0203 40 1 -0.3588 1.0448 9.3005 41 1 0.7429 -0.3616 11.0057 42 1 1.9640 0.3969 9.9538 43 1 0.8418 -2.4319 1.6314 44 1 2.5522 -6.1609 -0.2485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271916929.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:14 Heat of formation + Delta-G solvation = -58.457268 kcal Electronic energy + Delta-G solvation = -27896.036949 eV Core-core repulsion = 23941.626475 eV Total energy + Delta-G solvation = -3954.410474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23928 -39.50417 -37.55103 -37.13479 -35.75330 -33.82633 -33.28363 -30.90293 -30.19673 -30.00682 -27.63887 -26.74859 -25.03947 -23.99932 -23.47006 -22.21829 -20.97637 -19.53403 -19.33273 -18.53896 -17.89408 -17.35949 -16.90154 -16.58188 -15.85766 -15.47087 -15.13442 -15.03605 -14.95733 -14.57049 -14.38843 -13.97778 -13.80498 -13.63645 -13.37579 -13.04550 -12.97044 -12.85036 -12.64207 -12.44353 -11.57105 -11.46799 -11.32413 -11.24976 -11.18588 -11.13233 -11.00777 -10.97328 -10.67229 -10.49563 -10.14319 -9.88066 -9.74234 -9.62960 -8.96827 -8.88031 -8.57330 -8.14530 -7.34136 -5.82443 -3.18946 0.28088 1.21550 1.45566 2.00698 2.99948 3.20182 3.33535 3.38061 3.38477 3.42764 3.47098 3.89621 4.29768 4.52720 4.54132 4.57805 4.96001 5.09071 5.12218 5.17054 5.20709 5.25347 5.35055 5.40503 5.57411 5.67446 5.71437 5.77449 5.83371 6.02332 6.05321 6.25495 6.28741 6.37236 6.39499 6.51452 6.61426 6.76806 6.84196 6.87444 6.99629 7.77857 7.93379 8.36026 8.43217 9.14024 9.86452 10.05725 11.35480 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003791 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.689313 B = 7384.148249 C = 8875.739915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.175 3.825 5 H 0.063 0.937 6 C 0.109 3.891 7 N -0.715 5.715 8 C 0.586 3.414 9 O -0.529 6.529 10 C -0.277 4.277 11 S 0.236 5.764 12 C -0.215 4.215 13 C 0.030 3.970 14 C 0.122 3.878 15 O -0.260 6.260 16 C 0.012 3.988 17 C 0.018 3.982 18 O -0.292 6.292 19 N -0.746 5.746 20 C -0.245 4.245 21 H 0.092 0.908 22 C 0.011 3.989 23 N -0.930 5.930 24 Si 0.875 3.125 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.276 1.276 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.405 0.595 38 H 0.182 0.818 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.362 0.638 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 10.109 18.333 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.065 3.935 5 H 0.081 0.919 6 C -0.015 4.015 7 N -0.368 5.368 8 C 0.373 3.627 9 O -0.408 6.408 10 C -0.397 4.397 11 S 0.500 5.500 12 C -0.353 4.353 13 C -0.027 4.027 14 C 0.060 3.940 15 O -0.173 6.173 16 C -0.064 4.064 17 C -0.058 4.058 18 O -0.208 6.208 19 N -0.389 5.389 20 C -0.375 4.375 21 H 0.110 0.890 22 C -0.185 4.185 23 N -0.578 5.578 24 Si 0.705 3.295 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.202 1.202 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.241 0.759 38 H 0.199 0.801 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.096 0.904 43 H 0.195 0.805 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.487 9.870 17.154 19.847 hybrid contribution -1.688 -0.157 1.762 2.445 sum -3.176 9.714 18.916 21.500 Atomic orbital electron populations 1.21817 0.96035 1.01925 1.00305 1.21701 0.95801 0.94898 1.00877 1.21902 1.00763 0.96878 1.01041 1.20505 0.97844 0.84642 0.90526 0.91913 1.21900 1.00512 0.95029 0.84051 1.45932 1.52943 1.32031 1.05890 1.15536 0.80832 0.84265 0.82076 1.90847 1.37353 1.26502 1.86127 1.22687 1.15224 1.06202 0.95609 1.84663 1.46854 1.19639 0.98798 1.25050 1.05854 1.04834 0.99545 1.18200 1.01868 0.98414 0.84205 1.18833 0.94090 0.89921 0.91107 1.87185 1.60711 1.37487 1.31906 1.23710 0.95763 1.05152 0.81802 1.23620 0.97458 0.84590 1.00144 1.87058 1.82134 1.32876 1.18731 1.42841 1.28423 1.03226 1.64371 1.19043 1.04623 0.88189 1.25636 0.89018 1.24618 0.97941 0.95955 1.00007 1.69688 1.38989 1.02942 1.46149 0.86700 0.84731 0.78172 0.79864 1.21088 1.21667 1.20159 0.93270 0.93773 0.92185 0.90175 0.92963 0.93355 0.93011 0.91056 0.91139 0.75891 0.80108 0.90357 0.85737 0.85898 0.90423 0.80482 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.60 37.16 0.32 -1.95 16 2 C -0.11 -1.82 2.87 -90.62 -0.26 -2.08 16 3 C -0.15 -2.00 8.95 37.16 0.33 -1.67 16 4 C 0.17 3.13 2.22 -67.93 -0.15 2.98 16 5 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 6 C 0.11 1.82 4.53 -4.04 -0.02 1.80 16 7 N -0.72 -12.30 5.37 -63.19 -0.34 -12.64 16 8 C 0.59 10.52 7.59 -14.93 -0.11 10.41 16 9 O -0.53 -10.83 15.86 -11.89 -0.19 -11.02 16 10 C -0.28 -4.37 6.25 -38.65 -0.24 -4.61 16 11 S 0.24 3.06 22.17 -107.50 -2.38 0.67 16 12 C -0.22 -2.45 11.17 29.31 0.33 -2.12 16 13 C 0.03 0.38 6.54 -40.38 -0.26 0.11 16 14 C 0.12 1.81 6.58 -39.35 -0.26 1.55 16 15 O -0.26 -3.78 9.60 -49.12 -0.47 -4.25 16 16 C 0.01 0.11 7.14 37.27 0.27 0.37 16 17 C 0.02 0.14 7.14 37.27 0.27 0.41 16 18 O -0.29 -3.26 10.77 -35.40 -0.38 -3.64 16 19 N -0.75 -16.18 3.82 -53.43 -0.20 -16.38 16 20 C -0.25 -6.39 10.41 -15.06 -0.16 -6.55 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 22 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 23 N -0.93 -27.98 13.97 55.49 0.78 -27.20 16 24 Si 0.88 21.33 27.74 -169.99 -4.71 16.61 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 28 H 0.05 0.73 6.23 -51.93 -0.32 0.41 16 29 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.06 1.07 7.75 -51.93 -0.40 0.66 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.66 6.68 -51.93 -0.35 0.32 16 35 H 0.07 1.12 6.81 -51.93 -0.35 0.77 16 36 H 0.07 1.22 6.06 -51.93 -0.31 0.91 16 37 H 0.40 6.93 7.07 -40.82 -0.29 6.65 16 38 H 0.18 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.36 8.03 5.66 -40.82 -0.23 7.80 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -33.14 369.43 -8.47 -41.60 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.08 Total: 11.81 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.05 Total: -1.14 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.23 Total: -56.22 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.04 Total: -18.91 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.38 Total: 0.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.14 -8.47 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271916929.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.854 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds